Wall clock time and date at job start Mon Mar 30 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47211 * 119.99441 * 2 1 3 5 5 C 1.34773 * 120.00032 * 275.00347 * 4 2 1 6 6 O 1.21278 * 120.00180 * 359.97438 * 5 4 2 7 7 C 1.50708 * 120.00139 * 180.02562 * 5 4 2 8 8 H 1.09008 * 109.46737 * 300.00018 * 7 5 4 9 9 C 1.52997 * 109.46692 * 59.99632 * 7 5 4 10 10 C 1.50693 * 109.47214 * 179.97438 * 7 5 4 11 11 H 1.07996 * 120.00191 * 359.97438 * 10 7 5 12 12 C 1.37880 * 119.99697 * 179.97438 * 10 7 5 13 13 N 1.31517 * 119.99600 * 180.02562 * 12 10 7 14 14 Si 1.86797 * 120.00331 * 0.02562 * 12 10 7 15 15 H 1.48502 * 109.47059 * 89.99447 * 14 12 10 16 16 H 1.48497 * 109.47153 * 210.00059 * 14 12 10 17 17 H 1.48500 * 109.46937 * 329.99667 * 14 12 10 18 18 C 1.50696 * 109.47327 * 239.99781 * 2 1 3 19 19 C 1.38232 * 120.40530 * 279.97488 * 18 2 1 20 20 N 1.31848 * 120.82074 * 179.97438 * 19 18 2 21 21 C 1.31870 * 121.75267 * 0.02703 * 20 19 18 22 22 C 1.38422 * 120.72342 * 359.73647 * 21 20 19 23 23 F 1.35106 * 120.44296 * 180.26410 * 22 21 20 24 24 C 1.38596 * 120.40584 * 99.99836 * 18 2 1 25 25 H 1.09007 * 109.46812 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47310 * 299.99973 * 1 2 3 27 27 H 1.09003 * 109.47157 * 60.00647 * 1 2 3 28 28 H 0.97004 * 119.99920 * 95.00315 * 4 2 1 29 29 H 1.08997 * 109.47362 * 60.01082 * 9 7 5 30 30 H 1.09007 * 109.46652 * 180.02562 * 9 7 5 31 31 H 1.08999 * 109.47842 * 299.99850 * 9 7 5 32 32 H 0.96999 * 119.99426 * 180.02562 * 13 12 10 33 33 H 1.08003 * 119.58907 * 0.02562 * 19 18 2 34 34 H 1.07999 * 119.64144 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.79700 * 359.95088 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8590 1.1588 2.4114 7 6 2.6500 -0.7282 3.5876 8 1 1.9777 -1.5506 3.8326 9 6 4.0527 -1.2781 3.3214 10 6 2.7011 0.2403 4.7409 11 1 2.3999 1.2674 4.5973 12 6 3.1323 -0.1850 5.9796 13 7 3.1764 0.6602 6.9863 14 14 3.6538 -1.9614 6.2279 15 1 5.1069 -2.0938 5.9519 16 1 3.3769 -2.3673 7.6292 17 1 2.8920 -2.8352 5.2998 18 6 2.0324 -0.7104 -1.2304 19 6 2.0709 -2.0915 -1.2741 20 7 2.5084 -2.7215 -2.3465 21 6 2.9248 -2.0682 -3.4136 22 6 2.9111 -0.6844 -3.4457 23 9 3.3340 -0.0209 -4.5440 24 6 2.4619 0.0129 -2.3318 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 2.2491 -1.6317 1.1527 29 1 4.7249 -0.4558 3.0764 30 1 4.4162 -1.7921 4.2112 31 1 4.0162 -1.9786 2.4871 32 1 3.4801 0.3611 7.8576 33 1 1.7377 -2.6616 -0.4194 34 1 3.2759 -2.6188 -4.2738 35 1 2.4426 1.0928 -2.3260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597482479.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:14 Heat of formation + Delta-G solvation = -46.634775 kcal Electronic energy + Delta-G solvation = -19758.445314 eV Core-core repulsion = 16478.144661 eV Total energy + Delta-G solvation = -3280.300653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -49.28555 -40.67824 -39.03202 -35.74678 -33.87033 -32.67578 -31.56308 -30.78216 -29.40684 -25.16466 -24.89809 -24.13209 -23.13382 -21.10650 -19.63577 -17.84787 -17.53083 -17.09774 -16.76004 -16.14237 -16.08134 -15.41089 -14.61232 -14.53667 -14.21032 -13.93317 -13.76121 -13.44227 -13.31355 -12.97930 -12.76558 -12.37658 -12.33664 -11.98879 -11.65475 -11.46382 -11.00290 -10.63635 -10.32641 -10.10496 -9.90858 -9.66169 -9.26947 -9.13157 -8.77876 -8.74596 -8.59130 -6.07253 -4.07845 0.54905 0.72814 3.21978 3.23367 3.29081 3.35290 3.48298 3.50759 3.75279 4.06663 4.30134 4.35893 4.41310 4.53557 4.89253 5.04744 5.20436 5.24428 5.42493 5.47012 5.57568 5.67815 5.73098 6.00743 6.08283 6.18601 6.25986 6.28286 6.40659 6.68387 6.81058 7.12409 7.45505 7.50678 7.99766 8.51601 8.99255 9.12347 9.51486 11.05651 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031691 B = 0.004435 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.324429 B = 6311.699260 C = 6667.218048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.185 3.815 3 H 0.100 0.900 4 N -0.744 5.744 5 C 0.532 3.468 6 O -0.527 6.527 7 C -0.004 4.004 8 H 0.053 0.947 9 C -0.145 4.145 10 C -0.507 4.507 11 H 0.093 0.907 12 C 0.071 3.929 13 N -0.895 5.895 14 Si 0.884 3.116 15 H -0.278 1.278 16 H -0.295 1.295 17 H -0.267 1.267 18 C -0.104 4.104 19 C 0.095 3.905 20 N -0.452 5.452 21 C 0.069 3.931 22 C 0.051 3.949 23 F -0.130 7.130 24 C -0.100 4.100 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.394 0.606 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 -6.625 -20.013 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.079 3.921 3 H 0.118 0.882 4 N -0.400 5.400 5 C 0.320 3.680 6 O -0.401 6.401 7 C -0.026 4.026 8 H 0.071 0.929 9 C -0.203 4.203 10 C -0.545 4.545 11 H 0.111 0.889 12 C -0.131 4.131 13 N -0.533 5.533 14 Si 0.714 3.286 15 H -0.205 1.205 16 H -0.223 1.223 17 H -0.192 1.192 18 C -0.106 4.106 19 C -0.062 4.062 20 N -0.159 5.159 21 C -0.090 4.090 22 C 0.030 3.970 23 F -0.109 7.109 24 C -0.127 4.127 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.229 0.771 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.181 0.819 34 H 0.184 0.816 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.148 -6.599 -19.788 20.970 hybrid contribution 0.594 -0.364 -0.026 0.698 sum -1.553 -6.963 -19.815 21.060 Atomic orbital electron populations 1.22187 0.93932 1.02513 1.03029 1.19635 0.94344 0.97018 0.81144 0.88248 1.46424 1.70245 1.13893 1.09422 1.21316 0.75508 0.87409 0.83720 1.90587 1.48550 1.16445 1.84472 1.19324 0.93761 0.97497 0.92002 0.92896 1.22125 0.98978 0.99790 0.99363 1.20924 1.44256 0.98142 0.91144 0.88858 1.24982 0.95222 0.97065 0.95843 1.69882 1.47234 1.34705 1.01499 0.86917 0.78958 0.86031 0.76655 1.20532 1.22292 1.19224 1.21029 0.98277 0.95105 0.96231 1.22690 0.95871 0.91375 0.96300 1.67766 1.08761 1.39833 0.99544 1.22931 0.98474 0.89636 0.97959 1.18782 1.01604 0.91826 0.84809 1.91535 1.87537 1.80789 1.50990 1.21573 0.97482 1.01939 0.91658 0.92233 0.90698 0.91921 0.77083 0.92361 0.93219 0.94883 0.92538 0.81920 0.81565 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.47 37.16 0.35 -1.46 16 2 C 0.18 2.32 2.79 -69.08 -0.19 2.13 16 3 H 0.10 1.40 7.47 -51.93 -0.39 1.01 16 4 N -0.74 -11.03 4.92 -54.93 -0.27 -11.30 16 5 C 0.53 10.91 7.11 -10.98 -0.08 10.83 16 6 O -0.53 -12.81 15.12 5.56 0.08 -12.73 16 7 C 0.00 -0.10 2.23 -92.92 -0.21 -0.30 16 8 H 0.05 1.15 7.20 -51.92 -0.37 0.78 16 9 C -0.15 -2.89 8.57 37.16 0.32 -2.58 16 10 C -0.51 -14.32 8.95 -34.44 -0.31 -14.63 16 11 H 0.09 3.01 7.00 -52.49 -0.37 2.64 16 12 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 13 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 14 Si 0.88 20.98 24.37 -169.99 -4.14 16.84 16 15 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 16 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.27 -5.85 6.53 56.52 0.37 -5.48 16 18 C -0.10 -1.10 4.96 -104.49 -0.52 -1.62 16 19 C 0.10 0.98 10.23 -17.55 -0.18 0.80 16 20 N -0.45 -4.92 10.36 -13.20 -0.14 -5.05 16 21 C 0.07 0.65 11.17 -17.47 -0.20 0.46 16 22 C 0.05 0.50 7.35 -39.28 -0.29 0.22 16 23 F -0.13 -1.30 17.28 2.25 0.04 -1.26 16 24 C -0.10 -0.99 9.81 -39.21 -0.38 -1.37 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.39 4.86 6.31 -40.82 -0.26 4.61 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.04 3.27 -51.92 -0.17 0.87 16 31 H 0.03 0.52 7.56 -51.93 -0.39 0.12 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.16 1.42 6.92 -52.48 -0.36 1.06 16 34 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 297.35 15.07 4.48 4.48 Total: -1.00 -32.85 297.35 -4.98 -37.84 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.03 Total: 3.39 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -1.78 Total: -5.62 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.37 Total: -42.94 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.14 Total: 16.84 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.85 -4.98 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597482479.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.797 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds