Wall clock time and date at job start Mon Mar 30 2020 04:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99731 * 2 1 4 4 H 1.48505 * 109.46687 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47383 * 300.00082 * 3 2 1 6 6 H 1.48495 * 109.46809 * 60.00741 * 3 2 1 7 7 C 1.37877 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47299 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47399 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99621 * 359.97438 * 12 11 10 14 14 N 1.34767 * 120.00160 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00321 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47657 * 180.02562 * 15 14 12 17 17 C 1.38232 * 119.59260 * 94.99267 * 16 15 14 18 18 C 1.38596 * 119.18886 * 180.02562 * 17 16 15 19 19 C 1.38879 * 118.39652 * 0.25621 * 18 17 16 20 20 F 1.35106 * 120.44068 * 179.74732 * 19 18 17 21 21 C 1.38422 * 119.11596 * 359.51901 * 19 18 17 22 22 N 1.31848 * 119.58665 * 275.02099 * 16 15 14 23 23 H 0.97003 * 120.00049 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47237 * 59.99900 * 9 7 2 25 25 H 1.09004 * 109.47026 * 300.00009 * 9 7 2 26 26 H 1.09002 * 109.47550 * 59.99674 * 10 9 7 27 27 H 1.09004 * 109.46899 * 299.99668 * 10 9 7 28 28 H 1.09002 * 109.47126 * 59.99365 * 11 10 9 29 29 H 1.08997 * 109.46499 * 299.99779 * 11 10 9 30 30 H 0.97000 * 120.00061 * 359.97438 * 14 12 11 31 31 H 1.09002 * 109.47537 * 59.99456 * 15 14 12 32 32 H 1.09004 * 109.46651 * 299.99611 * 15 14 12 33 33 H 1.08002 * 120.40687 * 0.02599 * 17 16 15 34 34 H 1.08002 * 120.79700 * 179.97438 * 18 17 16 35 35 H 1.07999 * 119.63454 * 180.20814 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9872 -0.0012 12 6 2.4595 -6.1326 -0.0018 13 8 3.6520 -5.9109 -0.0022 14 7 2.0103 -7.4032 -0.0019 15 6 2.9623 -8.5167 -0.0020 16 6 2.2089 -9.8218 -0.0027 17 6 1.9587 -10.4649 -1.2005 18 6 1.2646 -11.6645 -1.1915 19 6 0.8406 -12.1731 0.0293 20 9 0.1563 -13.3367 0.0855 21 6 1.1327 -11.4745 1.1880 22 7 1.7961 -10.3359 1.1391 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8906 28 1 0.8538 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 1.0567 -7.5805 -0.0012 31 1 3.5890 -8.4591 0.8880 32 1 3.5889 -8.4589 -0.8920 33 1 2.2998 -10.0378 -2.1320 34 1 1.0544 -12.1887 -2.1121 35 1 0.8100 -11.8641 2.1422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594320346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:35 Heat of formation + Delta-G solvation = -89.312683 kcal Electronic energy + Delta-G solvation = -18441.582873 eV Core-core repulsion = 15159.431568 eV Total energy + Delta-G solvation = -3282.151306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.05190 -41.43136 -40.51045 -36.32397 -35.87049 -34.02344 -33.59100 -32.44092 -29.88631 -27.63514 -25.54718 -24.96784 -23.26199 -22.24862 -21.24684 -18.82169 -18.64411 -18.39472 -18.01140 -17.34931 -16.84361 -16.77136 -16.52075 -16.32956 -15.39005 -15.05519 -14.91030 -14.82891 -14.36139 -14.23063 -13.95562 -13.75615 -13.72384 -13.07004 -13.02105 -12.60432 -12.50237 -12.36010 -11.53097 -11.45845 -11.24370 -11.01910 -10.89306 -10.68634 -10.53499 -10.14860 -9.99128 -8.19280 -6.28972 -0.30221 0.03190 1.40361 1.40713 1.54552 1.66305 2.08066 2.42674 2.66377 2.88832 3.13829 3.14073 3.52398 3.74542 3.79399 3.91625 4.20947 4.27544 4.29953 4.46676 4.62872 4.71561 4.81570 4.85186 4.91853 5.00214 5.13584 5.21446 5.36189 5.51112 5.56736 5.77923 5.89003 6.28951 6.50175 6.71708 6.87074 7.24654 7.39775 8.92500 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.052372 B = 0.002564 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.506370 B =10918.067505 C =11146.773491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.083 4.083 11 C -0.130 4.130 12 C 0.521 3.479 13 O -0.580 6.580 14 N -0.714 5.714 15 C 0.174 3.826 16 C 0.089 3.911 17 C -0.114 4.114 18 C -0.102 4.102 19 C 0.047 3.953 20 F -0.132 7.132 21 C 0.070 3.930 22 N -0.468 5.468 23 H 0.264 0.736 24 H 0.002 0.998 25 H 0.000 1.000 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.413 0.587 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.174 0.826 34 H 0.177 0.823 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -27.502 -2.800 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.309 3.691 13 O -0.459 6.459 14 N -0.367 5.367 15 C 0.050 3.950 16 C -0.048 4.048 17 C -0.134 4.134 18 C -0.129 4.129 19 C 0.025 3.975 20 F -0.111 7.111 21 C -0.089 4.089 22 N -0.177 5.177 23 H 0.073 0.927 24 H 0.021 0.979 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.249 0.751 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.191 0.809 34 H 0.195 0.805 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.836 -26.841 -2.023 26.930 hybrid contribution -0.491 0.169 -0.508 0.726 sum 0.345 -26.672 -2.531 26.794 Atomic orbital electron populations 1.70075 1.07511 1.27702 1.51785 1.25915 0.95826 1.03100 0.94760 0.85445 0.78921 0.79005 0.77977 1.19173 1.20050 1.20156 1.21735 0.93375 0.92806 1.50434 0.93003 1.19035 0.94248 0.92435 0.95527 1.21165 0.97614 0.92875 1.00422 1.21679 0.97933 0.91633 1.05754 1.21002 0.89403 0.84422 0.74284 1.90678 1.18857 1.85339 1.51073 1.45838 1.10907 1.04358 1.75640 1.20056 0.90635 0.80551 1.03781 1.21209 0.97760 0.96620 0.89232 1.22210 0.96941 0.94327 0.99951 1.22030 0.96373 0.96204 0.98258 1.19007 0.97356 0.84701 0.96405 1.91540 1.77017 1.45295 1.97233 1.23197 0.96062 0.90801 0.98880 1.67532 1.09118 1.11096 1.29981 0.92689 0.97946 0.98206 0.94154 0.93786 0.87122 0.87684 0.75060 0.91253 0.88572 0.80886 0.80519 0.79888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.08 -3.60 4.44 30.59 0.14 -3.47 16 11 C -0.13 -4.14 5.70 29.85 0.17 -3.97 16 12 C 0.52 15.91 7.83 87.66 0.69 16.60 16 13 O -0.58 -22.74 15.98 -3.06 -0.05 -22.79 16 14 N -0.71 -15.43 5.55 -466.80 -2.59 -18.02 16 15 C 0.17 3.36 5.98 85.63 0.51 3.87 16 16 C 0.09 1.42 6.15 42.55 0.26 1.68 16 17 C -0.11 -1.19 9.72 22.35 0.22 -0.97 16 18 C -0.10 -0.96 10.16 22.51 0.23 -0.73 16 19 C 0.05 0.60 7.35 22.47 0.17 0.76 16 20 F -0.13 -1.83 17.28 44.97 0.78 -1.05 16 21 C 0.07 1.00 11.17 84.73 0.95 1.95 16 22 N -0.47 -8.57 10.27 -183.71 -1.89 -10.46 16 23 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 24 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 26 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 27 H 0.04 1.99 8.10 -2.38 -0.02 1.97 16 28 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.41 6.94 8.46 -92.71 -0.78 6.16 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 1.68 8.04 -2.38 -0.02 1.66 16 33 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -73.78 314.91 3.05 -70.73 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 0.32 Total: 4.79 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 4.17 Total: -14.17 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -4.19 Total: -84.81 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.78 Total: -1.05 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.78 3.05 -70.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594320346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.581 kcal (2) G-P(sol) polarization free energy of solvation -73.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds