Wall clock time and date at job start Mon Mar 30 2020 05:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46907 * 2 1 4 4 N 1.46491 * 109.47439 * 120.00017 * 2 1 3 5 5 C 1.34768 * 120.00486 * 274.99930 * 4 2 1 6 6 O 1.21287 * 119.99515 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00492 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.46807 * 299.99902 * 7 5 4 9 9 C 1.53003 * 109.46998 * 59.99951 * 7 5 4 10 10 C 1.50695 * 109.47231 * 180.02562 * 7 5 4 11 11 H 1.08000 * 120.00213 * 359.97438 * 10 7 5 12 12 C 1.37884 * 120.00359 * 180.02562 * 10 7 5 13 13 N 1.31511 * 120.00454 * 179.97438 * 12 10 7 14 14 Si 1.86799 * 119.99402 * 359.97438 * 12 10 7 15 15 H 1.48501 * 109.47282 * 90.00590 * 14 12 10 16 16 H 1.48501 * 109.47121 * 210.00140 * 14 12 10 17 17 H 1.48504 * 109.47348 * 329.99919 * 14 12 10 18 18 C 1.50702 * 109.46746 * 240.00379 * 2 1 3 19 19 N 1.31875 * 119.63587 * 284.99408 * 18 2 1 20 20 C 1.31844 * 121.74963 * 180.02562 * 19 18 2 21 21 C 1.38238 * 120.82205 * 359.97438 * 20 19 18 22 22 C 1.38591 * 119.18924 * 0.25778 * 21 20 19 23 23 C 1.38421 * 119.64066 * 104.97714 * 18 2 1 24 24 F 1.35106 * 120.44122 * 0.02562 * 23 18 2 25 25 H 1.09002 * 109.46645 * 299.99267 * 1 2 3 26 26 H 1.08998 * 109.47599 * 59.99748 * 1 2 3 27 27 H 1.08998 * 109.46907 * 179.97438 * 1 2 3 28 28 H 0.97009 * 119.99812 * 95.00530 * 4 2 1 29 29 H 1.08994 * 109.46718 * 300.00042 * 9 7 5 30 30 H 1.08993 * 109.46844 * 60.00545 * 9 7 5 31 31 H 1.09008 * 109.46577 * 180.02562 * 9 7 5 32 32 H 0.96996 * 119.99935 * 180.02562 * 13 12 10 33 33 H 1.08004 * 119.58769 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.40263 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.80092 * 179.72215 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3570 6 8 1.8592 1.1586 2.4114 7 6 2.6502 -0.7286 3.5873 8 1 1.9779 -1.5510 3.8324 9 6 4.0529 -1.2785 3.3211 10 6 2.7002 0.2395 4.7411 11 1 2.3984 1.2665 4.5977 12 6 3.1323 -0.1856 5.9796 13 7 3.1764 0.6594 6.9863 14 14 3.6549 -1.9617 6.2273 15 1 5.1080 -2.0933 5.9508 16 1 3.3790 -2.3681 7.6287 17 1 2.8932 -2.8359 5.2994 18 6 2.0323 -0.7104 -1.2306 19 7 1.9700 -2.0260 -1.2951 20 6 2.3977 -2.6899 -2.3509 21 6 2.9312 -2.0236 -3.4382 22 6 3.0186 -0.6408 -3.4073 23 6 2.5536 0.0253 -2.2808 24 9 2.6148 1.3730 -2.2086 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2492 -1.6318 1.1524 29 1 4.0162 -1.9788 2.4867 30 1 4.7250 -0.4562 3.0761 31 1 4.4165 -1.7926 4.2109 32 1 3.4807 0.3604 7.8574 33 1 2.3296 -3.7677 -2.3667 34 1 3.2799 -2.5742 -4.2994 35 1 3.4350 -0.0942 -4.2405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597588813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:53 Heat of formation + Delta-G solvation = -70.746254 kcal Electronic energy + Delta-G solvation = -20029.165098 eV Core-core repulsion = 16747.818893 eV Total energy + Delta-G solvation = -3281.346205 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 3.52 seconds Orbital eigenvalues (eV) -50.09151 -41.44846 -40.48401 -36.74217 -35.79335 -33.69558 -33.23795 -32.22729 -30.40564 -27.12764 -26.04321 -24.94655 -24.31600 -22.31723 -21.11971 -18.82786 -18.80083 -18.41304 -18.16768 -17.10119 -16.89965 -16.88834 -16.14012 -15.95322 -15.21902 -14.98244 -14.92245 -14.76515 -14.49578 -14.13653 -14.06031 -13.73520 -13.50031 -13.46456 -13.06090 -12.81119 -12.54895 -12.27871 -12.14166 -11.47011 -11.23294 -10.92269 -10.78848 -10.71503 -10.49720 -10.11403 -9.89950 -8.26694 -6.34620 -0.17688 0.06978 1.33388 1.40319 1.51580 1.82245 2.22762 2.34956 2.62877 2.87565 3.06568 3.15837 3.56676 3.72813 3.97737 4.03553 4.16994 4.22299 4.40672 4.42249 4.57664 4.59208 4.69980 4.72199 4.83784 4.90636 4.98650 5.02678 5.12981 5.41493 5.50285 5.51556 5.60880 6.26610 6.66171 6.78489 6.83994 7.26228 7.46161 8.91058 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.029554 B = 0.004956 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.174952 B = 5648.528737 C = 6080.931353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.189 3.811 3 H 0.075 0.925 4 N -0.711 5.711 5 C 0.528 3.472 6 O -0.581 6.581 7 C -0.007 4.007 8 H 0.070 0.930 9 C -0.138 4.138 10 C -0.521 4.521 11 H 0.030 0.970 12 C 0.007 3.993 13 N -0.952 5.952 14 Si 0.959 3.041 15 H -0.260 1.260 16 H -0.298 1.298 17 H -0.231 1.231 18 C 0.081 3.919 19 N -0.470 5.470 20 C 0.092 3.908 21 C -0.125 4.125 22 C -0.103 4.103 23 C 0.035 3.965 24 F -0.141 7.141 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.414 0.586 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.268 0.732 33 H 0.200 0.800 34 H 0.190 0.810 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 -12.764 -25.974 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.083 3.917 3 H 0.093 0.907 4 N -0.365 5.365 5 C 0.317 3.683 6 O -0.460 6.460 7 C -0.029 4.029 8 H 0.088 0.912 9 C -0.195 4.195 10 C -0.559 4.559 11 H 0.048 0.952 12 C -0.189 4.189 13 N -0.592 5.592 14 Si 0.784 3.216 15 H -0.186 1.186 16 H -0.225 1.225 17 H -0.154 1.154 18 C -0.057 4.057 19 N -0.179 5.179 20 C -0.066 4.066 21 C -0.144 4.144 22 C -0.129 4.129 23 C 0.013 3.987 24 F -0.120 7.120 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.252 0.748 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.217 0.783 34 H 0.208 0.792 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.291 -12.287 -25.058 27.910 hybrid contribution 0.568 0.612 0.185 0.856 sum 0.277 -11.675 -24.872 27.477 Atomic orbital electron populations 1.22030 0.92941 1.03225 1.02293 1.19596 0.95519 0.95269 0.81309 0.90691 1.45928 1.67958 1.14548 1.08085 1.21125 0.75496 0.86749 0.84931 1.90568 1.51331 1.18631 1.85432 1.19257 0.96201 0.96617 0.90783 0.91231 1.22003 0.96188 1.00239 1.01086 1.21076 1.44105 0.96818 0.93928 0.95178 1.26028 0.94924 1.03088 0.94904 1.70074 1.48983 1.37851 1.02314 0.85708 0.79732 0.79166 0.76999 1.18593 1.22532 1.15447 1.21079 0.98913 0.91067 0.94684 1.67412 1.15762 1.06398 1.28294 1.23581 0.92821 1.02426 0.87789 1.22602 0.97631 0.93021 1.01159 1.22069 0.97798 0.96334 0.96719 1.18847 1.04014 0.77846 0.98012 1.91508 1.94438 1.29458 1.96570 0.93466 0.90373 0.90639 0.74845 0.90127 0.93632 0.93312 0.92357 0.78315 0.79244 0.80732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 9.47 71.98 0.68 -3.57 16 2 C 0.19 6.03 2.81 44.25 0.12 6.16 16 3 H 0.08 2.81 6.69 -2.39 -0.02 2.79 16 4 N -0.71 -25.04 4.95 -446.11 -2.21 -27.25 16 5 C 0.53 24.58 7.11 87.66 0.62 25.20 16 6 O -0.58 -32.63 15.12 -3.05 -0.05 -32.68 16 7 C -0.01 -0.33 2.23 -12.29 -0.03 -0.36 16 8 H 0.07 3.11 7.20 -2.38 -0.02 3.10 16 9 C -0.14 -5.54 8.57 71.98 0.62 -4.93 16 10 C -0.52 -32.08 8.96 25.60 0.23 -31.85 16 11 H 0.03 2.18 7.00 -2.91 -0.02 2.16 16 12 C 0.01 0.42 5.45 84.66 0.46 0.88 16 13 N -0.95 -62.20 13.96 21.45 0.30 -61.90 16 14 Si 0.96 43.99 24.37 68.60 1.67 45.66 16 15 H -0.26 -11.14 6.87 99.48 0.68 -10.46 16 16 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 17 H -0.23 -9.25 6.53 99.48 0.65 -8.60 16 18 C 0.08 2.03 5.72 42.60 0.24 2.27 16 19 N -0.47 -9.81 9.57 -183.71 -1.76 -11.57 16 20 C 0.09 1.11 11.18 84.69 0.95 2.06 16 21 C -0.12 -1.05 10.11 22.35 0.23 -0.82 16 22 C -0.10 -1.37 10.16 22.51 0.23 -1.14 16 23 C 0.03 0.78 7.28 22.47 0.16 0.94 16 24 F -0.14 -3.75 16.28 44.97 0.73 -3.02 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.41 12.38 7.46 -92.70 -0.69 11.69 16 29 H 0.08 2.47 7.56 -2.39 -0.02 2.45 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.97 3.27 -2.38 -0.01 1.96 16 32 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 33 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.19 -0.05 8.06 -2.91 -0.02 -0.07 16 35 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -82.46 298.04 3.56 -78.91 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.35 Total: 17.01 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 4.52 Total: -5.16 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.67 Total: -100.72 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.05 Total: -32.68 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.73 Total: -3.02 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.66 kcal Total: -82.46 3.56 -78.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597588813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.159 kcal (2) G-P(sol) polarization free energy of solvation -82.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds