Wall clock time and date at job start Mon Mar 30 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46996 * 120.00312 * 8 6 4 11 11 H 1.48495 * 109.46665 * 239.99993 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 O 1.21281 * 119.99736 * 119.99813 * 12 2 1 14 14 N 1.34770 * 120.00019 * 300.00531 * 12 2 1 15 15 C 1.46512 * 119.99646 * 179.97438 * 14 12 2 16 16 H 1.08994 * 109.47002 * 324.99530 * 15 14 12 17 17 C 1.52996 * 109.46801 * 85.00197 * 15 14 12 18 18 C 1.50699 * 109.46933 * 204.99755 * 15 14 12 19 19 C 1.38235 * 120.40558 * 319.72879 * 18 15 14 20 20 N 1.31848 * 120.82120 * 179.72536 * 19 18 15 21 21 C 1.31879 * 121.74553 * 0.53537 * 20 19 18 22 22 C 1.38422 * 120.72971 * 359.75169 * 21 20 19 23 23 F 1.35094 * 120.44682 * 179.97438 * 22 21 20 24 24 C 1.38587 * 120.40431 * 140.00012 * 18 15 14 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 29 29 H 0.96992 * 120.00518 * 359.97438 * 14 12 2 30 30 H 1.09000 * 109.46718 * 179.97438 * 17 15 14 31 31 H 1.09007 * 109.47011 * 299.99445 * 17 15 14 32 32 H 1.08995 * 109.47370 * 59.99976 * 17 15 14 33 33 H 1.08003 * 119.59288 * 359.97438 * 19 18 15 34 34 H 1.08002 * 119.63139 * 179.73001 * 21 20 19 35 35 H 1.07996 * 120.80069 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 3.1456 -2.2874 -3.6039 10 1 1.1662 -1.5863 -4.8162 11 1 3.1467 -0.1870 -4.8165 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1947 -0.9411 3.6507 16 1 2.2310 -2.0138 3.4612 17 6 3.5974 -0.4361 3.9948 18 6 1.2648 -0.6659 4.8042 19 6 0.7302 0.5958 4.9863 20 7 -0.0884 0.8443 5.9895 21 6 -0.4215 -0.0882 6.8606 22 6 0.0786 -1.3738 6.7464 23 9 -0.2660 -2.3245 7.6423 24 6 0.9395 -1.6733 5.6986 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1620 -3.4843 29 1 1.1494 0.5388 2.5436 30 1 3.9602 -0.9499 4.8850 31 1 4.2700 -0.6351 3.1604 32 1 3.5610 0.6367 4.1843 33 1 0.9831 1.3870 4.2960 34 1 -1.0917 0.1541 7.6722 35 1 1.3460 -2.6673 5.5837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597482478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:10 Heat of formation + Delta-G solvation = -76.305674 kcal Electronic energy + Delta-G solvation = -19690.761166 eV Core-core repulsion = 16409.173887 eV Total energy + Delta-G solvation = -3281.587280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.04295 -41.56306 -40.38733 -36.92222 -35.73737 -33.73816 -32.70639 -31.69476 -30.32679 -27.18491 -25.83780 -24.92178 -24.44144 -22.25936 -21.10016 -18.86748 -18.43016 -18.19945 -17.84760 -17.55709 -16.88578 -16.66007 -16.31728 -15.85435 -15.08632 -14.96398 -14.86491 -14.62736 -14.32987 -14.19475 -13.82952 -13.53742 -13.36560 -12.97301 -12.89956 -12.64272 -12.58008 -12.46319 -12.17230 -12.00860 -11.01796 -10.92614 -10.70104 -10.59695 -10.31750 -10.08820 -9.93859 -8.13695 -6.23585 -0.21544 -0.04467 1.40397 1.42964 1.55774 1.93613 2.26345 2.47097 2.56658 2.91070 3.16349 3.27386 3.51149 3.69934 3.77628 4.09230 4.10936 4.24277 4.42031 4.60860 4.72466 4.76378 4.78260 4.84809 4.95186 5.00882 5.06328 5.24078 5.49877 5.51742 5.58621 5.76779 5.95350 6.22837 6.68895 6.72756 6.87232 7.41626 7.54095 8.92184 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035560 B = 0.004074 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.218097 B = 6871.182030 C = 7096.240923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.023 3.977 3 H 0.045 0.955 4 C -0.526 4.526 5 H 0.049 0.951 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.527 3.473 13 O -0.581 6.581 14 N -0.723 5.723 15 C 0.187 3.813 16 H 0.083 0.917 17 C -0.153 4.153 18 C -0.108 4.108 19 C 0.095 3.905 20 N -0.468 5.468 21 C 0.074 3.926 22 C 0.047 3.953 23 F -0.131 7.131 24 C -0.099 4.099 25 H 0.021 0.979 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.264 0.736 29 H 0.408 0.592 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.175 0.825 34 H 0.193 0.807 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 0.062 19.018 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.002 3.998 3 H 0.062 0.938 4 C -0.565 4.565 5 H 0.068 0.932 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.200 1.200 12 C 0.317 3.683 13 O -0.460 6.460 14 N -0.377 5.377 15 C 0.081 3.919 16 H 0.101 0.899 17 C -0.211 4.211 18 C -0.111 4.111 19 C -0.062 4.062 20 N -0.175 5.175 21 C -0.084 4.084 22 C 0.026 3.974 23 F -0.109 7.109 24 C -0.126 4.126 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.245 0.755 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.192 0.808 34 H 0.209 0.791 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.864 0.283 18.932 19.026 hybrid contribution 0.367 -1.170 -0.962 1.559 sum -1.497 -0.887 17.970 18.054 Atomic orbital electron populations 1.21560 0.95229 0.99334 1.01679 1.18826 0.95175 0.96162 0.89669 0.93766 1.21322 1.31414 1.12671 0.91079 0.93233 1.25576 0.95240 0.95744 1.01391 1.69953 1.37303 1.23588 1.24189 0.85571 0.78297 0.78630 0.79560 1.20391 1.20144 1.20047 1.21463 0.78017 0.83550 0.85304 1.90515 1.39658 1.28432 1.87371 1.46155 1.54621 1.32483 1.04425 1.19666 0.92487 0.98197 0.81516 0.89936 1.22128 0.94316 1.02576 1.02051 1.20737 0.98846 0.94670 0.96845 1.22889 0.92443 0.95756 0.95119 1.67848 1.12147 1.34399 1.03088 1.23365 0.98963 0.87116 0.99005 1.18788 1.00033 0.88124 0.90505 1.91531 1.90675 1.63075 1.65647 1.21719 0.96356 1.01535 0.92950 0.95971 0.93056 0.91161 0.92672 0.75487 0.89712 0.93525 0.90801 0.80772 0.79053 0.82006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.87 71.98 0.64 -4.70 16 2 C 0.02 1.11 2.64 -12.29 -0.03 1.08 16 3 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.53 -29.91 8.37 25.60 0.21 -29.70 16 5 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -50.49 11.32 21.45 0.24 -50.25 16 8 Si 0.95 44.47 29.54 68.60 2.03 46.49 16 9 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 C 0.53 22.86 7.11 87.66 0.62 23.48 16 13 O -0.58 -29.38 15.12 -3.03 -0.05 -29.42 16 14 N -0.72 -22.40 4.92 -446.10 -2.20 -24.60 16 15 C 0.19 4.78 2.79 44.24 0.12 4.90 16 16 H 0.08 2.41 7.47 -2.39 -0.02 2.39 16 17 C -0.15 -3.50 9.46 71.98 0.68 -2.82 16 18 C -0.11 -2.25 4.96 -19.78 -0.10 -2.35 16 19 C 0.09 1.90 10.22 84.69 0.87 2.77 16 20 N -0.47 -9.65 10.36 -195.65 -2.03 -11.68 16 21 C 0.07 1.29 11.17 84.73 0.95 2.24 16 22 C 0.05 0.86 7.35 22.47 0.17 1.03 16 23 F -0.13 -2.44 17.28 44.97 0.78 -1.66 16 24 C -0.10 -1.87 9.81 22.51 0.22 -1.65 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 27 H 0.07 3.49 6.07 -2.39 -0.01 3.47 16 28 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 29 H 0.41 10.60 6.33 -92.71 -0.59 10.02 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.18 2.97 6.94 -2.91 -0.02 2.95 16 34 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -66.36 304.19 4.10 -62.26 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.53 Total: 13.06 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 4.80 Total: -4.19 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -3.98 Total: -86.53 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.05 Total: -29.42 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -66.36 4.10 -62.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597482478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.047 kcal (2) G-P(sol) polarization free energy of solvation -66.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds