Wall clock time and date at job start Mon Mar 30 2020 04:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47161 * 2 1 4 4 C 1.35738 * 117.00010 * 180.02562 * 3 2 1 5 5 C 1.41853 * 126.78717 * 179.97438 * 4 3 2 6 6 C 1.36664 * 103.81153 * 180.02562 * 5 4 3 7 7 C 1.47537 * 126.88080 * 179.97438 * 6 5 4 8 8 O 1.21583 * 119.99613 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00270 * 179.97438 * 7 6 5 10 10 C 1.47586 * 134.49328 * 179.97438 * 9 7 6 11 11 C 1.53950 * 86.11354 * 155.35990 * 10 9 7 12 12 C 1.50706 * 113.73627 * 137.95493 * 11 10 9 13 13 H 1.07995 * 120.00167 * 1.64697 * 12 11 10 14 14 C 1.37879 * 119.99394 * 181.92396 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47405 * 60.00219 * 16 14 12 18 18 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 20 20 C 1.47813 * 134.45830 * 359.86636 * 9 7 6 21 21 O 1.34662 * 106.23906 * 0.22444 * 6 5 4 22 22 N 1.20876 * 111.63411 * 359.59304 * 21 6 5 23 23 H 1.09001 * 109.47120 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46944 * 299.99745 * 1 2 3 25 25 H 1.08997 * 109.47023 * 59.99488 * 1 2 3 26 26 H 1.09000 * 109.46927 * 239.99704 * 2 1 3 27 27 H 1.09002 * 109.47212 * 120.00079 * 2 1 3 28 28 H 1.08004 * 128.09200 * 0.02562 * 5 4 3 29 29 H 1.09008 * 113.76654 * 41.06222 * 10 9 7 30 30 H 1.08991 * 113.77014 * 269.66271 * 10 9 7 31 31 H 1.09000 * 113.74485 * 269.15566 * 11 10 9 32 32 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 33 33 H 1.09002 * 113.76703 * 90.37825 * 20 9 7 34 34 H 1.08998 * 113.83277 * 318.91803 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3520 1.5251 -0.0005 5 6 4.0453 2.7626 -0.0012 6 6 5.3626 2.3986 -0.0021 7 6 6.5304 3.3003 -0.0036 8 8 6.3680 4.5052 -0.0045 9 7 7.7770 2.7883 -0.0039 10 6 9.1337 3.3693 -0.0057 11 6 9.5879 2.0457 0.6360 12 6 10.8823 1.5133 0.0772 13 1 11.4116 2.0691 -0.6825 14 6 11.3878 0.3138 0.5319 15 7 10.7401 -0.3660 1.4528 16 14 12.9926 -0.3457 -0.1603 17 1 14.0829 0.6267 0.1052 18 1 13.3158 -1.6419 0.4884 19 1 12.8544 -0.5468 -1.6251 20 6 8.3339 1.4191 -0.0006 21 8 5.3812 1.0522 -0.0071 22 7 4.2639 0.5910 -0.0011 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.6294 3.7594 -0.0009 29 1 9.2420 4.2346 0.6485 30 1 9.5391 3.5356 -1.0036 31 1 9.5682 2.0568 1.7258 32 1 11.0956 -1.2100 1.7723 33 1 8.5041 1.0117 -0.9972 34 1 7.8047 0.7300 0.6575 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598026143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:20 Heat of formation + Delta-G solvation = 27.335171 kcal Electronic energy + Delta-G solvation = -19601.841949 eV Core-core repulsion = 16312.376084 eV Total energy + Delta-G solvation = -3289.465865 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.84809 -39.47120 -39.05781 -37.19712 -33.48638 -32.74803 -31.93134 -31.29084 -29.21544 -25.65675 -25.20999 -24.18164 -23.27330 -22.56236 -20.64170 -19.45985 -17.86431 -17.57296 -16.86544 -16.74573 -16.06837 -15.79061 -15.52237 -14.80084 -14.55872 -14.44742 -13.60199 -13.37521 -13.24906 -12.99667 -12.59917 -12.25861 -12.07519 -11.66567 -11.38696 -11.34432 -11.26616 -11.00045 -10.85848 -10.47429 -10.01441 -9.75521 -9.39323 -9.32076 -9.14703 -8.62551 -8.05959 -6.20072 -4.26598 0.93328 2.14500 2.53727 2.79735 3.24952 3.30849 3.31355 3.33087 3.52913 4.12319 4.31945 4.63822 4.65183 4.79486 4.91423 4.99811 5.10846 5.23416 5.37679 5.47738 5.65875 5.73420 5.97912 6.02983 6.17121 6.28368 6.50808 6.56266 6.75453 6.88538 7.49636 7.76755 8.06333 8.09006 8.17063 8.43972 8.76449 9.40660 10.89439 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027958 B = 0.004165 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.269088 B = 6720.795421 C = 7568.625582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.283 6.283 4 C 0.202 3.798 5 C -0.171 4.171 6 C -0.034 4.034 7 C 0.606 3.394 8 O -0.537 6.537 9 N -0.622 5.622 10 C 0.107 3.893 11 C 0.034 3.966 12 C -0.523 4.523 13 H 0.064 0.936 14 C 0.069 3.931 15 N -0.884 5.884 16 Si 0.896 3.104 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.103 3.897 21 O 0.126 5.874 22 N -0.395 5.395 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.187 0.813 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.082 0.918 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.257 0.481 -2.598 14.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.190 6.190 4 C 0.005 3.995 5 C -0.194 4.194 6 C -0.100 4.100 7 C 0.392 3.608 8 O -0.417 6.417 9 N -0.354 5.354 10 C -0.014 4.014 11 C 0.015 3.985 12 C -0.561 4.561 13 H 0.082 0.918 14 C -0.135 4.135 15 N -0.520 5.520 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.019 4.019 21 O 0.060 5.940 22 N -0.119 5.119 23 H 0.100 0.900 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.204 0.796 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.806 -0.127 -2.479 15.013 hybrid contribution 0.443 -0.025 -0.378 0.583 sum -14.364 -0.152 -2.857 14.646 Atomic orbital electron populations 1.21789 0.92262 1.03132 1.03584 1.22821 0.95758 0.80722 1.02563 1.86189 1.13167 1.30121 1.89542 1.21811 0.85699 0.90604 1.01367 1.22086 0.90082 0.99040 1.08198 1.24285 0.96554 0.84174 1.05023 1.16243 0.80381 0.85519 0.78670 1.90813 1.84621 1.12897 1.53333 1.50584 1.03743 1.13463 1.67637 1.23658 0.76533 1.00061 1.01123 1.20521 0.92635 0.88114 0.97209 1.20893 1.06156 1.05937 1.23076 0.91760 1.25020 0.97270 0.96736 0.94464 1.69934 1.38944 1.14862 1.28281 0.86586 0.83540 0.78191 0.79304 1.20061 1.21235 1.20058 1.24009 0.94123 0.82343 1.01403 1.85064 1.22308 1.18788 1.67855 1.74016 0.90587 1.22392 1.24867 0.90005 0.91384 0.91405 0.91552 0.91503 0.79569 0.91379 0.90010 0.91516 0.92483 0.89948 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.59 6.38 37.16 0.24 0.83 16 3 O -0.28 -3.81 10.21 -18.92 -0.19 -4.00 16 4 C 0.20 3.11 8.00 -16.72 -0.13 2.97 16 5 C -0.17 -2.62 10.97 -38.77 -0.43 -3.04 16 6 C -0.03 -0.59 7.22 -36.36 -0.26 -0.85 16 7 C 0.61 11.75 8.05 -12.47 -0.10 11.65 16 8 O -0.54 -11.36 17.64 5.29 0.09 -11.26 16 9 N -0.62 -12.29 3.61 -179.44 -0.65 -12.94 16 10 C 0.11 2.09 8.39 -2.96 -0.02 2.06 16 11 C 0.03 0.77 3.60 -90.84 -0.33 0.45 16 12 C -0.52 -12.83 8.77 -34.44 -0.30 -13.13 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.88 -23.56 13.29 55.43 0.74 -22.82 16 16 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 C 0.10 2.12 7.55 -2.83 -0.02 2.10 16 21 O 0.13 2.22 9.85 15.50 0.15 2.37 16 22 N -0.40 -6.61 11.50 30.47 0.35 -6.26 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.19 2.44 8.06 -52.48 -0.42 2.02 16 29 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 30 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 31 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 32 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 34 H 0.07 1.54 7.60 -51.93 -0.39 1.15 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -27.80 306.58 -5.15 -32.95 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.16 Total: -1.29 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.08 Total: 3.97 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.44 Total: -42.02 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.05 Total: -12.89 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.80 -5.15 -32.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598026143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.284 kcal (2) G-P(sol) polarization free energy of solvation -27.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds