Wall clock time and date at job start Mon Mar 30 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99731 * 2 1 4 4 H 1.48505 * 109.46687 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47383 * 300.00082 * 3 2 1 6 6 H 1.48495 * 109.46809 * 60.00741 * 3 2 1 7 7 C 1.37877 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47299 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47399 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99621 * 359.97438 * 12 11 10 14 14 N 1.34767 * 120.00160 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00321 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47657 * 180.02562 * 15 14 12 17 17 C 1.38232 * 119.59260 * 94.99267 * 16 15 14 18 18 C 1.38596 * 119.18886 * 180.02562 * 17 16 15 19 19 C 1.38879 * 118.39652 * 0.25621 * 18 17 16 20 20 F 1.35106 * 120.44068 * 179.74732 * 19 18 17 21 21 C 1.38422 * 119.11596 * 359.51901 * 19 18 17 22 22 N 1.31848 * 119.58665 * 275.02099 * 16 15 14 23 23 H 0.97003 * 120.00049 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47237 * 59.99900 * 9 7 2 25 25 H 1.09004 * 109.47026 * 300.00009 * 9 7 2 26 26 H 1.09002 * 109.47550 * 59.99674 * 10 9 7 27 27 H 1.09004 * 109.46899 * 299.99668 * 10 9 7 28 28 H 1.09002 * 109.47126 * 59.99365 * 11 10 9 29 29 H 1.08997 * 109.46499 * 299.99779 * 11 10 9 30 30 H 0.97000 * 120.00061 * 359.97438 * 14 12 11 31 31 H 1.09002 * 109.47537 * 59.99456 * 15 14 12 32 32 H 1.09004 * 109.46651 * 299.99611 * 15 14 12 33 33 H 1.08002 * 120.40687 * 0.02599 * 17 16 15 34 34 H 1.08002 * 120.79700 * 179.97438 * 18 17 16 35 35 H 1.07999 * 119.63454 * 180.20814 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9872 -0.0012 12 6 2.4595 -6.1326 -0.0018 13 8 3.6520 -5.9109 -0.0022 14 7 2.0103 -7.4032 -0.0019 15 6 2.9623 -8.5167 -0.0020 16 6 2.2089 -9.8218 -0.0027 17 6 1.9587 -10.4649 -1.2005 18 6 1.2646 -11.6645 -1.1915 19 6 0.8406 -12.1731 0.0293 20 9 0.1563 -13.3367 0.0855 21 6 1.1327 -11.4745 1.1880 22 7 1.7961 -10.3359 1.1391 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8906 28 1 0.8538 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 1.0567 -7.5805 -0.0012 31 1 3.5890 -8.4591 0.8880 32 1 3.5889 -8.4589 -0.8920 33 1 2.2998 -10.0378 -2.1320 34 1 1.0544 -12.1887 -2.1121 35 1 0.8100 -11.8641 2.1422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594320346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:36 Heat of formation + Delta-G solvation = -66.360277 kcal Electronic energy + Delta-G solvation = -18440.587582 eV Core-core repulsion = 15159.431568 eV Total energy + Delta-G solvation = -3281.156015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.47799 -40.76645 -39.32734 -35.11678 -34.13374 -33.04524 -32.13746 -31.53580 -28.27420 -26.50552 -24.45489 -23.75427 -22.48014 -20.67325 -19.79489 -18.18954 -17.80865 -17.37865 -16.41687 -16.23796 -16.08363 -15.53232 -15.47859 -14.53209 -14.50329 -14.38416 -13.85595 -13.72217 -13.50892 -13.22207 -12.59044 -12.41238 -12.24963 -11.77925 -11.31530 -10.80785 -10.58725 -10.50293 -10.49104 -10.13398 -9.82409 -9.66186 -9.44633 -9.21094 -9.08863 -8.97547 -8.30817 -5.96299 -3.97515 0.28351 0.54739 2.87844 2.91050 3.34870 3.41163 3.42187 3.47768 3.52011 3.76506 4.07023 4.21620 4.30886 4.50826 4.80459 5.06808 5.10272 5.24103 5.31226 5.39913 5.48239 5.56515 5.73506 5.74269 6.04281 6.26223 6.37087 6.74854 6.95141 7.18336 7.29823 7.54187 7.73181 7.85722 8.04717 8.41718 8.48809 9.09974 9.66477 11.15279 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.052372 B = 0.002564 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.506370 B =10918.067505 C =11146.773491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.019 3.981 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.516 3.484 13 O -0.536 6.536 14 N -0.735 5.735 15 C 0.172 3.828 16 C 0.101 3.899 17 C -0.123 4.123 18 C -0.109 4.109 19 C 0.051 3.949 20 F -0.129 7.129 21 C 0.077 3.923 22 N -0.441 5.441 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.400 0.600 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 -26.549 -1.958 26.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.018 4.018 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.304 3.696 13 O -0.411 6.411 14 N -0.389 5.389 15 C 0.048 3.952 16 C -0.037 4.037 17 C -0.143 4.143 18 C -0.136 4.136 19 C 0.029 3.971 20 F -0.108 7.108 21 C -0.082 4.082 22 N -0.149 5.149 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.234 0.766 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.042 -25.843 -1.182 25.891 hybrid contribution -0.497 -0.038 -0.775 0.922 sum 0.545 -25.882 -1.957 25.961 Atomic orbital electron populations 1.69975 1.06041 1.26414 1.51362 1.25027 0.94856 0.99271 0.95430 0.86538 0.80242 0.83768 0.77503 1.19673 1.21064 1.21049 1.21318 0.93240 0.91001 1.49922 0.92501 1.19143 0.93990 0.91489 0.97138 1.21452 0.98638 0.91474 1.01739 1.21850 0.98117 0.93934 1.03846 1.21288 0.90453 0.83390 0.74498 1.90689 1.17293 1.84568 1.48581 1.46074 1.09850 1.05261 1.77712 1.20034 0.90821 0.80307 1.04059 1.21394 0.96888 0.96967 0.88423 1.22023 0.97789 0.94551 0.99975 1.21723 0.97571 0.96566 0.97704 1.18895 0.97401 0.84855 0.95945 1.91545 1.76917 1.45108 1.97186 1.22978 0.96224 0.91151 0.97830 1.67603 1.08113 1.10048 1.29130 0.93138 0.96603 0.96588 0.92638 0.92673 0.89319 0.89259 0.76583 0.89531 0.89652 0.83207 0.83170 0.81251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 10 C -0.09 -2.04 4.44 -26.73 -0.12 -2.16 16 11 C -0.14 -2.25 5.70 -27.88 -0.16 -2.40 16 12 C 0.52 8.08 7.83 -10.99 -0.09 7.99 16 13 O -0.54 -10.47 15.98 5.55 0.09 -10.38 16 14 N -0.73 -8.46 5.55 -61.47 -0.34 -8.81 16 15 C 0.17 1.76 5.98 -5.20 -0.03 1.73 16 16 C 0.10 0.88 6.15 -82.59 -0.51 0.38 16 17 C -0.12 -0.81 9.72 -39.45 -0.38 -1.19 16 18 C -0.11 -0.67 10.16 -39.21 -0.40 -1.07 16 19 C 0.05 0.37 7.35 -39.28 -0.29 0.08 16 20 F -0.13 -1.01 17.28 2.25 0.04 -0.97 16 21 C 0.08 0.60 11.17 -17.47 -0.20 0.41 16 22 N -0.44 -4.26 10.27 -9.42 -0.10 -4.35 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.25 8.10 -51.93 -0.42 0.82 16 27 H 0.05 1.23 8.10 -51.93 -0.42 0.80 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.40 3.78 8.46 -40.82 -0.35 3.43 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 33 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 35 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -34.03 314.91 -7.09 -41.12 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.53 Total: -2.28 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.72 Total: -9.68 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.30 Total: -39.62 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.03 -7.09 -41.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594320346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.236 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds