Wall clock time and date at job start Mon Mar 30 2020 05:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 H 1.09007 * 109.46886 * 325.00252 * 15 14 12 17 17 C 1.52996 * 109.47004 * 84.99728 * 15 14 12 18 18 C 1.50699 * 109.47289 * 205.00100 * 15 14 12 19 19 C 1.38234 * 120.40458 * 319.72615 * 18 15 14 20 20 N 1.31847 * 120.82008 * 179.72934 * 19 18 15 21 21 C 1.31872 * 121.74895 * 0.53058 * 20 19 18 22 22 C 1.38418 * 120.72622 * 359.75306 * 21 20 19 23 23 F 1.35106 * 120.44431 * 179.97438 * 22 21 20 24 24 C 1.38591 * 120.40578 * 139.99766 * 18 15 14 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 30 30 H 1.09004 * 109.47054 * 180.02562 * 17 15 14 31 31 H 1.08997 * 109.47722 * 299.99966 * 17 15 14 32 32 H 1.09007 * 109.46870 * 60.00514 * 17 15 14 33 33 H 1.08003 * 119.58887 * 359.97438 * 19 18 15 34 34 H 1.07999 * 119.63680 * 179.73596 * 21 20 19 35 35 H 1.08005 * 120.79886 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 1 3.1939 -1.3335 -3.4614 17 6 1.2502 -2.0945 -3.9942 18 6 2.2456 0.0273 -4.8044 19 6 1.2349 0.9525 -4.9864 20 7 1.2738 1.8068 -5.9899 21 6 2.2636 1.8092 -6.8612 22 6 3.3084 0.9085 -6.7471 23 9 4.3194 0.9156 -7.6434 24 6 3.3036 -0.0028 -5.6992 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7081 1.1610 3.4844 29 1 1.1494 0.5389 -2.5436 30 1 1.6135 -2.6088 -4.8839 31 1 1.2134 -2.7948 -3.1598 32 1 0.2511 -1.7019 -4.1835 33 1 0.4049 0.9785 -4.2958 34 1 2.2589 2.5216 -7.6729 35 1 4.1048 -0.7179 -5.5844 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597482480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:19 Heat of formation + Delta-G solvation = -76.319614 kcal Electronic energy + Delta-G solvation = -19673.693454 eV Core-core repulsion = 16392.105570 eV Total energy + Delta-G solvation = -3281.587884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.04198 -41.56461 -40.38838 -36.92024 -35.73424 -33.73906 -32.69732 -31.69333 -30.33797 -27.18203 -25.80248 -24.92551 -24.44787 -22.27933 -21.08143 -18.86293 -18.45314 -18.18929 -17.83761 -17.56254 -16.88662 -16.66382 -16.27475 -15.90805 -15.17579 -14.90506 -14.78052 -14.53662 -14.41682 -14.18806 -13.93706 -13.51219 -13.28290 -12.97865 -12.90457 -12.64541 -12.58038 -12.44143 -12.16192 -12.00950 -11.00792 -10.93020 -10.70261 -10.59368 -10.31788 -10.09096 -9.93753 -8.13581 -6.23586 -0.21738 -0.04670 1.40313 1.42851 1.55666 1.93749 2.26170 2.47081 2.56602 2.90990 3.16348 3.27253 3.51100 3.69718 3.77479 4.09172 4.10817 4.24180 4.42813 4.60991 4.72481 4.77599 4.79172 4.85053 4.96993 5.00974 5.08400 5.24510 5.49713 5.52894 5.58761 5.77468 5.96805 6.23794 6.68802 6.72715 6.87261 7.41661 7.54148 8.92203 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.034993 B = 0.004031 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.977604 B = 6945.259775 C = 7120.700495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.022 3.978 3 H 0.040 0.960 4 C -0.526 4.526 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.527 3.473 13 O -0.581 6.581 14 N -0.723 5.723 15 C 0.187 3.813 16 H 0.082 0.918 17 C -0.152 4.152 18 C -0.109 4.109 19 C 0.095 3.905 20 N -0.468 5.468 21 C 0.074 3.926 22 C 0.047 3.953 23 F -0.131 7.131 24 C -0.099 4.099 25 H 0.024 0.976 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.264 0.736 29 H 0.408 0.592 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.176 0.824 34 H 0.193 0.807 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.085 1.374 -19.037 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.001 3.999 3 H 0.058 0.942 4 C -0.565 4.565 5 H 0.068 0.932 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.204 1.204 10 H -0.202 1.202 11 H -0.200 1.200 12 C 0.317 3.683 13 O -0.460 6.460 14 N -0.377 5.377 15 C 0.081 3.919 16 H 0.101 0.899 17 C -0.210 4.210 18 C -0.111 4.111 19 C -0.062 4.062 20 N -0.175 5.175 21 C -0.084 4.084 22 C 0.025 3.975 23 F -0.109 7.109 24 C -0.126 4.126 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.245 0.755 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.193 0.807 34 H 0.210 0.790 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.312 1.393 -18.951 19.005 hybrid contribution 1.062 -0.685 0.969 1.592 sum 0.750 0.708 -17.983 18.012 Atomic orbital electron populations 1.21557 0.94872 0.99565 1.01785 1.18831 0.95505 0.95908 0.89663 0.94203 1.21326 1.31418 1.12657 0.91092 0.93243 1.25574 0.95251 0.95743 1.01393 1.69954 1.37275 1.23629 1.24178 0.85573 0.78321 0.78606 0.79563 1.20393 1.20177 1.20011 1.21463 0.77937 0.83620 0.85301 1.90514 1.39674 1.28425 1.87371 1.46156 1.54563 1.32549 1.04420 1.19666 0.99726 0.90965 0.81506 0.89946 1.22124 0.99799 0.97071 1.02028 1.20743 0.95369 0.98159 0.96858 1.22896 0.97975 0.90224 0.95120 1.67843 1.24403 1.22168 1.03090 1.23363 0.88518 0.97560 0.99006 1.18790 0.88490 0.99682 0.90501 1.91535 1.57902 1.95868 1.65626 1.21723 0.99254 0.98644 0.92947 0.95638 0.92736 0.91282 0.92679 0.75486 0.89747 0.93546 0.90770 0.80735 0.79046 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.87 71.98 0.64 -4.60 16 2 C 0.02 1.08 2.64 -12.29 -0.03 1.04 16 3 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.53 -29.95 8.37 25.60 0.21 -29.73 16 5 H 0.05 3.01 6.75 -2.91 -0.02 2.99 16 6 C 0.02 1.08 5.30 84.65 0.45 1.52 16 7 N -0.91 -50.55 11.32 21.44 0.24 -50.30 16 8 Si 0.95 44.50 29.54 68.60 2.03 46.52 16 9 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 C 0.53 22.87 7.11 87.66 0.62 23.49 16 13 O -0.58 -29.39 15.12 -3.02 -0.05 -29.44 16 14 N -0.72 -22.39 4.92 -446.09 -2.20 -24.59 16 15 C 0.19 4.78 2.79 44.24 0.12 4.90 16 16 H 0.08 2.41 7.47 -2.38 -0.02 2.39 16 17 C -0.15 -3.49 9.46 71.98 0.68 -2.81 16 18 C -0.11 -2.26 4.96 -19.78 -0.10 -2.35 16 19 C 0.09 1.90 10.22 84.69 0.87 2.77 16 20 N -0.47 -9.67 10.36 -195.66 -2.03 -11.70 16 21 C 0.07 1.29 11.17 84.73 0.95 2.24 16 22 C 0.05 0.86 7.34 22.47 0.17 1.02 16 23 F -0.13 -2.44 17.28 44.97 0.78 -1.66 16 24 C -0.10 -1.87 9.81 22.51 0.22 -1.65 16 25 H 0.02 1.10 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.86 7.56 -2.39 -0.02 1.85 16 27 H 0.07 3.39 6.07 -2.38 -0.01 3.38 16 28 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 29 H 0.41 10.59 6.33 -92.71 -0.59 10.00 16 30 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.18 2.97 6.94 -2.91 -0.02 2.95 16 34 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -66.53 304.19 4.11 -62.42 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.53 Total: 12.90 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.80 Total: -4.15 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -3.98 Total: -86.59 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.05 Total: -29.44 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.53 4.11 -62.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597482480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.898 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds