Wall clock time and date at job start Mon Mar 30 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.50697 * 109.47466 * 240.00036 * 2 1 3 5 5 H 1.07998 * 120.00039 * 240.00419 * 4 2 1 6 6 C 1.37880 * 119.99815 * 59.99821 * 4 2 1 7 7 N 1.31508 * 119.99915 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46998 * 89.99974 * 8 6 4 10 10 H 1.48499 * 109.47094 * 209.99977 * 8 6 4 11 11 H 1.48498 * 109.47121 * 330.00074 * 8 6 4 12 12 C 1.50706 * 109.47238 * 119.99686 * 2 1 3 13 13 O 1.21282 * 119.99865 * 119.99797 * 12 2 1 14 14 N 1.34774 * 120.00164 * 300.00292 * 12 2 1 15 15 C 1.46496 * 120.00140 * 179.97438 * 14 12 2 16 16 H 1.08998 * 109.47050 * 35.00843 * 15 14 12 17 17 C 1.52998 * 109.47415 * 275.00099 * 15 14 12 18 18 C 1.50700 * 109.46988 * 155.00074 * 15 14 12 19 19 N 1.31867 * 119.63833 * 44.73115 * 18 15 14 20 20 C 1.31851 * 121.75227 * 179.75487 * 19 18 15 21 21 C 1.38231 * 120.81850 * 0.52064 * 20 19 18 22 22 C 1.38593 * 119.19115 * 359.74544 * 21 20 19 23 23 C 1.38428 * 119.63500 * 225.00230 * 18 15 14 24 24 F 1.35095 * 120.44497 * 359.97438 * 23 18 15 25 25 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 28 28 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99795 * 0.02562 * 14 12 2 30 30 H 1.08997 * 109.47162 * 300.00125 * 17 15 14 31 31 H 1.09000 * 109.46632 * 60.00230 * 17 15 14 32 32 H 1.09002 * 109.46987 * 179.97438 * 17 15 14 33 33 H 1.08001 * 119.59221 * 180.26879 * 20 19 18 34 34 H 1.08004 * 120.40432 * 179.72799 * 21 20 19 35 35 H 1.07997 * 120.80055 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4867 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7068 -0.2499 2.4546 15 6 2.1946 -0.9408 3.6508 16 1 3.1938 -1.3331 3.4616 17 6 1.2502 -2.0944 3.9944 18 6 2.2455 0.0275 4.8044 19 7 1.2318 0.8441 5.0155 20 6 1.2303 1.7043 6.0148 21 6 2.3063 1.7884 6.8785 22 6 3.3937 0.9507 6.6873 23 6 3.3582 0.0537 5.6275 24 9 4.3955 -0.7820 5.4030 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7096 1.1618 -3.4843 29 1 1.1487 0.5385 2.5436 30 1 0.2511 -1.7019 4.1836 31 1 1.2135 -2.7947 3.1600 32 1 1.6135 -2.6086 4.8842 33 1 0.3795 2.3540 6.1580 34 1 2.2998 2.4985 7.6923 35 1 4.2479 0.9941 7.3466 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597588814.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:05 Heat of formation + Delta-G solvation = -54.415137 kcal Electronic energy + Delta-G solvation = -19940.410633 eV Core-core repulsion = 16659.772599 eV Total energy + Delta-G solvation = -3280.638035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -49.14799 -40.46241 -38.72202 -35.25740 -33.65869 -32.50184 -31.54263 -30.29008 -29.05131 -25.08641 -24.84414 -23.78754 -22.77710 -21.02270 -19.34208 -17.85245 -17.41655 -17.02162 -16.12433 -16.01086 -15.68020 -14.98977 -14.47568 -14.22673 -14.19307 -13.84779 -13.54079 -13.35520 -12.91771 -12.74485 -12.55767 -12.20810 -11.87332 -11.40731 -11.07695 -10.96631 -10.65555 -10.60434 -10.20339 -10.15616 -9.92833 -9.82167 -9.13381 -8.90743 -8.54262 -8.41877 -8.25891 -5.97473 -4.00321 0.64003 0.81124 3.32535 3.37748 3.43123 3.50392 3.70453 3.76405 3.93125 4.12206 4.41912 4.46527 4.54492 4.62683 5.07898 5.31457 5.35413 5.42600 5.49567 5.56700 5.66349 5.82280 6.04732 6.28453 6.36148 6.46326 6.71530 6.92041 7.00526 7.12527 7.55041 7.61521 7.82920 8.05777 8.22854 8.53406 9.08748 9.30436 9.64920 11.10165 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.032345 B = 0.004512 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.463157 B = 6203.753285 C = 6523.196351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.546 6.546 14 N -0.733 5.733 15 C 0.191 3.809 16 H 0.101 0.899 17 C -0.153 4.153 18 C 0.104 3.896 19 N -0.447 5.447 20 C 0.093 3.907 21 C -0.149 4.149 22 C -0.108 4.108 23 C 0.058 3.942 24 F -0.124 7.124 25 H 0.092 0.908 26 H 0.031 0.969 27 H 0.013 0.987 28 H 0.260 0.740 29 H 0.403 0.597 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.166 0.834 34 H 0.145 0.855 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 3.196 20.259 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.311 3.689 13 O -0.422 6.422 14 N -0.388 5.388 15 C 0.084 3.916 16 H 0.119 0.881 17 C -0.212 4.212 18 C -0.035 4.035 19 N -0.156 5.156 20 C -0.064 4.064 21 C -0.169 4.169 22 C -0.135 4.135 23 C 0.035 3.965 24 F -0.103 7.103 25 H 0.111 0.889 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.238 0.762 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.183 0.817 34 H 0.163 0.837 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.118 2.516 19.434 19.597 hybrid contribution 0.939 -0.012 -0.051 0.941 sum 1.057 2.505 19.384 19.573 Atomic orbital electron populations 1.21732 0.96440 0.99822 1.00971 1.18866 0.94238 0.96779 0.89184 0.93086 1.21156 1.30855 1.12743 0.88987 0.90765 1.24950 0.95183 0.95075 0.99078 1.69878 1.37254 1.23096 1.23436 0.86458 0.79449 0.79231 0.82103 1.20699 1.21352 1.19763 1.22034 0.78263 0.84303 0.84339 1.90525 1.38084 1.26916 1.86698 1.46297 1.55283 1.32843 1.04409 1.19604 1.00401 0.89727 0.81830 0.88086 1.22114 0.99503 0.97692 1.01913 1.21672 0.88941 0.96331 0.96587 1.67492 1.25522 1.03741 1.18803 1.22904 0.98096 0.95455 0.89979 1.22087 0.93806 0.99770 1.01240 1.21661 1.00364 0.94763 0.96705 1.18553 0.86569 0.93177 0.98152 1.91542 1.55626 1.69069 1.94043 0.88919 0.95009 0.96750 0.93035 0.76190 0.91792 0.90791 0.92476 0.81708 0.83736 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.87 37.16 0.33 -2.79 16 2 C 0.03 0.78 2.64 -92.92 -0.25 0.53 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -14.45 8.37 -34.44 -0.29 -14.74 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.60 11.32 55.43 0.63 -24.97 16 8 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.52 12.30 7.11 -10.98 -0.08 12.22 16 13 O -0.55 -14.51 15.12 5.56 0.08 -14.42 16 14 N -0.73 -13.87 4.95 -54.93 -0.27 -14.14 16 15 C 0.19 3.15 2.81 -69.09 -0.19 2.96 16 16 H 0.10 1.83 6.69 -51.93 -0.35 1.49 16 17 C -0.15 -2.30 9.47 37.16 0.35 -1.95 16 18 C 0.10 1.46 5.72 -82.51 -0.47 0.99 16 19 N -0.45 -5.73 9.56 -9.42 -0.09 -5.82 16 20 C 0.09 0.86 11.18 -17.55 -0.20 0.66 16 21 C -0.15 -1.12 10.11 -39.45 -0.40 -1.52 16 22 C -0.11 -0.98 10.16 -39.21 -0.40 -1.38 16 23 C 0.06 0.72 7.28 -39.27 -0.29 0.43 16 24 F -0.12 -1.68 16.28 2.25 0.04 -1.65 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.01 0.28 7.56 -51.93 -0.39 -0.11 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.40 7.09 7.46 -40.82 -0.30 6.79 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 35 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 304.85 15.07 4.59 4.59 Total: -1.00 -32.35 304.85 -6.24 -38.60 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.23 Total: 3.71 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.97 Total: -3.05 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.27 Total: -44.93 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.35 -6.24 -38.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597588814.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.817 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds