Wall clock time and date at job start Mon Mar 30 2020 05:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46907 * 2 1 4 4 N 1.46491 * 109.47439 * 120.00017 * 2 1 3 5 5 C 1.34768 * 120.00486 * 274.99930 * 4 2 1 6 6 O 1.21287 * 119.99515 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00492 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.46807 * 299.99902 * 7 5 4 9 9 C 1.53003 * 109.46998 * 59.99951 * 7 5 4 10 10 C 1.50695 * 109.47231 * 180.02562 * 7 5 4 11 11 H 1.08000 * 120.00213 * 359.97438 * 10 7 5 12 12 C 1.37884 * 120.00359 * 180.02562 * 10 7 5 13 13 N 1.31511 * 120.00454 * 179.97438 * 12 10 7 14 14 Si 1.86799 * 119.99402 * 359.97438 * 12 10 7 15 15 H 1.48501 * 109.47282 * 90.00590 * 14 12 10 16 16 H 1.48501 * 109.47121 * 210.00140 * 14 12 10 17 17 H 1.48504 * 109.47348 * 329.99919 * 14 12 10 18 18 C 1.50702 * 109.46746 * 240.00379 * 2 1 3 19 19 N 1.31875 * 119.63587 * 284.99408 * 18 2 1 20 20 C 1.31844 * 121.74963 * 180.02562 * 19 18 2 21 21 C 1.38238 * 120.82205 * 359.97438 * 20 19 18 22 22 C 1.38591 * 119.18924 * 0.25778 * 21 20 19 23 23 C 1.38421 * 119.64066 * 104.97714 * 18 2 1 24 24 F 1.35106 * 120.44122 * 0.02562 * 23 18 2 25 25 H 1.09002 * 109.46645 * 299.99267 * 1 2 3 26 26 H 1.08998 * 109.47599 * 59.99748 * 1 2 3 27 27 H 1.08998 * 109.46907 * 179.97438 * 1 2 3 28 28 H 0.97009 * 119.99812 * 95.00530 * 4 2 1 29 29 H 1.08994 * 109.46718 * 300.00042 * 9 7 5 30 30 H 1.08993 * 109.46844 * 60.00545 * 9 7 5 31 31 H 1.09008 * 109.46577 * 180.02562 * 9 7 5 32 32 H 0.96996 * 119.99935 * 180.02562 * 13 12 10 33 33 H 1.08004 * 119.58769 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.40263 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.80092 * 179.72215 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3570 6 8 1.8592 1.1586 2.4114 7 6 2.6502 -0.7286 3.5873 8 1 1.9779 -1.5510 3.8324 9 6 4.0529 -1.2785 3.3211 10 6 2.7002 0.2395 4.7411 11 1 2.3984 1.2665 4.5977 12 6 3.1323 -0.1856 5.9796 13 7 3.1764 0.6594 6.9863 14 14 3.6549 -1.9617 6.2273 15 1 5.1080 -2.0933 5.9508 16 1 3.3790 -2.3681 7.6287 17 1 2.8932 -2.8359 5.2994 18 6 2.0323 -0.7104 -1.2306 19 7 1.9700 -2.0260 -1.2951 20 6 2.3977 -2.6899 -2.3509 21 6 2.9312 -2.0236 -3.4382 22 6 3.0186 -0.6408 -3.4073 23 6 2.5536 0.0253 -2.2808 24 9 2.6148 1.3730 -2.2086 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2492 -1.6318 1.1524 29 1 4.0162 -1.9788 2.4867 30 1 4.7250 -0.4562 3.0761 31 1 4.4165 -1.7926 4.2109 32 1 3.4807 0.3604 7.8574 33 1 2.3296 -3.7677 -2.3667 34 1 3.2799 -2.5742 -4.2994 35 1 3.4350 -0.0942 -4.2405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597588813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:57 Heat of formation + Delta-G solvation = -44.652044 kcal Electronic energy + Delta-G solvation = -20028.033568 eV Core-core repulsion = 16747.818893 eV Total energy + Delta-G solvation = -3280.214675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -49.19508 -40.53599 -38.89177 -35.37124 -33.76817 -32.57309 -31.73624 -30.84010 -29.27648 -25.08915 -24.96730 -23.88638 -23.03280 -21.05571 -19.45698 -17.90154 -17.48392 -17.04973 -16.67851 -16.06496 -15.66865 -15.27577 -14.50160 -14.36986 -14.26198 -13.89045 -13.73106 -13.41400 -13.17804 -12.86363 -12.68789 -12.27797 -12.22596 -11.96057 -11.55532 -11.15058 -10.90828 -10.55398 -10.26916 -10.21105 -9.91122 -9.59169 -9.20108 -9.04927 -8.64799 -8.56999 -8.50014 -6.00718 -4.00551 0.57624 0.74894 3.25277 3.26975 3.35278 3.39881 3.59942 3.64511 3.80027 4.04643 4.36391 4.40148 4.42205 4.56663 5.01544 5.24751 5.28592 5.35501 5.42880 5.50864 5.60457 5.71881 5.88372 6.09233 6.17468 6.22389 6.36261 6.40851 6.49733 6.77879 6.97891 7.21252 7.53739 7.59921 8.20196 8.60480 9.13092 9.20632 9.58580 11.12284 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.029554 B = 0.004956 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.174952 B = 5648.528737 C = 6080.931353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.192 3.808 3 H 0.103 0.897 4 N -0.734 5.734 5 C 0.529 3.471 6 O -0.531 6.531 7 C -0.004 4.004 8 H 0.053 0.947 9 C -0.144 4.144 10 C -0.504 4.504 11 H 0.094 0.906 12 C 0.070 3.930 13 N -0.897 5.897 14 Si 0.884 3.116 15 H -0.279 1.279 16 H -0.296 1.296 17 H -0.267 1.267 18 C 0.103 3.897 19 N -0.449 5.449 20 C 0.093 3.907 21 C -0.148 4.148 22 C -0.108 4.108 23 C 0.059 3.941 24 F -0.123 7.123 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.402 0.598 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.166 0.834 34 H 0.145 0.855 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -8.364 -22.798 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.086 3.914 3 H 0.121 0.879 4 N -0.390 5.390 5 C 0.318 3.682 6 O -0.405 6.405 7 C -0.025 4.025 8 H 0.071 0.929 9 C -0.202 4.202 10 C -0.542 4.542 11 H 0.112 0.888 12 C -0.131 4.131 13 N -0.535 5.535 14 Si 0.714 3.286 15 H -0.206 1.206 16 H -0.223 1.223 17 H -0.192 1.192 18 C -0.036 4.036 19 N -0.157 5.157 20 C -0.065 4.065 21 C -0.168 4.168 22 C -0.135 4.135 23 C 0.037 3.963 24 F -0.102 7.102 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.237 0.763 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.163 0.837 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.334 -7.859 -21.820 23.231 hybrid contribution 0.925 -0.789 -0.659 1.383 sum -0.409 -8.648 -22.479 24.089 Atomic orbital electron populations 1.22126 0.93753 1.02718 1.02737 1.19617 0.94784 0.96256 0.80783 0.87878 1.46240 1.69648 1.14286 1.08793 1.21316 0.75692 0.87406 0.83795 1.90581 1.48902 1.16475 1.84527 1.19307 0.93731 0.97473 0.92013 0.92915 1.22111 0.99000 0.99757 0.99298 1.20949 1.43929 0.98202 0.91123 0.88828 1.24976 0.95296 0.97021 0.95845 1.69881 1.47472 1.34670 1.01473 0.86922 0.78924 0.86190 0.76564 1.20589 1.22340 1.19190 1.21646 0.96370 0.90209 0.95418 1.67481 1.14686 1.07237 1.26292 1.22892 0.94203 1.00896 0.88505 1.22092 1.00343 0.93776 1.00607 1.21672 0.98974 0.95379 0.97426 1.18546 1.02607 0.78406 0.96736 1.91554 1.94132 1.28129 1.96377 0.90649 0.92317 0.91789 0.76315 0.94864 0.92436 0.93293 0.92612 0.81732 0.83711 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.47 37.16 0.35 -1.85 16 2 C 0.19 3.01 2.81 -69.09 -0.19 2.81 16 3 H 0.10 1.80 6.69 -51.93 -0.35 1.45 16 4 N -0.73 -13.02 4.95 -54.94 -0.27 -13.29 16 5 C 0.53 11.95 7.11 -10.99 -0.08 11.88 16 6 O -0.53 -13.89 15.12 5.55 0.08 -13.80 16 7 C 0.00 -0.09 2.23 -92.92 -0.21 -0.29 16 8 H 0.05 1.23 7.20 -51.93 -0.37 0.86 16 9 C -0.14 -3.07 8.57 37.16 0.32 -2.76 16 10 C -0.50 -14.82 8.96 -34.44 -0.31 -15.13 16 11 H 0.09 3.13 7.00 -52.49 -0.37 2.76 16 12 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 13 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 14 Si 0.88 21.69 24.37 -169.99 -4.14 17.54 16 15 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 16 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.27 -6.11 6.53 56.52 0.37 -5.74 16 18 C 0.10 1.36 5.72 -82.51 -0.47 0.89 16 19 N -0.45 -5.35 9.57 -9.42 -0.09 -5.44 16 20 C 0.09 0.78 11.18 -17.55 -0.20 0.59 16 21 C -0.15 -1.03 10.11 -39.45 -0.40 -1.43 16 22 C -0.11 -0.91 10.16 -39.21 -0.40 -1.31 16 23 C 0.06 0.70 7.28 -39.28 -0.29 0.41 16 24 F -0.12 -1.61 16.28 2.25 0.04 -1.57 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.40 6.43 7.46 -40.82 -0.30 6.12 16 29 H 0.03 0.57 7.56 -51.93 -0.39 0.18 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.08 3.27 -51.92 -0.17 0.91 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 35 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 298.04 15.07 4.49 4.49 Total: -1.00 -34.31 298.04 -5.18 -39.49 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.10 Total: 4.11 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.97 Total: -4.23 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.41 Total: -46.03 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.08 Total: -13.80 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.14 Total: 17.54 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.31 -5.18 -39.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597588813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.159 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds