Wall clock time and date at job start Mon Mar 30 2020 04:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35349 * 117.00229 * 180.02562 * 3 2 1 5 5 N 1.30551 * 125.44942 * 179.71692 * 4 3 2 6 6 C 1.36330 * 108.38379 * 179.89914 * 5 4 3 7 7 C 1.47364 * 126.41290 * 180.14109 * 6 5 4 8 8 O 1.21618 * 120.00249 * 180.25626 * 7 6 5 9 9 N 1.34779 * 119.99893 * 0.25615 * 7 6 5 10 10 C 1.47067 * 136.05912 * 359.63628 * 9 7 6 11 11 C 1.53242 * 88.08028 * 207.19885 * 10 9 7 12 12 C 1.50705 * 114.32196 * 220.46626 * 11 10 9 13 13 H 1.08002 * 120.00028 * 93.75860 * 12 11 10 14 14 C 1.37883 * 119.99750 * 273.75597 * 12 11 10 15 15 N 1.31518 * 119.99619 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00199 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47001 * 90.00038 * 16 14 12 18 18 H 1.48494 * 109.47154 * 209.99503 * 16 14 12 19 19 H 1.48497 * 109.47187 * 329.99718 * 16 14 12 20 20 C 1.47077 * 136.05810 * 179.97438 * 9 7 6 21 21 C 1.35916 * 107.17601 * 0.36079 * 6 5 4 22 22 O 1.34202 * 125.44649 * 0.02562 * 4 3 2 23 23 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 28 28 H 1.09002 * 113.46204 * 321.92643 * 10 9 7 29 29 H 1.08991 * 113.47342 * 92.36720 * 10 9 7 30 30 H 1.08994 * 114.19759 * 87.72924 * 11 10 9 31 31 H 0.96996 * 119.99688 * 179.97438 * 15 14 12 32 32 H 1.08993 * 113.46722 * 267.63084 * 20 9 7 33 33 H 1.08998 * 113.46245 * 38.06998 * 20 9 7 34 34 H 1.07993 * 126.45838 * 179.75205 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9595 2.6781 -0.0059 6 6 5.3039 2.4523 -0.0022 7 6 6.3631 3.4769 -0.0031 8 8 7.5325 3.1428 -0.0042 9 7 6.0358 4.7844 -0.0027 10 6 4.7887 5.5638 -0.0080 11 6 5.5579 6.6929 -0.7022 12 6 5.2124 8.0743 -0.2086 13 1 5.8011 8.5314 0.5729 14 6 4.1446 8.7544 -0.7549 15 7 3.8428 9.9597 -0.3238 16 14 3.1259 7.9635 -2.1062 17 1 2.0078 7.1975 -1.4992 18 1 2.5775 9.0191 -2.9950 19 1 3.9825 7.0450 -2.8986 20 6 6.7688 6.0595 -0.0029 21 6 5.4846 1.1052 -0.0026 22 8 4.2630 0.5427 -0.0016 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.0068 5.1274 -0.6294 29 1 4.4372 5.8274 0.9894 30 1 5.5789 6.6166 -1.7893 31 1 3.0919 10.4384 -0.7083 32 1 6.9497 6.4562 0.9960 33 1 7.6672 6.0436 -0.6198 34 1 6.4308 0.5846 -0.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598030159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:32 Heat of formation + Delta-G solvation = -27.015519 kcal Electronic energy + Delta-G solvation = -19782.218951 eV Core-core repulsion = 16490.396264 eV Total energy + Delta-G solvation = -3291.822687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.57212 -41.18139 -40.01066 -38.87643 -36.09424 -34.66539 -32.90966 -31.54212 -30.53408 -27.59723 -26.75660 -25.03991 -24.43442 -23.28534 -21.89218 -20.68612 -19.48342 -19.14953 -18.67577 -18.23044 -17.44475 -16.88244 -16.77746 -16.50959 -16.06362 -15.81988 -15.15176 -14.80388 -14.58701 -14.05395 -13.95012 -13.59416 -13.55810 -13.40664 -12.76407 -12.68697 -12.60417 -12.53650 -11.92459 -11.81508 -11.80440 -11.63164 -11.25361 -11.08237 -10.66456 -9.92900 -9.60651 -8.28267 -6.34726 -0.01446 0.79889 0.88847 1.40287 1.42601 1.50476 1.61859 1.88010 2.15331 2.37294 3.01596 3.14257 3.69563 3.90637 3.91234 3.94739 4.06720 4.23716 4.26960 4.34168 4.42205 4.59039 4.62324 4.76175 4.80502 4.84834 4.87004 4.96177 5.16865 5.37120 5.60930 5.62777 6.28254 6.41871 6.65676 6.72251 6.99974 7.32457 8.87114 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.005753 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.315415 B = 4865.512869 C = 6218.973238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.259 6.259 4 C 0.384 3.616 5 N -0.487 5.487 6 C -0.075 4.075 7 C 0.618 3.382 8 O -0.573 6.573 9 N -0.630 5.630 10 C 0.113 3.887 11 C -0.022 4.022 12 C -0.509 4.509 13 H 0.049 0.951 14 C 0.028 3.972 15 N -0.940 5.940 16 Si 0.930 3.070 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.249 1.249 20 C 0.121 3.879 21 C 0.036 3.964 22 O -0.212 6.212 23 H 0.065 0.935 24 H 0.115 0.885 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.268 0.732 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.201 -24.149 -0.669 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.168 6.168 4 C 0.137 3.863 5 N -0.233 5.233 6 C -0.193 4.193 7 C 0.408 3.592 8 O -0.455 6.455 9 N -0.361 5.361 10 C -0.010 4.010 11 C -0.041 4.041 12 C -0.547 4.547 13 H 0.067 0.933 14 C -0.171 4.171 15 N -0.579 5.579 16 Si 0.755 3.245 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.173 1.173 20 C 0.000 4.000 21 C -0.037 4.037 22 O -0.103 6.103 23 H 0.085 0.915 24 H 0.133 0.867 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -5.234 -23.740 -0.688 24.320 hybrid contribution -0.295 -0.403 -0.291 0.578 sum -5.529 -24.143 -0.979 24.787 Atomic orbital electron populations 1.21869 0.89880 1.05140 1.03742 1.23466 0.97911 0.77665 1.04268 1.86443 1.07835 1.33525 1.89004 1.23330 0.84235 0.81363 0.97356 1.71165 1.04752 1.22976 1.24452 1.21468 0.89715 0.94636 1.13485 1.16462 0.86241 0.80125 0.76373 1.90755 1.18938 1.81022 1.54763 1.49651 1.13449 1.03601 1.69387 1.23447 0.87817 0.88619 1.01147 1.20818 0.93815 0.92780 0.96692 1.20916 1.13980 0.98974 1.20832 0.93297 1.25721 0.98095 0.94716 0.98576 1.70016 1.29787 1.13665 1.44474 0.85960 0.79793 0.78750 0.80037 1.19088 1.20997 1.17251 1.23084 0.97103 0.78659 1.01181 1.25572 0.86727 0.91481 0.99922 1.84415 1.15871 1.38371 1.71612 0.91541 0.86711 0.91486 0.89536 0.89477 0.91475 0.90394 0.91430 0.92247 0.89658 0.90477 0.71068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 71.98 0.74 -0.64 16 2 C 0.04 0.53 6.38 71.98 0.46 0.99 16 3 O -0.26 -6.13 10.19 -64.18 -0.65 -6.78 16 4 C 0.38 10.52 8.98 130.43 1.17 11.69 16 5 N -0.49 -16.84 9.90 -419.40 -4.15 -20.99 16 6 C -0.08 -2.47 6.96 40.31 0.28 -2.19 16 7 C 0.62 23.92 8.06 86.65 0.70 24.62 16 8 O -0.57 -23.43 17.66 -4.09 -0.07 -23.50 16 9 N -0.63 -25.82 3.69 -862.76 -3.19 -29.01 16 10 C 0.11 4.83 6.88 83.10 0.57 5.40 16 11 C -0.02 -0.98 2.99 -11.29 -0.03 -1.02 16 12 C -0.51 -27.68 9.38 25.60 0.24 -27.44 16 13 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 14 C 0.03 1.56 5.47 84.66 0.46 2.03 16 15 N -0.94 -56.65 13.96 21.45 0.30 -56.35 16 16 Si 0.93 43.08 27.42 68.60 1.88 44.96 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.25 -10.86 6.22 99.48 0.62 -10.24 16 20 C 0.12 4.97 8.19 83.18 0.68 5.65 16 21 C 0.04 0.82 11.93 67.28 0.80 1.62 16 22 O -0.21 -4.63 10.20 18.88 0.19 -4.44 16 23 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.07 2.88 7.46 -2.39 -0.02 2.86 16 29 H 0.08 3.42 8.10 -2.39 -0.02 3.40 16 30 H 0.07 3.09 6.50 -2.39 -0.02 3.08 16 31 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.09 3.44 8.10 -2.39 -0.02 3.42 16 33 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.27 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -70.35 302.37 1.41 -68.94 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.03 Total: 6.46 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 6.07 Total: 20.70 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -7.04 Total: -106.35 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.53 Total: -34.72 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.96 kcal Total: -70.35 1.41 -68.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.925 kcal (2) G-P(sol) polarization free energy of solvation -70.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds