Wall clock time and date at job start Mon Mar 30 2020 04:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47161 * 2 1 4 4 C 1.35738 * 117.00010 * 180.02562 * 3 2 1 5 5 C 1.41853 * 126.78717 * 179.97438 * 4 3 2 6 6 C 1.36664 * 103.81153 * 180.02562 * 5 4 3 7 7 C 1.47537 * 126.88080 * 179.97438 * 6 5 4 8 8 O 1.21583 * 119.99613 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00270 * 179.97438 * 7 6 5 10 10 C 1.47586 * 134.49328 * 179.97438 * 9 7 6 11 11 C 1.53950 * 86.11354 * 155.35990 * 10 9 7 12 12 C 1.50706 * 113.73627 * 137.95493 * 11 10 9 13 13 H 1.07995 * 120.00167 * 1.64697 * 12 11 10 14 14 C 1.37879 * 119.99394 * 181.92396 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47405 * 60.00219 * 16 14 12 18 18 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 20 20 C 1.47813 * 134.45830 * 359.86636 * 9 7 6 21 21 O 1.34662 * 106.23906 * 0.22444 * 6 5 4 22 22 N 1.20876 * 111.63411 * 359.59304 * 21 6 5 23 23 H 1.09001 * 109.47120 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46944 * 299.99745 * 1 2 3 25 25 H 1.08997 * 109.47023 * 59.99488 * 1 2 3 26 26 H 1.09000 * 109.46927 * 239.99704 * 2 1 3 27 27 H 1.09002 * 109.47212 * 120.00079 * 2 1 3 28 28 H 1.08004 * 128.09200 * 0.02562 * 5 4 3 29 29 H 1.09008 * 113.76654 * 41.06222 * 10 9 7 30 30 H 1.08991 * 113.77014 * 269.66271 * 10 9 7 31 31 H 1.09000 * 113.74485 * 269.15566 * 11 10 9 32 32 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 33 33 H 1.09002 * 113.76703 * 90.37825 * 20 9 7 34 34 H 1.08998 * 113.83277 * 318.91803 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3520 1.5251 -0.0005 5 6 4.0453 2.7626 -0.0012 6 6 5.3626 2.3986 -0.0021 7 6 6.5304 3.3003 -0.0036 8 8 6.3680 4.5052 -0.0045 9 7 7.7770 2.7883 -0.0039 10 6 9.1337 3.3693 -0.0057 11 6 9.5879 2.0457 0.6360 12 6 10.8823 1.5133 0.0772 13 1 11.4116 2.0691 -0.6825 14 6 11.3878 0.3138 0.5319 15 7 10.7401 -0.3660 1.4528 16 14 12.9926 -0.3457 -0.1603 17 1 14.0829 0.6267 0.1052 18 1 13.3158 -1.6419 0.4884 19 1 12.8544 -0.5468 -1.6251 20 6 8.3339 1.4191 -0.0006 21 8 5.3812 1.0522 -0.0071 22 7 4.2639 0.5910 -0.0011 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.6294 3.7594 -0.0009 29 1 9.2420 4.2346 0.6485 30 1 9.5391 3.5356 -1.0036 31 1 9.5682 2.0568 1.7258 32 1 11.0956 -1.2100 1.7723 33 1 8.5041 1.0117 -0.9972 34 1 7.8047 0.7300 0.6575 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598026143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:20 Heat of formation + Delta-G solvation = 9.006378 kcal Electronic energy + Delta-G solvation = -19602.636745 eV Core-core repulsion = 16312.376084 eV Total energy + Delta-G solvation = -3290.260661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.12632 -41.07254 -40.11533 -38.83245 -34.69890 -34.57087 -33.24915 -32.17716 -30.87933 -27.37277 -26.90251 -25.31151 -24.51612 -23.77651 -22.02231 -20.98014 -19.18355 -19.08624 -18.55370 -18.02669 -17.37843 -17.03427 -16.87522 -16.54592 -16.13769 -15.62526 -15.08566 -14.80874 -14.24499 -14.10010 -14.02307 -13.54851 -13.30579 -13.15128 -12.98137 -12.77542 -12.62680 -12.36116 -12.22845 -12.15717 -11.66298 -11.14054 -11.06157 -10.95143 -10.53218 -10.50462 -9.68630 -8.12925 -6.24136 -0.42829 0.91104 1.37895 1.44845 1.52168 1.53242 1.60055 1.82457 2.08475 2.49295 2.90429 3.18016 3.42519 3.59084 3.90523 3.90801 4.07821 4.25528 4.27798 4.36019 4.48174 4.56991 4.68585 4.78254 4.82728 4.84847 4.93321 5.05253 5.14179 5.62972 5.82099 5.84996 6.23752 6.55154 6.69438 6.84434 6.94993 7.46034 8.96534 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027958 B = 0.004165 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.269088 B = 6720.795421 C = 7568.625582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 O -0.284 6.284 4 C 0.209 3.791 5 C -0.152 4.152 6 C -0.052 4.052 7 C 0.611 3.389 8 O -0.555 6.555 9 N -0.625 5.625 10 C 0.116 3.884 11 C 0.023 3.977 12 C -0.529 4.529 13 H 0.071 0.929 14 C 0.021 3.979 15 N -0.918 5.918 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.290 1.290 19 H -0.268 1.268 20 C 0.117 3.883 21 O 0.109 5.891 22 N -0.404 5.404 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.210 0.790 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.086 0.914 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.219 0.673 -3.457 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 O -0.192 6.192 4 C 0.011 3.989 5 C -0.174 4.174 6 C -0.118 4.118 7 C 0.398 3.602 8 O -0.436 6.436 9 N -0.356 5.356 10 C -0.004 4.004 11 C 0.003 3.997 12 C -0.568 4.568 13 H 0.089 0.911 14 C -0.179 4.179 15 N -0.555 5.555 16 Si 0.782 3.218 17 H -0.196 1.196 18 H -0.216 1.216 19 H -0.193 1.193 20 C -0.005 4.005 21 O 0.045 5.955 22 N -0.130 5.130 23 H 0.123 0.877 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.227 0.773 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.768 0.083 -3.348 16.120 hybrid contribution 0.622 -0.083 -0.092 0.634 sum -15.146 0.000 -3.439 15.532 Atomic orbital electron populations 1.21820 0.89583 1.04741 1.03914 1.23148 0.97825 0.79316 1.02475 1.86230 1.11789 1.32028 1.89109 1.21935 0.86456 0.90296 1.00208 1.22395 0.89187 1.00027 1.05818 1.23984 0.96530 0.84197 1.07108 1.16325 0.80492 0.85533 0.77838 1.90797 1.84949 1.13678 1.54159 1.50491 1.04205 1.12892 1.68040 1.23577 0.76249 0.98840 1.01758 1.20434 0.92861 0.90532 0.95853 1.21244 1.06852 1.05848 1.22813 0.91118 1.25743 1.00159 0.97193 0.94821 1.70051 1.40491 1.15241 1.29767 0.85632 0.80060 0.77305 0.78783 1.19583 1.21622 1.19342 1.23722 0.93138 0.82586 1.01071 1.85051 1.22841 1.18867 1.68739 1.74001 0.90630 1.22869 1.25547 0.87737 0.91099 0.91001 0.91561 0.91723 0.77302 0.90410 0.88524 0.94190 0.92728 0.89622 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.05 0.90 6.38 71.98 0.46 1.36 16 3 O -0.28 -7.14 10.21 -90.62 -0.92 -8.06 16 4 C 0.21 6.11 8.00 85.78 0.69 6.80 16 5 C -0.15 -4.39 10.97 22.80 0.25 -4.14 16 6 C -0.05 -1.78 7.22 24.36 0.18 -1.60 16 7 C 0.61 23.27 8.05 86.70 0.70 23.96 16 8 O -0.55 -22.87 17.64 -3.98 -0.07 -22.94 16 9 N -0.62 -24.42 3.61 -839.89 -3.03 -27.46 16 10 C 0.12 4.45 8.39 86.49 0.73 5.18 16 11 C 0.02 1.02 3.60 -10.87 -0.04 0.98 16 12 C -0.53 -25.88 8.77 25.60 0.22 -25.65 16 13 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 14 C 0.02 1.08 5.46 84.66 0.46 1.54 16 15 N -0.92 -49.60 13.29 21.45 0.28 -49.31 16 16 Si 0.96 40.14 29.54 68.60 2.03 42.17 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 20 C 0.12 4.86 7.55 86.44 0.65 5.51 16 21 O 0.11 3.82 9.85 65.64 0.65 4.47 16 22 N -0.40 -13.25 11.50 -172.02 -1.98 -15.23 16 23 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.21 4.96 8.06 -2.91 -0.02 4.94 16 29 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 30 H 0.10 3.42 8.09 -2.39 -0.02 3.40 16 31 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 33 H 0.09 3.49 8.09 -2.39 -0.02 3.48 16 34 H 0.06 2.78 7.60 -2.39 -0.02 2.76 16 Total: -1.00 -58.14 306.58 3.10 -55.05 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.11 Total: 8.39 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 5.03 Total: 12.93 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -4.73 Total: -92.00 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.35 Total: -26.53 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -58.14 3.10 -55.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598026143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.055 kcal (2) G-P(sol) polarization free energy of solvation -58.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds