Wall clock time and date at job start Mon Mar 30 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99903 * 2 1 4 4 H 1.48498 * 109.47340 * 239.99523 * 3 2 1 5 5 H 1.48495 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46985 * 120.00076 * 3 2 1 7 7 C 1.37875 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00591 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99534 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46816 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46956 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46811 * 179.97438 * 11 10 9 13 13 O 1.21275 * 120.00168 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99752 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00189 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47108 * 179.97438 * 15 14 12 17 17 N 1.31865 * 119.63513 * 269.97587 * 16 15 14 18 18 C 1.31845 * 121.75130 * 179.67786 * 17 16 15 19 19 C 1.38238 * 120.81726 * 0.64271 * 18 17 16 20 20 C 1.38588 * 119.18753 * 359.39683 * 19 18 17 21 21 C 1.38413 * 119.63374 * 90.00121 * 16 15 14 22 22 F 1.35101 * 120.44736 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00164 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47365 * 60.00594 * 9 7 2 25 25 H 1.08996 * 109.47210 * 299.99979 * 9 7 2 26 26 H 1.08999 * 109.47478 * 60.00394 * 10 9 7 27 27 H 1.09000 * 109.47518 * 300.00061 * 10 9 7 28 28 H 1.08999 * 109.46612 * 59.99978 * 11 10 9 29 29 H 1.08996 * 109.47233 * 299.99915 * 11 10 9 30 30 H 0.97002 * 119.99912 * 0.02562 * 14 12 11 31 31 H 1.09002 * 109.46982 * 59.99756 * 15 14 12 32 32 H 1.08996 * 109.47044 * 299.99905 * 15 14 12 33 33 H 1.08000 * 119.59812 * 180.31887 * 18 17 16 34 34 H 1.08002 * 120.40978 * 179.67953 * 19 18 17 35 35 H 1.07999 * 120.80386 * 180.30037 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4597 -6.1325 -0.0005 13 8 3.6521 -5.9108 -0.0009 14 7 2.0105 -7.4032 -0.0006 15 6 2.9625 -8.5167 -0.0007 16 6 2.2089 -9.8218 -0.0002 17 7 1.8837 -10.3865 1.1462 18 6 1.2195 -11.5244 1.1954 19 6 0.8484 -12.1785 0.0354 20 6 1.1720 -11.6176 -1.1899 21 6 1.8664 -10.4148 -1.2030 22 9 2.2025 -9.8312 -2.3742 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.8534 -5.0450 -0.8897 29 1 0.8540 -5.0446 0.8903 30 1 1.0568 -7.5805 -0.0007 31 1 3.5891 -8.4590 0.8893 32 1 3.5891 -8.4589 -0.8906 33 1 0.9666 -11.9535 2.1537 34 1 0.3090 -13.1129 0.0834 35 1 0.8908 -12.1038 -2.1123 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594326214.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:47 Heat of formation + Delta-G solvation = -88.737788 kcal Electronic energy + Delta-G solvation = -18766.606364 eV Core-core repulsion = 15484.479987 eV Total energy + Delta-G solvation = -3282.126376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.10674 -41.34378 -40.58207 -36.41929 -35.95638 -34.06004 -33.51586 -32.32337 -29.96329 -27.87153 -25.61138 -24.61707 -23.37611 -22.29993 -21.31450 -18.89036 -18.66243 -18.33577 -18.02234 -17.50996 -16.92424 -16.81560 -16.50920 -16.42169 -15.32393 -14.99805 -14.92873 -14.68857 -14.34100 -14.24836 -14.15983 -13.78067 -13.75575 -13.07223 -12.99765 -12.60114 -12.51255 -12.42508 -11.55587 -11.48014 -11.29354 -11.05565 -10.84728 -10.66143 -10.53782 -10.24091 -10.00458 -8.19808 -6.29918 -0.26659 0.02349 1.39732 1.42935 1.51002 1.59848 2.06860 2.42145 2.65228 2.87791 3.11733 3.13030 3.49080 3.69338 3.85882 3.94163 4.20305 4.24981 4.35779 4.38470 4.54353 4.64863 4.79884 4.88722 4.96584 4.99644 5.09947 5.17860 5.27781 5.54408 5.55736 5.75757 5.87081 6.27498 6.42607 6.75507 6.85314 7.17368 7.38618 8.91660 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.045151 B = 0.002838 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.990996 B = 9864.935730 C = 9911.139894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.052 0.948 9 C 0.026 3.974 10 C -0.083 4.083 11 C -0.129 4.129 12 C 0.520 3.480 13 O -0.580 6.580 14 N -0.714 5.714 15 C 0.172 3.828 16 C 0.066 3.934 17 N -0.471 5.471 18 C 0.086 3.914 19 C -0.118 4.118 20 C -0.107 4.107 21 C 0.049 3.951 22 F -0.136 7.136 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.413 0.587 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.196 0.804 34 H 0.190 0.810 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 -29.984 -0.692 30.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.070 0.930 9 C -0.011 4.011 10 C -0.121 4.121 11 C -0.168 4.168 12 C 0.308 3.692 13 O -0.459 6.459 14 N -0.367 5.367 15 C 0.048 3.952 16 C -0.072 4.072 17 N -0.180 5.180 18 C -0.072 4.072 19 C -0.137 4.137 20 C -0.133 4.133 21 C 0.027 3.973 22 F -0.115 7.115 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.249 0.751 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.212 0.788 34 H 0.207 0.793 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.994 -29.281 0.038 29.298 hybrid contribution -0.129 0.714 -1.015 1.248 sum -1.124 -28.567 -0.977 28.606 Atomic orbital electron populations 1.70060 1.07517 1.27878 1.51541 1.25915 0.95838 1.03092 0.94654 0.85547 0.78386 0.78333 0.79074 1.19413 1.20304 1.19418 1.21678 0.93384 0.92824 1.50837 0.93007 1.19014 0.94185 0.92332 0.95550 1.21175 0.97671 0.92824 1.00422 1.21682 0.97832 0.91482 1.05825 1.21103 0.89543 0.84353 0.74191 1.90667 1.18921 1.85300 1.51022 1.45829 1.10724 1.04408 1.75760 1.19912 0.90949 0.81126 1.03239 1.21023 1.00504 0.97401 0.88254 1.67549 1.11136 1.12006 1.27312 1.23542 0.92766 0.89669 1.01247 1.22631 0.98240 1.02102 0.90730 1.22113 0.96106 0.92745 1.02371 1.18848 1.01542 0.95361 0.81560 1.91534 1.90445 1.83943 1.45575 0.92633 0.98036 0.98044 0.93982 0.93972 0.87297 0.87288 0.75115 0.90393 0.90521 0.78760 0.79304 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 2 C 0.00 0.17 5.46 84.65 0.46 0.64 16 3 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.55 -32.90 9.11 25.60 0.23 -32.67 16 8 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.08 -3.75 4.44 30.60 0.14 -3.62 16 11 C -0.13 -4.37 5.70 29.85 0.17 -4.20 16 12 C 0.52 17.60 7.83 87.66 0.69 18.29 16 13 O -0.58 -24.63 15.98 -3.01 -0.05 -24.68 16 14 N -0.71 -18.45 5.55 -466.79 -2.59 -21.04 16 15 C 0.17 4.27 5.78 85.63 0.50 4.77 16 16 C 0.07 1.32 6.16 42.60 0.26 1.58 16 17 N -0.47 -8.65 10.27 -183.72 -1.89 -10.53 16 18 C 0.09 0.86 11.18 84.69 0.95 1.80 16 19 C -0.12 -0.66 10.11 22.35 0.23 -0.44 16 20 C -0.11 -1.02 10.16 22.51 0.23 -0.79 16 21 C 0.05 0.84 7.27 22.47 0.16 1.00 16 22 F -0.14 -2.84 16.49 44.97 0.74 -2.10 16 23 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 24 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 25 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.04 1.99 8.10 -2.39 -0.02 1.97 16 27 H 0.04 1.99 8.10 -2.39 -0.02 1.97 16 28 H 0.11 3.27 8.14 -2.39 -0.02 3.26 16 29 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 30 H 0.41 8.48 8.46 -92.71 -0.78 7.69 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 2.02 7.63 -2.39 -0.02 2.00 16 33 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.19 -0.48 8.06 -2.91 -0.02 -0.50 16 35 H 0.18 0.73 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -77.17 313.85 3.01 -74.16 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 0.32 Total: 5.32 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 4.16 Total: -12.06 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -4.19 Total: -88.49 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.05 Total: -24.68 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.74 Total: -2.10 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.17 3.01 -74.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594326214.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.576 kcal (2) G-P(sol) polarization free energy of solvation -77.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds