Wall clock time and date at job start Mon Mar 30 2020 04:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34230 * 116.99782 * 2 1 4 4 O 1.20832 * 120.00008 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99756 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46764 * 179.97438 * 5 3 2 7 7 C 1.37094 * 120.00190 * 270.00110 * 6 5 3 8 8 H 1.08001 * 119.99610 * 201.61194 * 7 6 5 9 9 C 1.38947 * 120.00219 * 21.60692 * 7 6 5 10 10 N 1.31418 * 119.99940 * 350.97929 * 9 7 6 11 11 Si 1.86797 * 120.00384 * 170.97961 * 9 7 6 12 12 H 1.48505 * 109.46722 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47409 * 119.99888 * 11 9 7 14 14 H 1.48498 * 109.47250 * 240.00191 * 11 9 7 15 15 C 1.34778 * 119.99628 * 90.00554 * 6 5 3 16 16 O 1.21293 * 120.00186 * 4.45405 * 15 6 5 17 17 C 1.50702 * 119.99956 * 184.45680 * 15 6 5 18 18 C 1.52993 * 109.46908 * 180.50431 * 17 15 6 19 19 C 1.47202 * 115.56519 * 34.31154 * 18 17 15 20 20 N 6.99931 * 127.71292 * 50.17267 * 2 1 3 21 21 C 1.53000 * 117.49672 * 180.02562 * 18 17 15 22 22 C 1.53002 * 60.03398 * 107.47494 * 21 18 17 23 23 H 1.08999 * 109.47064 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46424 * 299.99803 * 1 2 3 25 25 H 1.08997 * 109.47308 * 59.99864 * 1 2 3 26 26 H 1.08999 * 109.46915 * 60.00540 * 5 3 2 27 27 H 1.08998 * 109.47307 * 300.00365 * 5 3 2 28 28 H 0.96997 * 120.00221 * 185.00906 * 10 9 7 29 29 H 1.08999 * 109.46753 * 60.50226 * 17 15 6 30 30 H 1.08995 * 109.46803 * 300.50524 * 17 15 6 31 31 H 1.09002 * 117.49993 * 214.97654 * 21 18 17 32 32 H 1.09007 * 117.50046 * 359.96935 * 21 18 17 33 33 H 1.08999 * 117.49474 * 107.50253 * 22 21 18 34 34 H 1.08997 * 117.49429 * 252.52217 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1755 3.3369 -1.1886 8 1 4.7959 4.2204 -1.2218 9 6 3.5740 2.8663 -2.3493 10 7 2.9680 1.7002 -2.3490 11 14 3.6267 3.8911 -3.9102 12 1 4.3628 5.1540 -3.6486 13 1 4.3171 3.1277 -4.9805 14 1 2.2414 4.2066 -4.3422 15 6 4.1732 3.3263 1.1659 16 8 4.0808 2.7244 2.2149 17 6 4.5022 4.7969 1.1675 18 6 4.6808 5.2780 2.6089 19 6 5.2760 4.3011 3.5354 20 7 5.7336 3.5464 4.2523 21 6 5.0210 6.7541 2.8239 22 6 3.6249 6.2331 3.1710 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 3.9557 0.7810 -0.8909 27 1 3.9565 0.7806 0.8891 28 1 2.6116 1.3387 -3.1755 29 1 3.6900 5.3514 0.6974 30 1 5.4250 4.9633 0.6119 31 1 5.6858 7.0021 3.6514 32 1 5.1180 7.3824 1.9384 33 1 3.3713 6.1383 4.2269 34 1 2.8035 6.5183 2.5137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590266182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:10 Heat of formation + Delta-G solvation = -67.919032 kcal Electronic energy + Delta-G solvation = -20672.093876 eV Core-core repulsion = 17378.497480 eV Total energy + Delta-G solvation = -3293.596397 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39801 -40.49124 -38.86059 -37.24154 -36.50332 -36.27625 -33.43672 -31.36756 -29.47552 -27.79034 -26.43091 -24.11645 -23.28041 -22.18545 -21.15941 -19.36110 -18.48177 -18.05518 -17.52061 -17.25702 -16.95122 -16.19911 -15.92727 -15.80226 -15.49295 -14.79468 -14.57515 -14.23943 -14.18736 -13.97028 -13.52821 -13.29088 -13.09093 -12.93856 -12.91316 -12.72814 -12.56047 -12.31610 -12.21969 -11.97903 -11.60014 -11.53932 -11.39020 -10.92424 -10.87388 -10.35937 -9.88510 -8.27943 -5.97431 1.42913 1.52349 1.64407 1.69903 1.81662 1.86161 2.03207 2.23284 2.37180 2.84611 2.99381 3.18050 3.27605 3.71663 4.03561 4.08624 4.27503 4.33167 4.37652 4.45911 4.64581 4.70344 4.79805 4.85367 4.87881 4.95322 5.03950 5.10444 5.33292 5.47736 5.63703 5.76859 6.36144 6.89684 7.10269 7.19876 7.49343 7.90135 8.72543 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.007954 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.846044 B = 3519.357705 C = 4624.589650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.492 3.508 4 O -0.546 6.546 5 C 0.149 3.851 6 N -0.444 5.444 7 C -0.338 4.338 8 H 0.129 0.871 9 C -0.006 4.006 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.242 1.242 13 H -0.281 1.281 14 H -0.295 1.295 15 C 0.450 3.550 16 O -0.626 6.626 17 C -0.068 4.068 18 C -0.072 4.072 19 C 0.280 3.720 20 N -0.507 5.507 21 C -0.106 4.106 22 C -0.143 4.143 23 H 0.132 0.868 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.137 0.863 27 H 0.068 0.932 28 H 0.270 0.730 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 8.223 -0.063 8.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.295 6.295 3 C 0.336 3.664 4 O -0.435 6.435 5 C 0.024 3.976 6 N -0.163 5.163 7 C -0.464 4.464 8 H 0.147 0.853 9 C -0.206 4.206 10 N -0.552 5.552 11 Si 0.823 3.177 12 H -0.165 1.165 13 H -0.207 1.207 14 H -0.222 1.222 15 C 0.241 3.759 16 O -0.513 6.513 17 C -0.108 4.108 18 C -0.076 4.076 19 C -0.034 4.034 20 N -0.185 5.185 21 C -0.144 4.144 22 C -0.182 4.182 23 H 0.150 0.850 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.154 0.846 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.164 0.836 33 H 0.117 0.883 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.099 6.972 1.380 7.108 hybrid contribution -0.764 -0.256 -1.155 1.408 sum -0.863 6.716 0.225 6.775 Atomic orbital electron populations 1.23289 0.76265 1.04820 1.01185 1.86438 1.24064 1.34032 1.84951 1.24043 0.92568 0.80656 0.69107 1.90451 1.67435 1.37489 1.48103 1.20659 0.87021 0.86523 1.03424 1.43599 1.58049 1.08403 1.06219 1.20257 1.29166 1.12479 0.84496 0.85319 1.26204 0.94028 0.97091 1.03252 1.69765 1.38443 1.18227 1.28766 0.84763 0.77296 0.79100 0.76555 1.16485 1.20739 1.22189 1.21188 0.80994 0.91135 0.82589 1.90554 1.58875 1.69596 1.32256 1.21020 1.05498 0.91090 0.93164 1.18358 1.08479 0.89192 0.91541 1.27980 0.91265 0.92041 0.92131 1.81049 1.13359 1.10430 1.13684 1.23412 0.97215 0.88284 1.05514 1.23390 0.94014 0.98051 1.02710 0.84984 0.93095 0.93478 0.84604 0.91395 0.91987 0.85993 0.86713 0.86834 0.83595 0.88299 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.50 16 2 O -0.38 -16.78 10.57 -51.42 -0.54 -17.32 16 3 C 0.49 24.97 5.98 71.24 0.43 25.40 16 4 O -0.55 -30.13 16.03 21.95 0.35 -29.78 16 5 C 0.15 7.47 5.28 85.63 0.45 7.93 16 6 N -0.44 -21.70 2.11 -639.59 -1.35 -23.06 16 7 C -0.34 -15.56 9.11 84.04 0.77 -14.80 16 8 H 0.13 5.14 6.53 -2.91 -0.02 5.12 16 9 C -0.01 -0.29 5.41 84.92 0.46 0.17 16 10 N -0.91 -45.71 8.27 21.66 0.18 -45.53 16 11 Si 1.00 37.21 29.57 68.60 2.03 39.24 16 12 H -0.24 -7.97 7.11 99.48 0.71 -7.27 16 13 H -0.28 -10.42 7.11 99.48 0.71 -9.71 16 14 H -0.30 -11.65 7.11 99.48 0.71 -10.95 16 15 C 0.45 20.82 7.44 87.66 0.65 21.48 16 16 O -0.63 -33.01 13.13 -3.07 -0.04 -33.05 16 17 C -0.07 -2.23 4.49 29.85 0.13 -2.09 16 18 C -0.07 -2.10 2.26 -53.96 -0.12 -2.22 16 19 C 0.28 10.99 12.06 89.43 1.08 12.07 16 20 N -0.51 -22.83 18.36 20.02 0.37 -22.46 16 21 C -0.11 -1.81 9.93 30.59 0.30 -1.51 16 22 C -0.14 -3.11 9.86 30.62 0.30 -2.80 16 23 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 24 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 25 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 26 H 0.14 6.88 6.15 -2.39 -0.01 6.87 16 27 H 0.07 3.40 7.37 -2.39 -0.02 3.39 16 28 H 0.27 13.08 8.32 -92.71 -0.77 12.31 16 29 H 0.12 3.62 7.90 -2.39 -0.02 3.60 16 30 H 0.11 3.26 7.48 -2.39 -0.02 3.24 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.15 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.13 2.38 8.05 -2.39 -0.02 2.36 16 Total: -1.00 -72.67 302.38 7.77 -64.90 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 1.13 Total: 20.94 kcal Atomic # 6 Polarization: 40.48 SS G_CDS: 5.65 Total: 46.13 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -0.80 Total: -91.05 kcal Atomic # 8 Polarization: -79.92 SS G_CDS: -0.23 Total: -80.15 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -72.67 7.77 -64.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590266182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.020 kcal (2) G-P(sol) polarization free energy of solvation -72.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds