Wall clock time and date at job start Mon Mar 30 2020 05:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50701 * 109.47327 * 239.99821 * 2 1 3 5 5 H 1.08000 * 119.99624 * 239.99899 * 4 2 1 6 6 C 1.37872 * 119.99634 * 59.99606 * 4 2 1 7 7 N 1.31515 * 120.00230 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46973 * 90.00366 * 8 6 4 10 10 H 1.48505 * 109.47151 * 210.00011 * 8 6 4 11 11 H 1.48500 * 109.47089 * 330.00544 * 8 6 4 12 12 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 13 13 O 1.21283 * 119.99488 * 120.00024 * 12 2 1 14 14 N 1.34777 * 120.00290 * 300.00464 * 12 2 1 15 15 C 1.46498 * 119.99828 * 180.27728 * 14 12 2 16 16 H 1.09004 * 109.47372 * 34.71852 * 15 14 12 17 17 C 1.52997 * 109.47036 * 274.72131 * 15 14 12 18 18 C 1.50701 * 109.47114 * 154.72036 * 15 14 12 19 19 C 1.38232 * 120.40389 * 40.00216 * 18 15 14 20 20 N 1.31846 * 120.82092 * 179.97438 * 19 18 15 21 21 C 1.31873 * 121.74903 * 0.02562 * 20 19 18 22 22 C 1.38418 * 120.72811 * 359.97137 * 21 20 19 23 23 F 1.35097 * 120.44146 * 180.02562 * 22 21 20 24 24 C 1.38584 * 120.40703 * 219.71736 * 18 15 14 25 25 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 26 26 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 28 28 H 0.97000 * 119.99613 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 30 30 H 1.09003 * 109.47189 * 180.02562 * 17 15 14 31 31 H 1.09009 * 109.47238 * 300.00198 * 17 15 14 32 32 H 1.08997 * 109.47293 * 60.00168 * 17 15 14 33 33 H 1.08001 * 119.58913 * 359.97438 * 19 18 15 34 34 H 1.08001 * 119.63331 * 180.02562 * 21 20 19 35 35 H 1.08004 * 120.80206 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9435 0.8301 -2.6033 8 14 2.3214 -1.1205 -4.0078 9 1 1.3428 -2.1618 -4.4117 10 1 2.4866 -0.1415 -5.1123 11 1 3.6294 -1.7585 -3.7120 12 6 2.0324 -0.7103 1.2306 13 8 2.7297 -1.6964 1.1193 14 7 1.7068 -0.2498 2.4546 15 6 2.2001 -0.9368 3.6508 16 1 3.1988 -1.3291 3.4586 17 6 1.2580 -2.0902 4.0015 18 6 2.2549 0.0348 4.8015 19 6 1.2469 0.9633 4.9816 20 7 1.2863 1.8169 5.9857 21 6 2.2794 1.8224 6.8533 22 6 3.3245 0.9222 6.7377 23 9 4.3388 0.9326 7.6300 24 6 3.3135 0.0044 5.6954 25 1 -0.3632 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 1.1493 0.5390 2.5436 30 1 1.6248 -2.6011 4.8918 31 1 0.2593 -1.6979 4.1937 32 1 1.2184 -2.7929 3.1693 33 1 0.4168 0.9900 4.2913 34 1 2.2769 2.5366 7.6634 35 1 4.1125 -0.7134 5.5822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597482481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:23 Heat of formation + Delta-G solvation = -56.550191 kcal Electronic energy + Delta-G solvation = -19672.815712 eV Core-core repulsion = 16392.085094 eV Total energy + Delta-G solvation = -3280.730617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.23874 -40.60188 -38.86894 -35.63462 -33.75964 -32.59711 -31.30151 -30.31871 -29.18574 -25.16768 -24.75370 -24.06649 -22.87223 -21.07623 -19.52784 -17.80672 -17.46287 -17.03192 -16.26397 -16.08889 -16.04186 -15.16957 -14.56143 -14.39222 -14.15047 -13.89663 -13.52761 -13.38205 -13.08198 -12.88414 -12.66582 -12.30489 -11.87704 -11.53005 -11.42147 -11.03747 -10.74336 -10.68310 -10.29683 -10.05473 -9.97245 -9.83813 -9.19931 -8.99936 -8.66194 -8.61910 -8.34982 -6.04675 -4.08029 0.61474 0.78990 3.30580 3.32914 3.38831 3.45101 3.60386 3.64448 3.85974 4.13330 4.37551 4.45879 4.47523 4.60344 4.96125 5.11763 5.27747 5.31373 5.49280 5.52724 5.64598 5.77750 5.91701 6.20767 6.28700 6.32425 6.59021 6.79680 6.88205 6.96209 7.44516 7.52616 7.73295 7.95019 8.09958 8.37980 9.00805 9.15519 9.57701 11.02885 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.034890 B = 0.004032 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.333313 B = 6942.138960 C = 7115.434229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.053 0.947 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.543 6.543 14 N -0.743 5.743 15 C 0.184 3.816 16 H 0.097 0.903 17 C -0.157 4.157 18 C -0.103 4.103 19 C 0.096 3.904 20 N -0.452 5.452 21 C 0.068 3.932 22 C 0.050 3.950 23 F -0.131 7.131 24 C -0.101 4.101 25 H 0.093 0.907 26 H 0.031 0.969 27 H 0.012 0.988 28 H 0.261 0.739 29 H 0.395 0.605 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 0.904 17.629 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.313 3.687 13 O -0.418 6.418 14 N -0.398 5.398 15 C 0.077 3.923 16 H 0.115 0.885 17 C -0.215 4.215 18 C -0.106 4.106 19 C -0.061 4.061 20 N -0.159 5.159 21 C -0.090 4.090 22 C 0.029 3.971 23 F -0.109 7.109 24 C -0.128 4.128 25 H 0.112 0.888 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.230 0.770 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.182 0.818 34 H 0.184 0.816 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.134 0.893 17.505 17.529 hybrid contribution 0.918 -0.595 -0.633 1.264 sum 1.051 0.298 16.872 16.907 Atomic orbital electron populations 1.21747 0.96444 0.99853 1.00980 1.18891 0.94218 0.96868 0.89209 0.92951 1.21132 1.31054 1.12823 0.88964 0.90774 1.24947 0.95119 0.95040 0.99119 1.69869 1.37097 1.23025 1.23563 0.86456 0.79449 0.79249 0.82083 1.20670 1.21301 1.19758 1.22032 0.78157 0.84228 0.84256 1.90534 1.37845 1.26791 1.86623 1.46474 1.55516 1.32766 1.05086 1.19620 1.00227 0.90242 0.82163 0.88461 1.22176 0.99190 0.98044 1.02135 1.21047 0.94462 0.97931 0.97157 1.22715 0.97856 0.90593 0.94943 1.67773 1.23646 1.21835 1.02610 1.22928 0.89297 0.97758 0.99066 1.18776 0.88215 0.99489 0.90643 1.91527 1.57628 1.95866 1.65897 1.21559 0.99344 0.98507 0.93342 0.88813 0.94935 0.96921 0.92944 0.76961 0.92082 0.92237 0.90838 0.81827 0.81593 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.87 37.16 0.33 -2.59 16 2 C 0.03 0.70 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -13.94 8.37 -34.44 -0.29 -14.23 16 5 H 0.07 2.18 6.75 -52.49 -0.35 1.82 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.82 11.32 55.43 0.63 -24.19 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.52 11.27 7.12 -10.98 -0.08 11.19 16 13 O -0.54 -13.40 15.12 5.55 0.08 -13.31 16 14 N -0.74 -11.89 4.92 -54.93 -0.27 -12.16 16 15 C 0.18 2.46 2.79 -69.08 -0.19 2.27 16 16 H 0.10 1.44 7.46 -51.93 -0.39 1.05 16 17 C -0.16 -1.92 9.47 37.16 0.35 -1.57 16 18 C -0.10 -1.18 4.96 -104.50 -0.52 -1.70 16 19 C 0.10 1.08 10.23 -17.55 -0.18 0.90 16 20 N -0.45 -5.24 10.36 -13.20 -0.14 -5.38 16 21 C 0.07 0.69 11.17 -17.47 -0.20 0.49 16 22 C 0.05 0.52 7.35 -39.28 -0.29 0.23 16 23 F -0.13 -1.37 17.28 2.25 0.04 -1.33 16 24 C -0.10 -1.06 9.81 -39.22 -0.38 -1.44 16 25 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.01 0.22 7.56 -51.93 -0.39 -0.18 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.40 5.51 6.31 -40.82 -0.26 5.25 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.16 1.61 6.92 -52.49 -0.36 1.25 16 34 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -30.70 304.17 -6.04 -36.75 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.17 Total: 2.97 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.78 Total: -4.47 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.22 Total: -41.74 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.70 -6.04 -36.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597482481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.804 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds