Wall clock time and date at job start Mon Mar 30 2020 05:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30837 * 125.84200 * 2 1 4 4 N 1.40065 * 108.38915 * 179.72021 * 3 2 1 5 5 C 1.46498 * 126.04311 * 180.26659 * 4 3 2 6 6 C 1.35250 * 107.91429 * 0.42474 * 4 3 2 7 7 N 1.39212 * 126.22187 * 179.84591 * 6 4 3 8 8 C 1.47955 * 110.99856 * 125.36790 * 7 6 4 9 9 C 1.53935 * 86.30145 * 137.63922 * 8 7 6 10 10 C 1.50702 * 113.73484 * 221.86442 * 9 8 7 11 11 H 1.08000 * 119.99774 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99914 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00050 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99953 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47353 * 59.99704 * 14 12 10 16 16 H 1.48503 * 109.47167 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.46938 * 299.99740 * 14 12 10 18 18 C 1.48301 * 111.10940 * 224.62198 * 7 6 4 19 19 C 1.36167 * 107.55822 * 359.58343 * 6 4 3 20 20 N 1.48042 * 126.09397 * 180.30234 * 19 6 4 21 21 O 1.21795 * 120.00246 * 84.69205 * 20 19 6 22 22 O 1.21801 * 119.99677 * 264.69544 * 20 19 6 23 23 H 1.08998 * 109.47480 * 270.02817 * 1 2 3 24 24 H 1.09006 * 109.46299 * 30.02565 * 1 2 3 25 25 H 1.08998 * 109.46956 * 150.02201 * 1 2 3 26 26 H 1.09003 * 109.47233 * 265.11908 * 5 4 3 27 27 H 1.08998 * 109.47002 * 25.11820 * 5 4 3 28 28 H 1.09008 * 109.47108 * 145.11824 * 5 4 3 29 29 H 1.09001 * 113.76191 * 23.26983 * 8 7 6 30 30 H 1.09006 * 113.76365 * 252.01227 * 8 7 6 31 31 H 1.09003 * 113.73185 * 90.58076 * 9 8 7 32 32 H 0.96995 * 120.00362 * 179.97438 * 13 12 10 33 33 H 1.08993 * 113.75845 * 108.13556 * 18 7 6 34 34 H 1.09005 * 113.85681 * 336.78477 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0606 0.0000 4 7 3.6093 0.6405 0.0065 5 6 4.7868 1.5120 0.0142 6 6 3.6202 -0.7119 0.0009 7 7 4.7499 -1.5254 0.0014 8 6 4.7090 -2.4888 1.1236 9 6 5.2193 -3.5333 0.1146 10 6 4.5453 -4.8756 0.2379 11 1 3.7809 -5.0294 0.9852 12 6 4.9038 -5.9070 -0.6040 13 7 5.8343 -5.7195 -1.5143 14 14 4.0679 -7.5705 -0.4516 15 1 2.6087 -7.4138 -0.6775 16 1 4.6289 -8.5010 -1.4639 17 1 4.3022 -8.1195 0.9082 18 6 4.6113 -2.6325 -0.9755 19 6 2.3253 -1.1332 0.0005 20 7 1.8661 -2.5406 0.0015 21 8 1.7693 -3.1489 1.0522 22 8 1.5850 -3.0901 -1.0485 23 1 -0.3634 0.0005 1.0276 24 1 -0.3632 0.8898 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 5.1364 1.6595 -1.0077 27 1 4.5230 2.4754 0.4505 28 1 5.5773 1.0496 0.6054 29 1 3.7035 -2.6900 1.4933 30 1 5.4181 -2.2650 1.9206 31 1 6.3060 -3.6048 0.0689 32 1 6.0868 -6.4451 -2.1064 33 1 5.2430 -2.5222 -1.8568 34 1 3.5778 -2.8770 -1.2212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596432985.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:02 Heat of formation + Delta-G solvation = 126.936475 kcal Electronic energy + Delta-G solvation = -21251.771517 eV Core-core repulsion = 17998.917440 eV Total energy + Delta-G solvation = -3252.854077 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.39279 -40.88320 -38.86516 -35.88643 -34.31327 -32.83074 -31.02819 -29.78421 -28.26167 -26.45817 -25.38255 -24.56867 -24.03411 -20.92708 -20.28710 -18.96634 -18.50057 -18.15570 -17.02001 -16.31223 -15.98177 -15.68069 -15.19007 -14.38444 -14.23895 -13.80049 -13.61566 -13.52830 -13.01874 -12.59175 -12.40910 -12.05168 -11.94161 -11.57455 -10.98970 -10.93327 -10.89796 -10.55104 -10.46933 -10.26392 -10.13305 -9.55919 -9.35695 -9.26460 -9.04939 -8.57452 -8.43495 -6.07427 -4.12131 1.11395 1.36480 1.61636 2.05245 2.40560 3.39683 3.42314 3.49269 3.96753 4.28580 4.47779 4.48712 4.95847 5.06070 5.11489 5.21448 5.33323 5.33972 5.34818 5.57036 5.70820 5.86756 5.97362 6.07242 6.18930 6.32383 6.57433 6.64220 6.79614 6.94181 7.16660 7.50574 7.62264 7.90928 8.21102 8.24140 8.93354 9.55609 11.02346 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025697 B = 0.007408 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.342581 B = 3778.613096 C = 4507.556187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.130 3.870 3 N -0.280 5.280 4 N -0.347 5.347 5 C 0.107 3.893 6 C 0.331 3.669 7 N -0.465 5.465 8 C -0.005 4.005 9 C 0.051 3.949 10 C -0.517 4.517 11 H 0.068 0.932 12 C 0.072 3.928 13 N -0.889 5.889 14 Si 0.894 3.106 15 H -0.269 1.269 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.005 3.995 19 C -0.225 4.225 20 N 0.061 4.939 21 O -0.126 6.126 22 O -0.137 6.137 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 12.670 2.744 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.038 4.038 3 N -0.103 5.103 4 N -0.127 5.127 5 C -0.033 4.033 6 C 0.104 3.896 7 N -0.190 5.190 8 C -0.131 4.131 9 C 0.032 3.968 10 C -0.555 4.555 11 H 0.087 0.913 12 C -0.132 4.132 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.194 1.194 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.122 4.122 19 C -0.321 4.321 20 N 0.591 4.409 21 O -0.351 6.351 22 O -0.357 6.357 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.914 15.196 2.509 15.891 hybrid contribution -0.996 -2.266 -0.101 2.477 sum -4.909 12.930 2.409 14.039 Atomic orbital electron populations 1.20382 0.85328 1.04437 1.04036 1.21920 0.97414 0.87350 0.97089 1.77488 0.85521 1.20372 1.26872 1.48353 1.06148 1.03195 1.55007 1.21999 0.83260 0.93755 1.04294 1.20004 0.90848 0.86085 0.92622 1.66162 1.28291 1.14664 1.09835 1.24765 1.02921 0.91100 0.94317 1.20309 0.97950 0.91969 0.86577 1.20999 1.21365 0.94551 1.18545 0.91341 1.24985 0.94417 0.99008 0.94776 1.69944 1.29901 1.33045 1.19705 0.86593 0.80474 0.83013 0.77763 1.19422 1.21420 1.20088 1.24973 1.02800 0.86809 0.97576 1.20955 0.94798 0.83493 1.32904 1.42320 0.97745 1.00644 1.00210 1.94482 1.55081 1.64338 1.21164 1.94521 1.51249 1.68865 1.21092 0.89337 0.89392 0.90068 0.89995 0.88822 0.88314 0.89624 0.90160 0.91428 0.92715 0.89893 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.44 36.01 0.38 -0.62 16 2 C 0.13 2.11 7.21 -82.44 -0.59 1.51 16 3 N -0.28 -4.45 12.56 33.65 0.42 -4.03 16 4 N -0.35 -5.50 4.02 -67.24 -0.27 -5.77 16 5 C 0.11 1.17 11.39 59.85 0.68 1.85 16 6 C 0.33 6.22 6.10 -153.40 -0.94 5.28 16 7 N -0.47 -9.32 6.27 -175.76 -1.10 -10.42 16 8 C 0.00 -0.10 7.25 -2.77 -0.02 -0.12 16 9 C 0.05 1.26 3.61 -90.83 -0.33 0.93 16 10 C -0.52 -13.96 8.77 -34.44 -0.30 -14.27 16 11 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 12 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 13 N -0.89 -25.30 13.27 55.43 0.74 -24.57 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.00 0.11 7.25 -2.58 -0.02 0.09 16 19 C -0.23 -4.31 5.70 -80.10 -0.46 -4.77 16 20 N 0.06 1.28 2.93 33.89 0.10 1.38 16 21 O -0.13 -2.74 16.92 -29.46 -0.50 -3.24 16 22 O -0.14 -3.07 17.29 -29.46 -0.51 -3.58 16 23 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 29 H 0.09 1.88 4.52 -51.93 -0.23 1.65 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.07 1.76 8.13 -51.93 -0.42 1.34 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 34 H 0.08 1.95 4.02 -51.93 -0.21 1.75 16 LS Contribution 295.24 15.07 4.45 4.45 Total: -1.00 -30.52 295.24 -7.18 -37.70 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -3.79 Total: -0.19 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.70 Total: -8.24 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.11 Total: -43.41 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -1.01 Total: -6.82 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.52 -7.18 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596432985.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.634 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds