Wall clock time and date at job start Mon Mar 30 2020 04:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 O 1.42898 * 109.46876 * 90.00211 * 7 6 5 9 9 C 1.42895 * 114.00080 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47513 * 179.97438 * 9 8 7 11 11 O 1.21294 * 119.99760 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00223 * 180.02562 * 10 9 8 13 13 C 1.37095 * 119.99748 * 179.97438 * 12 10 9 14 14 H 1.07997 * 120.00598 * 0.02562 * 13 12 10 15 15 C 1.38953 * 119.99785 * 179.97438 * 13 12 10 16 16 N 1.31413 * 119.99895 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00105 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47411 * 89.99589 * 17 15 13 19 19 H 1.48504 * 109.47172 * 210.00169 * 17 15 13 20 20 H 1.48505 * 109.46905 * 330.00008 * 17 15 13 21 21 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 22 22 N 1.31967 * 120.83264 * 0.02562 * 21 6 5 23 23 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 25 25 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 26 26 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 27 27 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 29 29 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 30 30 H 1.08998 * 109.47310 * 299.99749 * 9 8 7 31 31 H 1.09004 * 109.47391 * 60.00019 * 9 8 7 32 32 H 0.96993 * 120.00026 * 0.02562 * 12 10 9 33 33 H 0.97005 * 119.99626 * 180.02562 * 16 15 13 34 34 H 1.07994 * 119.58392 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 8 4.0743 5.4532 -1.3457 9 6 4.6668 6.7486 -1.4586 10 6 4.8283 7.1021 -2.9146 11 8 4.4714 6.3212 -3.7714 12 7 5.3701 8.2855 -3.2647 13 6 5.5174 8.6068 -4.5894 14 1 5.1989 7.9119 -5.3523 15 6 6.0755 9.8270 -4.9504 16 7 6.2162 10.1352 -6.2201 17 14 6.6257 11.0293 -3.6309 18 1 8.0446 10.7655 -3.2814 19 1 6.4910 12.4181 -4.1394 20 1 5.7787 10.8602 -2.4229 21 6 1.8772 3.5097 0.0021 22 7 1.3187 2.3141 0.0026 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.0229 0.3694 -0.0035 27 1 5.1255 2.5946 0.0011 28 1 3.2187 5.7201 0.5158 29 1 4.8376 4.9803 0.5150 30 1 4.0254 7.4851 -0.9746 31 1 5.6440 6.7446 -0.9756 32 1 5.6564 8.9095 -2.5796 33 1 6.6061 10.9869 -6.4721 34 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599234926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:52 Heat of formation + Delta-G solvation = -73.404867 kcal Electronic energy + Delta-G solvation = -18891.595522 eV Core-core repulsion = 15597.761241 eV Total energy + Delta-G solvation = -3293.834281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78914 -38.78613 -38.17572 -36.91104 -33.98486 -32.85294 -31.76260 -31.62306 -28.32870 -27.50463 -25.68170 -24.07189 -23.61472 -22.04673 -19.53364 -18.58342 -18.48597 -17.34317 -16.68832 -16.19478 -15.95780 -15.71020 -15.17254 -14.86365 -14.66584 -14.45396 -13.72610 -13.49838 -13.42151 -13.26323 -12.89378 -12.39733 -12.13375 -11.98038 -11.87415 -11.50878 -11.23653 -11.19489 -10.61773 -10.04489 -9.99452 -9.82375 -9.62578 -9.49319 -8.66827 -8.47516 -8.21765 -6.33104 -3.85314 0.95400 1.09946 2.89607 3.00315 3.04792 3.13210 3.40047 3.68075 3.90843 4.08168 4.15566 4.60905 4.72537 4.81687 4.93630 5.05519 5.10256 5.14128 5.17557 5.27812 5.28273 5.42005 5.43876 5.59293 5.70105 5.75739 5.82720 6.13322 6.24641 7.02598 7.20988 7.56473 7.67189 8.10050 8.57097 8.92193 9.38177 9.77930 10.79827 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.047262 B = 0.003084 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.296749 B = 9078.265979 C = 9300.622645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.320 3.680 4 C -0.193 4.193 5 C -0.018 4.018 6 C -0.173 4.173 7 C 0.107 3.893 8 O -0.353 6.353 9 C 0.051 3.949 10 C 0.450 3.550 11 O -0.556 6.556 12 N -0.587 5.587 13 C -0.306 4.306 14 H 0.120 0.880 15 C 0.042 3.958 16 N -0.880 5.880 17 Si 0.881 3.119 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.269 1.269 21 C 0.163 3.837 22 N -0.542 5.542 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.142 0.858 27 H 0.144 0.856 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.371 0.629 33 H 0.274 0.726 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -12.583 18.708 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.141 3.859 4 C -0.214 4.214 5 C -0.044 4.044 6 C -0.175 4.175 7 C 0.030 3.970 8 O -0.271 6.271 9 C -0.029 4.029 10 C 0.236 3.764 11 O -0.437 6.437 12 N -0.228 5.228 13 C -0.434 4.434 14 H 0.138 0.862 15 C -0.161 4.161 16 N -0.519 5.519 17 Si 0.707 3.293 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.195 1.195 21 C 0.007 3.993 22 N -0.266 5.266 23 H 0.113 0.887 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.160 0.840 27 H 0.162 0.838 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.204 0.796 33 H 0.085 0.915 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.936 -13.450 17.787 23.354 hybrid contribution 1.207 1.483 1.086 2.199 sum -5.729 -11.966 18.874 23.070 Atomic orbital electron populations 1.22857 0.77228 1.02843 1.02586 1.86228 1.22964 1.24662 1.87821 1.19890 0.89481 0.84715 0.91783 1.21046 0.91969 0.99522 1.08819 1.21360 1.00743 0.90622 0.91626 1.20434 0.94814 0.95480 1.06782 1.21147 0.99066 0.91460 0.85324 1.88133 1.82222 1.32795 1.23947 1.22211 0.97842 0.85575 0.97284 1.19433 0.84365 0.83572 0.89070 1.90600 1.52231 1.49669 1.51230 1.42085 1.56583 1.15913 1.08202 1.19426 1.38839 1.03424 0.81726 0.86203 1.25038 0.97520 0.97203 0.96362 1.69623 1.43703 1.23585 1.15031 0.86659 0.79552 0.81677 0.81424 1.19561 1.20109 1.19453 1.22328 0.92183 0.93634 0.91116 1.67350 1.40773 0.98737 1.19699 0.88704 0.92329 0.92154 0.83969 0.83828 0.92195 0.92279 0.91532 0.91568 0.79597 0.91537 0.82138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.61 10.48 -18.72 -0.20 -3.81 16 3 C 0.32 4.07 7.49 -17.12 -0.13 3.94 16 4 C -0.19 -2.17 10.04 -39.27 -0.39 -2.57 16 5 C -0.02 -0.20 9.85 -39.31 -0.39 -0.59 16 6 C -0.17 -2.11 5.53 -104.47 -0.58 -2.68 16 7 C 0.11 1.27 6.08 36.01 0.22 1.49 16 8 O -0.35 -6.11 9.86 -55.14 -0.54 -6.65 16 9 C 0.05 0.85 6.42 36.00 0.23 1.08 16 10 C 0.45 10.54 7.86 -10.99 -0.09 10.45 16 11 O -0.56 -15.87 16.08 -14.36 -0.23 -16.10 16 12 N -0.59 -14.01 5.09 -10.96 -0.06 -14.06 16 13 C -0.31 -8.68 10.16 -14.93 -0.15 -8.84 16 14 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 15 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 16 N -0.88 -25.64 13.96 55.50 0.77 -24.86 16 17 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 21 C 0.16 2.01 10.85 -17.56 -0.19 1.82 16 22 N -0.54 -7.15 9.22 -13.33 -0.12 -7.27 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 25 H 0.06 0.56 8.11 -51.93 -0.42 0.13 16 26 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 28 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 29 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -35.62 305.76 -5.00 -40.62 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.01 Total: 6.64 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -0.51 Total: 6.56 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.60 Total: -46.20 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.97 Total: -26.57 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.62 -5.00 -40.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599234926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.785 kcal (2) G-P(sol) polarization free energy of solvation -35.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds