Wall clock time and date at job start Mon Mar 30 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30837 * 125.84200 * 2 1 4 4 N 1.40065 * 108.38915 * 179.72021 * 3 2 1 5 5 C 1.46498 * 126.04311 * 180.26659 * 4 3 2 6 6 C 1.35250 * 107.91429 * 0.42474 * 4 3 2 7 7 N 1.39212 * 126.22187 * 179.84591 * 6 4 3 8 8 C 1.47955 * 110.99856 * 125.36790 * 7 6 4 9 9 C 1.53935 * 86.30145 * 137.63922 * 8 7 6 10 10 C 1.50702 * 113.73484 * 221.86442 * 9 8 7 11 11 H 1.08000 * 119.99774 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99914 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00050 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99953 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47353 * 59.99704 * 14 12 10 16 16 H 1.48503 * 109.47167 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.46938 * 299.99740 * 14 12 10 18 18 C 1.48301 * 111.10940 * 224.62198 * 7 6 4 19 19 C 1.36167 * 107.55822 * 359.58343 * 6 4 3 20 20 N 1.48042 * 126.09397 * 180.30234 * 19 6 4 21 21 O 1.21795 * 120.00246 * 84.69205 * 20 19 6 22 22 O 1.21801 * 119.99677 * 264.69544 * 20 19 6 23 23 H 1.08998 * 109.47480 * 270.02817 * 1 2 3 24 24 H 1.09006 * 109.46299 * 30.02565 * 1 2 3 25 25 H 1.08998 * 109.46956 * 150.02201 * 1 2 3 26 26 H 1.09003 * 109.47233 * 265.11908 * 5 4 3 27 27 H 1.08998 * 109.47002 * 25.11820 * 5 4 3 28 28 H 1.09008 * 109.47108 * 145.11824 * 5 4 3 29 29 H 1.09001 * 113.76191 * 23.26983 * 8 7 6 30 30 H 1.09006 * 113.76365 * 252.01227 * 8 7 6 31 31 H 1.09003 * 113.73185 * 90.58076 * 9 8 7 32 32 H 0.96995 * 120.00362 * 179.97438 * 13 12 10 33 33 H 1.08993 * 113.75845 * 108.13556 * 18 7 6 34 34 H 1.09005 * 113.85681 * 336.78477 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0606 0.0000 4 7 3.6093 0.6405 0.0065 5 6 4.7868 1.5120 0.0142 6 6 3.6202 -0.7119 0.0009 7 7 4.7499 -1.5254 0.0014 8 6 4.7090 -2.4888 1.1236 9 6 5.2193 -3.5333 0.1146 10 6 4.5453 -4.8756 0.2379 11 1 3.7809 -5.0294 0.9852 12 6 4.9038 -5.9070 -0.6040 13 7 5.8343 -5.7195 -1.5143 14 14 4.0679 -7.5705 -0.4516 15 1 2.6087 -7.4138 -0.6775 16 1 4.6289 -8.5010 -1.4639 17 1 4.3022 -8.1195 0.9082 18 6 4.6113 -2.6325 -0.9755 19 6 2.3253 -1.1332 0.0005 20 7 1.8661 -2.5406 0.0015 21 8 1.7693 -3.1489 1.0522 22 8 1.5850 -3.0901 -1.0485 23 1 -0.3634 0.0005 1.0276 24 1 -0.3632 0.8898 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 5.1364 1.6595 -1.0077 27 1 4.5230 2.4754 0.4505 28 1 5.5773 1.0496 0.6054 29 1 3.7035 -2.6900 1.4933 30 1 5.4181 -2.2650 1.9206 31 1 6.3060 -3.6048 0.0689 32 1 6.0868 -6.4451 -2.1064 33 1 5.2430 -2.5222 -1.8568 34 1 3.5778 -2.8770 -1.2212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596432985.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:01 Heat of formation + Delta-G solvation = 107.356481 kcal Electronic energy + Delta-G solvation = -21252.620570 eV Core-core repulsion = 17998.917440 eV Total energy + Delta-G solvation = -3253.703129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.88199 -42.39778 -40.54020 -37.55959 -35.51631 -34.80654 -32.61361 -30.79880 -29.94904 -27.97741 -27.16291 -26.05897 -25.69689 -22.43518 -21.70734 -20.79562 -19.95737 -19.79336 -18.74093 -17.96834 -17.36736 -17.23300 -16.77632 -16.30148 -15.89802 -15.18942 -14.73466 -14.69333 -14.16608 -13.99074 -13.88672 -13.44864 -13.25089 -13.17793 -12.84473 -12.68999 -12.65524 -12.37239 -12.16011 -12.02291 -11.92343 -11.45162 -11.21022 -10.64256 -10.54406 -10.43051 -10.30998 -8.17706 -6.27340 -0.58555 -0.06516 0.19715 0.74331 1.05998 1.45482 1.49170 1.56219 2.42761 2.54913 2.99119 3.12309 3.17780 3.73960 3.88556 4.07354 4.10573 4.20972 4.26553 4.33162 4.44986 4.48205 4.55298 4.59676 4.65130 4.78201 4.91491 4.92023 5.26418 5.31439 5.50360 5.71187 5.80922 6.07079 6.19443 6.48503 6.80988 7.42733 8.91899 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025697 B = 0.007408 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.342581 B = 3778.613096 C = 4507.556187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.130 3.870 3 N -0.271 5.271 4 N -0.334 5.334 5 C 0.094 3.906 6 C 0.308 3.692 7 N -0.445 5.445 8 C 0.006 3.994 9 C 0.040 3.960 10 C -0.526 4.526 11 H 0.060 0.940 12 C 0.025 3.975 13 N -0.918 5.918 14 Si 0.948 3.052 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.266 1.266 18 C 0.010 3.990 19 C -0.243 4.243 20 N 0.066 4.934 21 O -0.132 6.132 22 O -0.170 6.170 23 H 0.108 0.892 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.073 0.927 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 14.381 3.476 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 N -0.094 5.094 4 N -0.113 5.113 5 C -0.045 4.045 6 C 0.080 3.920 7 N -0.168 5.168 8 C -0.120 4.120 9 C 0.021 3.979 10 C -0.564 4.564 11 H 0.078 0.922 12 C -0.175 4.175 13 N -0.556 5.556 14 Si 0.773 3.227 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.190 1.190 18 C -0.117 4.117 19 C -0.339 4.339 20 N 0.593 4.407 21 O -0.359 6.359 22 O -0.385 6.385 23 H 0.126 0.874 24 H 0.132 0.868 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.142 0.858 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.529 16.932 3.216 17.820 hybrid contribution -0.790 -2.660 -0.283 2.789 sum -5.319 14.272 2.933 15.511 Atomic orbital electron populations 1.20577 0.82545 1.05457 1.05600 1.22519 0.99150 0.85948 0.96098 1.77515 0.85478 1.19912 1.26512 1.48783 1.07295 1.02302 1.52934 1.22483 0.81905 0.94295 1.05775 1.19899 0.90114 0.87335 0.94680 1.65976 1.29016 1.13645 1.08206 1.24591 1.02802 0.90118 0.94507 1.20216 0.96614 0.92161 0.88956 1.21217 1.21081 0.95949 1.18113 0.92158 1.25676 0.95050 1.02137 0.94633 1.70033 1.31160 1.33913 1.20498 0.85746 0.79135 0.79554 0.78226 1.19815 1.20801 1.19049 1.24653 1.01548 0.88159 0.97380 1.21217 0.95806 0.82495 1.34394 1.42575 0.96970 1.01467 0.99642 1.94455 1.54970 1.65255 1.21241 1.94512 1.52675 1.69920 1.21375 0.87390 0.86761 0.90626 0.88498 0.85783 0.87649 0.90410 0.87716 0.93456 0.92705 0.90822 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 10.44 71.24 0.74 -1.04 16 2 C 0.13 3.94 7.21 43.08 0.31 4.25 16 3 N -0.27 -7.84 12.56 -47.44 -0.60 -8.43 16 4 N -0.33 -9.70 4.02 -366.64 -1.47 -11.18 16 5 C 0.09 1.73 11.39 127.77 1.46 3.19 16 6 C 0.31 11.15 6.10 131.42 0.80 11.95 16 7 N -0.45 -17.50 6.27 -709.98 -4.45 -21.95 16 8 C 0.01 0.26 7.25 86.41 0.63 0.89 16 9 C 0.04 1.98 3.61 -10.90 -0.04 1.94 16 10 C -0.53 -28.85 8.77 25.60 0.22 -28.63 16 11 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 12 C 0.03 1.41 5.46 84.65 0.46 1.87 16 13 N -0.92 -53.14 13.27 21.45 0.28 -52.86 16 14 Si 0.95 44.52 29.54 68.60 2.03 46.54 16 15 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 C 0.01 0.47 7.25 86.34 0.63 1.10 16 19 C -0.24 -9.05 5.70 36.26 0.21 -8.84 16 20 N 0.07 2.80 2.93 -46.71 -0.14 2.67 16 21 O -0.13 -5.77 16.92 18.89 0.32 -5.45 16 22 O -0.17 -7.78 17.29 18.88 0.33 -7.46 16 23 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.11 1.83 8.14 -2.38 -0.02 1.82 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.11 1.86 8.14 -2.38 -0.02 1.85 16 29 H 0.08 3.39 4.52 -2.39 -0.01 3.38 16 30 H 0.10 3.81 8.14 -2.38 -0.02 3.79 16 31 H 0.05 2.53 8.13 -2.39 -0.02 2.51 16 32 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.07 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.07 3.31 4.02 -2.38 -0.01 3.30 16 Total: -1.00 -65.91 295.24 2.85 -63.06 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.13 Total: 8.37 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 5.42 Total: -13.31 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -6.37 Total: -91.75 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.65 Total: -12.91 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -65.91 2.85 -63.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596432985.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.414 kcal (2) G-P(sol) polarization free energy of solvation -65.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds