Wall clock time and date at job start Mon Mar 30 2020 04:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99903 * 2 1 4 4 H 1.48498 * 109.47340 * 239.99523 * 3 2 1 5 5 H 1.48495 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46985 * 120.00076 * 3 2 1 7 7 C 1.37875 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00591 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99534 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46816 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46956 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46811 * 179.97438 * 11 10 9 13 13 O 1.21275 * 120.00168 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99752 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00189 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47108 * 179.97438 * 15 14 12 17 17 N 1.31865 * 119.63513 * 269.97587 * 16 15 14 18 18 C 1.31845 * 121.75130 * 179.67786 * 17 16 15 19 19 C 1.38238 * 120.81726 * 0.64271 * 18 17 16 20 20 C 1.38588 * 119.18753 * 359.39683 * 19 18 17 21 21 C 1.38413 * 119.63374 * 90.00121 * 16 15 14 22 22 F 1.35101 * 120.44736 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00164 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47365 * 60.00594 * 9 7 2 25 25 H 1.08996 * 109.47210 * 299.99979 * 9 7 2 26 26 H 1.08999 * 109.47478 * 60.00394 * 10 9 7 27 27 H 1.09000 * 109.47518 * 300.00061 * 10 9 7 28 28 H 1.08999 * 109.46612 * 59.99978 * 11 10 9 29 29 H 1.08996 * 109.47233 * 299.99915 * 11 10 9 30 30 H 0.97002 * 119.99912 * 0.02562 * 14 12 11 31 31 H 1.09002 * 109.46982 * 59.99756 * 15 14 12 32 32 H 1.08996 * 109.47044 * 299.99905 * 15 14 12 33 33 H 1.08000 * 119.59812 * 180.31887 * 18 17 16 34 34 H 1.08002 * 120.40978 * 179.67953 * 19 18 17 35 35 H 1.07999 * 120.80386 * 180.30037 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4597 -6.1325 -0.0005 13 8 3.6521 -5.9108 -0.0009 14 7 2.0105 -7.4032 -0.0006 15 6 2.9625 -8.5167 -0.0007 16 6 2.2089 -9.8218 -0.0002 17 7 1.8837 -10.3865 1.1462 18 6 1.2195 -11.5244 1.1954 19 6 0.8484 -12.1785 0.0354 20 6 1.1720 -11.6176 -1.1899 21 6 1.8664 -10.4148 -1.2030 22 9 2.2025 -9.8312 -2.3742 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.8534 -5.0450 -0.8897 29 1 0.8540 -5.0446 0.8903 30 1 1.0568 -7.5805 -0.0007 31 1 3.5891 -8.4590 0.8893 32 1 3.5891 -8.4589 -0.8906 33 1 0.9666 -11.9535 2.1537 34 1 0.3090 -13.1129 0.0834 35 1 0.8908 -12.1038 -2.1123 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594326214.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:48 Heat of formation + Delta-G solvation = -64.662315 kcal Electronic energy + Delta-G solvation = -18765.562373 eV Core-core repulsion = 15484.479987 eV Total energy + Delta-G solvation = -3281.082386 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.40367 -40.66687 -39.31963 -35.20118 -34.11129 -32.92761 -32.06559 -31.48248 -28.34350 -26.66836 -24.09854 -23.76747 -22.54124 -20.65094 -19.76875 -18.17710 -17.74310 -17.33970 -16.53089 -16.32151 -15.96980 -15.51926 -15.40470 -14.47728 -14.39687 -13.98028 -13.92023 -13.82624 -13.50747 -13.25995 -12.55111 -12.38820 -12.21358 -11.77124 -11.28396 -10.74909 -10.58929 -10.51842 -10.46664 -10.11079 -9.77392 -9.63031 -9.42845 -9.19445 -9.05395 -8.97433 -8.28156 -5.94082 -3.95400 0.31252 0.53724 2.92323 2.95040 3.38912 3.39465 3.42569 3.46638 3.57390 3.78266 4.08575 4.18930 4.36561 4.52518 4.80704 5.06564 5.16718 5.21218 5.33704 5.41870 5.51554 5.58874 5.76760 5.77064 6.05988 6.28927 6.39568 6.77743 6.97895 7.20946 7.31418 7.57327 7.75003 7.88237 8.06842 8.45361 8.51028 9.11571 9.68328 11.17458 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.045151 B = 0.002838 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.990996 B = 9864.935730 C = 9911.139894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.516 3.484 13 O -0.535 6.535 14 N -0.734 5.734 15 C 0.170 3.830 16 C 0.085 3.915 17 N -0.441 5.441 18 C 0.090 3.910 19 C -0.139 4.139 20 C -0.111 4.111 21 C 0.067 3.933 22 F -0.121 7.121 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.167 0.833 34 H 0.148 0.852 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 -28.082 -0.787 28.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.304 3.696 13 O -0.410 6.410 14 N -0.388 5.388 15 C 0.046 3.954 16 C -0.055 4.055 17 N -0.150 5.150 18 C -0.068 4.068 19 C -0.159 4.159 20 C -0.138 4.138 21 C 0.044 3.956 22 F -0.100 7.100 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.165 0.835 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.015 -27.343 -0.052 27.343 hybrid contribution -0.349 0.272 -1.022 1.114 sum -0.364 -27.071 -1.075 27.095 Atomic orbital electron populations 1.69953 1.06038 1.26622 1.51211 1.25019 0.94854 0.99230 0.95409 0.86650 0.79564 0.83065 0.78685 1.20229 1.21357 1.20227 1.21248 0.93177 0.91038 1.50170 0.92603 1.19129 0.93972 0.91438 0.97122 1.21456 0.98650 0.91458 1.01753 1.21848 0.98103 0.93899 1.03837 1.21287 0.90479 0.83313 0.74485 1.90682 1.17292 1.84527 1.48547 1.46047 1.09712 1.05257 1.77769 1.19990 0.90969 0.80155 1.04317 1.21447 0.98873 0.97821 0.87320 1.67616 1.09798 1.10223 1.27345 1.22941 0.93966 0.90727 0.99166 1.22174 1.00069 1.01465 0.92156 1.21736 0.97425 0.94065 1.00531 1.18637 1.00339 0.94089 0.82490 1.91574 1.90072 1.83446 1.44900 0.93033 0.96605 0.96600 0.92636 0.92649 0.89314 0.89252 0.76683 0.89122 0.89633 0.81558 0.83458 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.10 4.44 -26.73 -0.12 -2.22 16 11 C -0.14 -2.34 5.70 -27.88 -0.16 -2.50 16 12 C 0.52 8.65 7.83 -10.98 -0.09 8.56 16 13 O -0.54 -11.01 15.98 5.56 0.09 -10.92 16 14 N -0.73 -9.49 5.55 -61.47 -0.34 -9.83 16 15 C 0.17 2.05 5.78 -5.19 -0.03 2.02 16 16 C 0.08 0.86 6.16 -82.51 -0.51 0.35 16 17 N -0.44 -4.32 10.27 -9.42 -0.10 -4.41 16 18 C 0.09 0.58 11.18 -17.55 -0.20 0.39 16 19 C -0.14 -0.68 10.11 -39.45 -0.40 -1.07 16 20 C -0.11 -0.69 10.16 -39.21 -0.40 -1.09 16 21 C 0.07 0.60 7.27 -39.28 -0.29 0.32 16 22 F -0.12 -1.27 16.49 2.25 0.04 -1.24 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 27 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 28 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.40 4.27 8.46 -40.82 -0.35 3.92 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.06 7.63 -51.93 -0.40 0.66 16 33 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 35 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 313.85 15.07 4.73 4.73 Total: -1.00 -34.81 313.85 -7.10 -41.92 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -4.51 Total: -1.96 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.73 Total: -8.86 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.30 Total: -40.96 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.81 -7.10 -41.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594326214.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.745 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds