Wall clock time and date at job start Mon Mar 30 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 H 1.09007 * 109.46886 * 325.00252 * 15 14 12 17 17 C 1.52996 * 109.47004 * 84.99728 * 15 14 12 18 18 C 1.50699 * 109.47289 * 205.00100 * 15 14 12 19 19 C 1.38234 * 120.40458 * 319.72615 * 18 15 14 20 20 N 1.31847 * 120.82008 * 179.72934 * 19 18 15 21 21 C 1.31872 * 121.74895 * 0.53058 * 20 19 18 22 22 C 1.38418 * 120.72622 * 359.75306 * 21 20 19 23 23 F 1.35106 * 120.44431 * 179.97438 * 22 21 20 24 24 C 1.38591 * 120.40578 * 139.99766 * 18 15 14 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 30 30 H 1.09004 * 109.47054 * 180.02562 * 17 15 14 31 31 H 1.08997 * 109.47722 * 299.99966 * 17 15 14 32 32 H 1.09007 * 109.46870 * 60.00514 * 17 15 14 33 33 H 1.08003 * 119.58887 * 359.97438 * 19 18 15 34 34 H 1.07999 * 119.63680 * 179.73596 * 21 20 19 35 35 H 1.08005 * 120.79886 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 1 3.1939 -1.3335 -3.4614 17 6 1.2502 -2.0945 -3.9942 18 6 2.2456 0.0273 -4.8044 19 6 1.2349 0.9525 -4.9864 20 7 1.2738 1.8068 -5.9899 21 6 2.2636 1.8092 -6.8612 22 6 3.3084 0.9085 -6.7471 23 9 4.3194 0.9156 -7.6434 24 6 3.3036 -0.0028 -5.6992 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7081 1.1610 3.4844 29 1 1.1494 0.5389 -2.5436 30 1 1.6135 -2.6088 -4.8839 31 1 1.2134 -2.7948 -3.1598 32 1 0.2511 -1.7019 -4.1835 33 1 0.4049 0.9785 -4.2958 34 1 2.2589 2.5216 -7.6729 35 1 4.1048 -0.7179 -5.5844 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597482480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:20 Heat of formation + Delta-G solvation = -56.609216 kcal Electronic energy + Delta-G solvation = -19672.838747 eV Core-core repulsion = 16392.105570 eV Total energy + Delta-G solvation = -3280.733177 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.23672 -40.60147 -38.86980 -35.63425 -33.76094 -32.59662 -31.30296 -30.31916 -29.18414 -25.16911 -24.75366 -24.06721 -22.87306 -21.07589 -19.52624 -17.80578 -17.46334 -17.03276 -16.26599 -16.08808 -16.04270 -15.17142 -14.55975 -14.39129 -14.15108 -13.89351 -13.52865 -13.38190 -13.07996 -12.88513 -12.66764 -12.30854 -11.87418 -11.53552 -11.42278 -11.04215 -10.73424 -10.68950 -10.28672 -10.05529 -9.97407 -9.83888 -9.20040 -8.98803 -8.66187 -8.61917 -8.35420 -6.04875 -4.08146 0.61427 0.78980 3.30602 3.31333 3.39080 3.46649 3.60468 3.64367 3.86220 4.13289 4.37527 4.45872 4.47507 4.60331 4.96108 5.11730 5.27677 5.31330 5.49299 5.52722 5.64615 5.77704 5.91791 6.20817 6.28721 6.32405 6.59007 6.79542 6.88187 6.96266 7.44445 7.52587 7.73238 7.95046 8.09920 8.37930 9.01150 9.15565 9.57676 11.02712 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.034993 B = 0.004031 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.977604 B = 6945.259775 C = 7120.700495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.053 0.947 4 C -0.501 4.501 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.523 3.477 13 O -0.543 6.543 14 N -0.743 5.743 15 C 0.184 3.816 16 H 0.097 0.903 17 C -0.157 4.157 18 C -0.103 4.103 19 C 0.096 3.904 20 N -0.452 5.452 21 C 0.068 3.932 22 C 0.050 3.950 23 F -0.131 7.131 24 C -0.101 4.101 25 H 0.032 0.968 26 H 0.012 0.988 27 H 0.093 0.907 28 H 0.260 0.740 29 H 0.395 0.605 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 0.864 -17.650 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.313 3.687 13 O -0.418 6.418 14 N -0.398 5.398 15 C 0.078 3.922 16 H 0.115 0.885 17 C -0.216 4.216 18 C -0.106 4.106 19 C -0.061 4.061 20 N -0.159 5.159 21 C -0.090 4.090 22 C 0.029 3.971 23 F -0.109 7.109 24 C -0.127 4.127 25 H 0.051 0.949 26 H 0.031 0.969 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.230 0.770 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.182 0.818 34 H 0.184 0.816 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.108 0.849 -17.526 17.547 hybrid contribution 0.918 -0.576 0.638 1.257 sum 1.026 0.273 -16.888 16.921 Atomic orbital electron populations 1.21745 0.96435 0.99861 1.00982 1.18895 0.94226 0.96875 0.89233 0.92955 1.21176 1.30965 1.12814 0.88946 0.90712 1.24948 0.95110 0.95058 0.99133 1.69875 1.37091 1.23118 1.23466 0.86409 0.78625 0.79788 0.82504 1.19567 1.21063 1.21044 1.22026 0.78162 0.84228 0.84252 1.90533 1.37830 1.26796 1.86620 1.46477 1.55656 1.32629 1.05085 1.19621 1.00263 0.90231 0.82134 0.88466 1.22177 0.99174 0.98036 1.02174 1.21047 0.94441 0.97939 0.97165 1.22717 0.97841 0.90573 0.94974 1.67772 1.23694 1.21811 1.02589 1.22927 0.89366 0.97715 0.99034 1.18778 0.88299 0.99555 0.90497 1.91530 1.57874 1.95861 1.65659 1.21561 0.99363 0.98546 0.93276 0.94928 0.96916 0.88814 0.92999 0.76964 0.92079 0.90839 0.92230 0.81825 0.81593 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.87 37.16 0.33 -2.59 16 2 C 0.03 0.69 2.64 -92.92 -0.25 0.45 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -13.91 8.37 -34.44 -0.29 -14.20 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -24.81 11.32 55.43 0.63 -24.19 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.52 11.27 7.11 -10.99 -0.08 11.19 16 13 O -0.54 -13.40 15.12 5.56 0.08 -13.31 16 14 N -0.74 -11.89 4.92 -54.93 -0.27 -12.16 16 15 C 0.18 2.46 2.79 -69.08 -0.19 2.27 16 16 H 0.10 1.44 7.47 -51.93 -0.39 1.05 16 17 C -0.16 -1.92 9.46 37.16 0.35 -1.57 16 18 C -0.10 -1.18 4.96 -104.49 -0.52 -1.70 16 19 C 0.10 1.08 10.22 -17.55 -0.18 0.90 16 20 N -0.45 -5.24 10.36 -13.20 -0.14 -5.38 16 21 C 0.07 0.69 11.17 -17.47 -0.20 0.49 16 22 C 0.05 0.52 7.34 -39.28 -0.29 0.23 16 23 F -0.13 -1.36 17.28 2.25 0.04 -1.33 16 24 C -0.10 -1.06 9.81 -39.21 -0.38 -1.44 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 27 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.40 5.51 6.33 -40.82 -0.26 5.25 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.16 1.61 6.94 -52.48 -0.36 1.25 16 34 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 304.19 15.07 4.58 4.58 Total: -1.00 -30.73 304.19 -6.05 -36.78 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.17 Total: 2.95 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -1.78 Total: -4.47 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.22 Total: -41.73 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.73 -6.05 -36.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597482480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.833 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds