Wall clock time and date at job start Mon Mar 30 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47211 * 119.99441 * 2 1 3 5 5 C 1.34773 * 120.00032 * 275.00347 * 4 2 1 6 6 O 1.21278 * 120.00180 * 359.97438 * 5 4 2 7 7 C 1.50708 * 120.00139 * 180.02562 * 5 4 2 8 8 H 1.09008 * 109.46737 * 300.00018 * 7 5 4 9 9 C 1.52997 * 109.46692 * 59.99632 * 7 5 4 10 10 C 1.50693 * 109.47214 * 179.97438 * 7 5 4 11 11 H 1.07996 * 120.00191 * 359.97438 * 10 7 5 12 12 C 1.37880 * 119.99697 * 179.97438 * 10 7 5 13 13 N 1.31517 * 119.99600 * 180.02562 * 12 10 7 14 14 Si 1.86797 * 120.00331 * 0.02562 * 12 10 7 15 15 H 1.48502 * 109.47059 * 89.99447 * 14 12 10 16 16 H 1.48497 * 109.47153 * 210.00059 * 14 12 10 17 17 H 1.48500 * 109.46937 * 329.99667 * 14 12 10 18 18 C 1.50696 * 109.47327 * 239.99781 * 2 1 3 19 19 C 1.38232 * 120.40530 * 279.97488 * 18 2 1 20 20 N 1.31848 * 120.82074 * 179.97438 * 19 18 2 21 21 C 1.31870 * 121.75267 * 0.02703 * 20 19 18 22 22 C 1.38422 * 120.72342 * 359.73647 * 21 20 19 23 23 F 1.35106 * 120.44296 * 180.26410 * 22 21 20 24 24 C 1.38596 * 120.40584 * 99.99836 * 18 2 1 25 25 H 1.09007 * 109.46812 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47310 * 299.99973 * 1 2 3 27 27 H 1.09003 * 109.47157 * 60.00647 * 1 2 3 28 28 H 0.97004 * 119.99920 * 95.00315 * 4 2 1 29 29 H 1.08997 * 109.47362 * 60.01082 * 9 7 5 30 30 H 1.09007 * 109.46652 * 180.02562 * 9 7 5 31 31 H 1.08999 * 109.47842 * 299.99850 * 9 7 5 32 32 H 0.96999 * 119.99426 * 180.02562 * 13 12 10 33 33 H 1.08003 * 119.58907 * 0.02562 * 19 18 2 34 34 H 1.07999 * 119.64144 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.79700 * 359.95088 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8590 1.1588 2.4114 7 6 2.6500 -0.7282 3.5876 8 1 1.9777 -1.5506 3.8326 9 6 4.0527 -1.2781 3.3214 10 6 2.7011 0.2403 4.7409 11 1 2.3999 1.2674 4.5973 12 6 3.1323 -0.1850 5.9796 13 7 3.1764 0.6602 6.9863 14 14 3.6538 -1.9614 6.2279 15 1 5.1069 -2.0938 5.9519 16 1 3.3769 -2.3673 7.6292 17 1 2.8920 -2.8352 5.2998 18 6 2.0324 -0.7104 -1.2304 19 6 2.0709 -2.0915 -1.2741 20 7 2.5084 -2.7215 -2.3465 21 6 2.9248 -2.0682 -3.4136 22 6 2.9111 -0.6844 -3.4457 23 9 3.3340 -0.0209 -4.5440 24 6 2.4619 0.0129 -2.3318 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 2.2491 -1.6317 1.1527 29 1 4.7249 -0.4558 3.0764 30 1 4.4162 -1.7921 4.2112 31 1 4.0162 -1.9786 2.4871 32 1 3.4801 0.3611 7.8576 33 1 1.7377 -2.6616 -0.4194 34 1 3.2759 -2.6188 -4.2738 35 1 2.4426 1.0928 -2.3260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597482479.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:13 Heat of formation + Delta-G solvation = -70.789983 kcal Electronic energy + Delta-G solvation = -19759.492762 eV Core-core repulsion = 16478.144661 eV Total energy + Delta-G solvation = -3281.348101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.03965 -41.58577 -40.46843 -36.96327 -35.77138 -33.87352 -33.13891 -31.91747 -30.41374 -27.09434 -25.93880 -24.91908 -24.60516 -22.23941 -21.12923 -18.85211 -18.75525 -18.36409 -17.87261 -17.52179 -16.91414 -16.86467 -16.22900 -15.97913 -15.23164 -15.02384 -14.89024 -14.69593 -14.43740 -14.19409 -14.04305 -13.83099 -13.49708 -13.40616 -12.91381 -12.77043 -12.52387 -12.43787 -12.11210 -11.45217 -11.20162 -10.93277 -10.76016 -10.69963 -10.47558 -10.12514 -9.95207 -8.25046 -6.32752 -0.21403 -0.04521 1.35737 1.41845 1.53080 1.86479 2.22447 2.36473 2.54221 2.90879 3.09026 3.27158 3.51201 3.70112 3.77658 4.03478 4.10494 4.20131 4.27268 4.44632 4.60329 4.61841 4.72210 4.77052 4.78344 4.85907 4.98277 5.08247 5.24206 5.46251 5.49818 5.54961 5.55401 6.27260 6.65490 6.70913 6.85677 7.28555 7.49053 8.92608 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031691 B = 0.004435 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.324429 B = 6311.699260 C = 6667.218048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.187 3.813 3 H 0.081 0.919 4 N -0.719 5.719 5 C 0.533 3.467 6 O -0.578 6.578 7 C -0.010 4.010 8 H 0.073 0.927 9 C -0.140 4.140 10 C -0.520 4.520 11 H 0.030 0.970 12 C 0.006 3.994 13 N -0.954 5.954 14 Si 0.958 3.042 15 H -0.263 1.263 16 H -0.302 1.302 17 H -0.227 1.227 18 C -0.108 4.108 19 C 0.097 3.903 20 N -0.467 5.467 21 C 0.075 3.925 22 C 0.046 3.954 23 F -0.132 7.132 24 C -0.100 4.100 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.411 0.589 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.266 0.734 33 H 0.180 0.820 34 H 0.192 0.808 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 -10.100 -22.314 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.082 3.918 3 H 0.099 0.901 4 N -0.375 5.375 5 C 0.322 3.678 6 O -0.456 6.456 7 C -0.031 4.031 8 H 0.091 0.909 9 C -0.198 4.198 10 C -0.558 4.558 11 H 0.049 0.951 12 C -0.191 4.191 13 N -0.594 5.594 14 Si 0.783 3.217 15 H -0.189 1.189 16 H -0.230 1.230 17 H -0.150 1.150 18 C -0.111 4.111 19 C -0.060 4.060 20 N -0.174 5.174 21 C -0.084 4.084 22 C 0.024 3.976 23 F -0.110 7.110 24 C -0.127 4.127 25 H 0.096 0.904 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.249 0.751 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.197 0.803 34 H 0.209 0.791 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.710 -10.119 -22.163 24.424 hybrid contribution 0.415 0.830 0.587 1.098 sum -1.295 -9.289 -21.576 23.526 Atomic orbital electron populations 1.22137 0.92937 1.03542 1.02574 1.19645 0.95098 0.96153 0.80900 0.90129 1.46067 1.68489 1.14436 1.08463 1.20986 0.75305 0.86682 0.84865 1.90580 1.50991 1.18628 1.85403 1.19283 0.96225 0.96673 0.90942 0.90923 1.22028 0.96246 1.00333 1.01162 1.21104 1.43871 0.96873 0.93943 0.95137 1.26032 0.95038 1.02959 0.95035 1.70083 1.49133 1.37856 1.02319 0.85724 0.79652 0.79352 0.76934 1.18907 1.22966 1.14988 1.20715 0.99700 0.95253 0.95401 1.22934 0.95197 0.91137 0.96780 1.67852 1.09510 1.40040 0.99983 1.23349 0.97089 0.89648 0.98282 1.18810 1.01960 0.92065 0.84716 1.91535 1.87599 1.80875 1.51041 1.21724 0.96747 1.02626 0.91557 0.90418 0.93671 0.89884 0.75070 0.93667 0.93664 0.89645 0.92481 0.80275 0.79128 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.47 71.98 0.68 -2.62 16 2 C 0.19 4.43 2.79 44.24 0.12 4.55 16 3 H 0.08 2.26 7.47 -2.38 -0.02 2.24 16 4 N -0.72 -19.80 4.92 -446.10 -2.20 -22.00 16 5 C 0.53 21.74 7.11 87.66 0.62 22.37 16 6 O -0.58 -29.38 15.12 -3.02 -0.05 -29.43 16 7 C -0.01 -0.42 2.23 -12.29 -0.03 -0.45 16 8 H 0.07 2.92 7.20 -2.38 -0.02 2.90 16 9 C -0.14 -5.14 8.57 71.98 0.62 -4.53 16 10 C -0.52 -30.43 8.95 25.60 0.23 -30.20 16 11 H 0.03 2.11 7.00 -2.91 -0.02 2.09 16 12 C 0.01 0.33 5.45 84.66 0.46 0.79 16 13 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 14 Si 0.96 42.33 24.37 68.60 1.67 44.01 16 15 H -0.26 -10.95 6.87 99.48 0.68 -10.26 16 16 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 17 H -0.23 -8.51 6.53 99.48 0.65 -7.86 16 18 C -0.11 -2.01 4.96 -19.78 -0.10 -2.11 16 19 C 0.10 1.65 10.23 84.69 0.87 2.52 16 20 N -0.47 -8.50 10.36 -195.66 -2.03 -10.53 16 21 C 0.07 1.17 11.17 84.73 0.95 2.12 16 22 C 0.05 0.78 7.35 22.47 0.17 0.95 16 23 F -0.13 -2.35 17.28 44.97 0.78 -1.57 16 24 C -0.10 -1.75 9.81 22.51 0.22 -1.53 16 25 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.41 8.50 6.31 -92.71 -0.59 7.91 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.71 3.27 -2.38 -0.01 1.70 16 31 H 0.08 2.23 7.56 -2.39 -0.02 2.21 16 32 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.18 2.33 6.92 -2.91 -0.02 2.31 16 34 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -76.51 297.35 3.75 -72.76 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.46 Total: 15.44 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 4.81 Total: -8.15 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -3.92 Total: -93.06 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.05 Total: -29.43 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.78 Total: -1.57 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.67 Total: 44.01 kcal Total: -76.51 3.75 -72.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597482479.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.968 kcal (2) G-P(sol) polarization free energy of solvation -76.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds