Wall clock time and date at job start Mon Mar 30 2020 05:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50701 * 109.47327 * 239.99821 * 2 1 3 5 5 H 1.08000 * 119.99624 * 239.99899 * 4 2 1 6 6 C 1.37872 * 119.99634 * 59.99606 * 4 2 1 7 7 N 1.31515 * 120.00230 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46973 * 90.00366 * 8 6 4 10 10 H 1.48505 * 109.47151 * 210.00011 * 8 6 4 11 11 H 1.48500 * 109.47089 * 330.00544 * 8 6 4 12 12 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 13 13 O 1.21283 * 119.99488 * 120.00024 * 12 2 1 14 14 N 1.34777 * 120.00290 * 300.00464 * 12 2 1 15 15 C 1.46498 * 119.99828 * 180.27728 * 14 12 2 16 16 H 1.09004 * 109.47372 * 34.71852 * 15 14 12 17 17 C 1.52997 * 109.47036 * 274.72131 * 15 14 12 18 18 C 1.50701 * 109.47114 * 154.72036 * 15 14 12 19 19 C 1.38232 * 120.40389 * 40.00216 * 18 15 14 20 20 N 1.31846 * 120.82092 * 179.97438 * 19 18 15 21 21 C 1.31873 * 121.74903 * 0.02562 * 20 19 18 22 22 C 1.38418 * 120.72811 * 359.97137 * 21 20 19 23 23 F 1.35097 * 120.44146 * 180.02562 * 22 21 20 24 24 C 1.38584 * 120.40703 * 219.71736 * 18 15 14 25 25 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 26 26 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 28 28 H 0.97000 * 119.99613 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 30 30 H 1.09003 * 109.47189 * 180.02562 * 17 15 14 31 31 H 1.09009 * 109.47238 * 300.00198 * 17 15 14 32 32 H 1.08997 * 109.47293 * 60.00168 * 17 15 14 33 33 H 1.08001 * 119.58913 * 359.97438 * 19 18 15 34 34 H 1.08001 * 119.63331 * 180.02562 * 21 20 19 35 35 H 1.08004 * 120.80206 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9435 0.8301 -2.6033 8 14 2.3214 -1.1205 -4.0078 9 1 1.3428 -2.1618 -4.4117 10 1 2.4866 -0.1415 -5.1123 11 1 3.6294 -1.7585 -3.7120 12 6 2.0324 -0.7103 1.2306 13 8 2.7297 -1.6964 1.1193 14 7 1.7068 -0.2498 2.4546 15 6 2.2001 -0.9368 3.6508 16 1 3.1988 -1.3291 3.4586 17 6 1.2580 -2.0902 4.0015 18 6 2.2549 0.0348 4.8015 19 6 1.2469 0.9633 4.9816 20 7 1.2863 1.8169 5.9857 21 6 2.2794 1.8224 6.8533 22 6 3.3245 0.9222 6.7377 23 9 4.3388 0.9326 7.6300 24 6 3.3135 0.0044 5.6954 25 1 -0.3632 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 1.1493 0.5390 2.5436 30 1 1.6248 -2.6011 4.8918 31 1 0.2593 -1.6979 4.1937 32 1 1.2184 -2.7929 3.1693 33 1 0.4168 0.9900 4.2913 34 1 2.2769 2.5366 7.6634 35 1 4.1125 -0.7134 5.5822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597482481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:22 Heat of formation + Delta-G solvation = -76.227034 kcal Electronic energy + Delta-G solvation = -19673.668964 eV Core-core repulsion = 16392.085094 eV Total energy + Delta-G solvation = -3281.583869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.04449 -41.56535 -40.38730 -36.92065 -35.73279 -33.73957 -32.69641 -31.69243 -30.33987 -27.18048 -25.80235 -24.92552 -24.44721 -22.27977 -21.08273 -18.86382 -18.45243 -18.18732 -17.83689 -17.56196 -16.88756 -16.66202 -16.27759 -15.90764 -15.17667 -14.90664 -14.78273 -14.53517 -14.41581 -14.18798 -13.93231 -13.50851 -13.28164 -12.98064 -12.90202 -12.65207 -12.57863 -12.44059 -12.16835 -11.99992 -11.01861 -10.92933 -10.70277 -10.59068 -10.31658 -10.09240 -9.93757 -8.13401 -6.23477 -0.21741 -0.04702 1.41778 1.42853 1.54173 1.93714 2.26073 2.47074 2.56552 2.90916 3.16517 3.27226 3.51102 3.69731 3.77453 4.09142 4.10836 4.24213 4.42776 4.60956 4.72493 4.77601 4.79158 4.85070 4.97004 5.00909 5.08391 5.24497 5.49697 5.52900 5.58735 5.77399 5.96815 6.23837 6.68759 6.72604 6.87105 7.41639 7.54106 8.92203 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.034890 B = 0.004032 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.333313 B = 6942.138960 C = 7115.434229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.022 3.978 3 H 0.040 0.960 4 C -0.527 4.527 5 H 0.049 0.951 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.527 3.473 13 O -0.581 6.581 14 N -0.722 5.722 15 C 0.187 3.813 16 H 0.083 0.917 17 C -0.152 4.152 18 C -0.109 4.109 19 C 0.095 3.905 20 N -0.468 5.468 21 C 0.074 3.926 22 C 0.047 3.953 23 F -0.131 7.131 24 C -0.099 4.099 25 H 0.068 0.932 26 H 0.024 0.976 27 H 0.054 0.946 28 H 0.264 0.736 29 H 0.408 0.592 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.176 0.824 34 H 0.193 0.807 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 1.385 19.027 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.001 3.999 3 H 0.058 0.942 4 C -0.566 4.566 5 H 0.068 0.932 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.317 3.683 13 O -0.460 6.460 14 N -0.377 5.377 15 C 0.081 3.919 16 H 0.101 0.899 17 C -0.210 4.210 18 C -0.111 4.111 19 C -0.062 4.062 20 N -0.175 5.175 21 C -0.085 4.085 22 C 0.025 3.975 23 F -0.109 7.109 24 C -0.126 4.126 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.245 0.755 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.193 0.807 34 H 0.210 0.790 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.282 1.405 18.942 18.997 hybrid contribution 1.061 -0.694 -0.966 1.594 sum 0.778 0.711 17.976 18.007 Atomic orbital electron populations 1.21559 0.94885 0.99553 1.01785 1.18828 0.95494 0.95903 0.89648 0.94205 1.21295 1.31501 1.12691 0.91100 0.93233 1.25574 0.95257 0.95725 1.01383 1.69950 1.37293 1.23543 1.24233 0.85627 0.78652 0.78533 0.79259 1.20000 1.20173 1.20371 1.21468 0.77933 0.83626 0.85304 1.90515 1.39680 1.28413 1.87374 1.46153 1.54429 1.32680 1.04421 1.19666 0.99685 0.90986 0.81530 0.89942 1.22122 0.99815 0.97068 1.02001 1.20744 0.95391 0.98136 0.96863 1.22893 0.97993 0.90251 0.95092 1.67843 1.24354 1.22194 1.03107 1.23364 0.88453 0.97609 0.99032 1.18789 0.88405 0.99614 0.90650 1.91532 1.57655 1.95872 1.65865 1.21720 0.99230 0.98618 0.93005 0.91278 0.95652 0.92741 0.92673 0.75483 0.89748 0.90785 0.93530 0.80742 0.79046 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.87 71.98 0.64 -4.60 16 2 C 0.02 1.09 2.64 -12.28 -0.03 1.06 16 3 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.53 -29.99 8.37 25.60 0.21 -29.78 16 5 H 0.05 3.01 6.75 -2.91 -0.02 2.99 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -50.57 11.32 21.45 0.24 -50.32 16 8 Si 0.95 44.49 29.54 68.60 2.03 46.52 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 C 0.53 22.86 7.12 87.66 0.62 23.48 16 13 O -0.58 -29.36 15.12 -3.04 -0.05 -29.41 16 14 N -0.72 -22.39 4.92 -446.09 -2.19 -24.58 16 15 C 0.19 4.78 2.79 44.24 0.12 4.90 16 16 H 0.08 2.41 7.46 -2.39 -0.02 2.39 16 17 C -0.15 -3.48 9.47 71.98 0.68 -2.80 16 18 C -0.11 -2.26 4.96 -19.78 -0.10 -2.36 16 19 C 0.09 1.90 10.23 84.69 0.87 2.77 16 20 N -0.47 -9.68 10.36 -195.66 -2.03 -11.71 16 21 C 0.07 1.29 11.17 84.73 0.95 2.24 16 22 C 0.05 0.86 7.35 22.47 0.17 1.03 16 23 F -0.13 -2.44 17.28 44.97 0.78 -1.66 16 24 C -0.10 -1.88 9.81 22.51 0.22 -1.65 16 25 H 0.07 3.39 6.07 -2.39 -0.01 3.38 16 26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 1.86 7.56 -2.39 -0.02 1.84 16 28 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.41 10.59 6.31 -92.71 -0.59 10.00 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.18 2.97 6.92 -2.91 -0.02 2.95 16 34 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -66.44 304.17 4.11 -62.33 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.53 Total: 13.01 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 4.80 Total: -4.17 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -3.98 Total: -86.61 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.05 Total: -29.41 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.44 4.11 -62.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597482481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.898 kcal (2) G-P(sol) polarization free energy of solvation -66.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds