Wall clock time and date at job start Mon Mar 30 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35985 * 116.99650 * 2 1 4 4 C 1.40158 * 125.83394 * 179.71521 * 3 2 1 5 5 C 1.36063 * 107.81765 * 179.86815 * 4 3 2 6 6 N 1.39482 * 126.21905 * 180.10842 * 5 4 3 7 7 C 1.34777 * 119.99805 * 0.31204 * 6 5 4 8 8 O 1.21588 * 120.00112 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00191 * 179.97438 * 7 6 5 10 10 C 1.47071 * 136.05353 * 359.62904 * 9 7 6 11 11 C 1.53754 * 87.88903 * 152.96147 * 10 9 7 12 12 C 1.50698 * 114.26997 * 139.79014 * 11 10 9 13 13 H 1.08005 * 119.99875 * 266.47824 * 12 11 10 14 14 C 1.37879 * 120.00065 * 86.47683 * 12 11 10 15 15 N 1.31511 * 119.99779 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99854 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47297 * 89.99917 * 16 14 12 18 18 H 1.48497 * 109.47295 * 209.99833 * 16 14 12 19 19 H 1.48509 * 109.47325 * 330.00179 * 16 14 12 20 20 C 1.47064 * 136.06141 * 179.97438 * 9 7 6 21 21 N 1.35807 * 107.56569 * 0.38864 * 5 4 3 22 22 H 0.96995 * 126.04457 * 179.76721 * 21 5 4 23 23 N 1.31107 * 125.84182 * 0.02777 * 3 2 1 24 24 H 1.08996 * 109.47452 * 60.00244 * 1 2 3 25 25 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47352 * 299.99791 * 1 2 3 27 27 H 1.07995 * 126.09002 * 359.97438 * 4 3 2 28 28 H 0.96999 * 120.00303 * 180.30839 * 6 5 4 29 29 H 1.08998 * 113.47104 * 267.69416 * 10 9 7 30 30 H 1.09004 * 113.47139 * 38.13213 * 10 9 7 31 31 H 1.09003 * 114.39478 * 272.67869 * 11 10 9 32 32 H 0.96997 * 119.99453 * 179.97438 * 15 14 12 33 33 H 1.08999 * 113.46791 * 321.86772 * 20 9 7 34 34 H 1.09006 * 113.46375 * 92.25117 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4312 1.4270 0.0056 5 6 3.6436 2.7709 0.0006 6 7 4.8838 3.4093 0.0015 7 6 6.0171 2.6800 0.0015 8 8 5.9585 1.4655 0.0012 9 7 7.2155 3.2968 0.0019 10 6 7.6899 4.6888 -0.0043 11 6 8.9648 4.1976 0.7009 12 6 10.2333 4.8467 0.2103 13 1 10.8141 4.3761 -0.5693 14 6 10.6524 6.0412 0.7566 15 7 11.7591 6.6079 0.3280 16 14 9.6483 6.8547 2.1054 17 1 10.1145 6.3710 3.4298 18 1 9.8178 8.3279 2.0287 19 1 8.2140 6.5116 1.9301 20 6 8.6241 2.8741 0.0025 21 7 2.4287 3.3779 0.0008 22 1 2.2687 4.3346 0.0010 23 7 1.4478 2.3782 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 4.1939 0.6624 0.0111 28 1 4.9306 4.3782 0.0020 29 1 7.8712 5.0812 -1.0049 30 1 7.0836 5.3569 0.6075 31 1 8.8923 4.1607 1.7879 32 1 12.0537 7.4484 0.7122 33 1 8.8135 1.9961 0.6201 34 1 9.0515 2.7868 -0.9965 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599852116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:56 Heat of formation + Delta-G solvation = 42.693554 kcal Electronic energy + Delta-G solvation = -19520.395946 eV Core-core repulsion = 16263.888821 eV Total energy + Delta-G solvation = -3256.507124 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.68013 -41.37157 -39.56279 -38.91367 -35.89292 -34.64687 -31.94661 -31.70116 -29.86956 -28.17643 -27.08316 -26.77130 -23.40832 -22.66550 -21.72510 -20.58303 -20.01784 -19.13970 -18.44159 -17.88991 -17.28401 -17.20848 -16.81724 -16.18278 -16.01425 -15.45650 -15.04494 -14.95732 -14.80026 -14.55141 -14.32764 -13.46584 -13.43011 -12.87676 -12.67069 -12.58964 -12.49293 -11.92242 -11.83441 -11.79593 -11.60139 -11.19925 -11.07084 -10.64359 -9.86153 -9.75926 -9.21313 -8.24245 -6.32324 0.60772 0.77012 1.44622 1.48144 1.57067 1.62294 1.70505 2.09990 2.32628 2.41796 2.88904 3.07875 3.63871 3.98398 4.17420 4.31839 4.36770 4.40548 4.42802 4.50937 4.61792 4.67790 4.74389 4.83249 4.84768 4.91723 5.35752 5.40958 5.62654 5.76502 6.13955 6.31722 6.39743 6.59484 6.75603 6.87283 7.27785 7.35697 8.91127 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.046189 B = 0.003756 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.063034 B = 7452.648562 C = 7848.242681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C 0.272 3.728 4 C -0.315 4.315 5 C 0.369 3.631 6 N -0.644 5.644 7 C 0.734 3.266 8 O -0.599 6.599 9 N -0.655 5.655 10 C 0.095 3.905 11 C -0.013 4.013 12 C -0.511 4.511 13 H 0.042 0.958 14 C 0.018 3.982 15 N -0.945 5.945 16 Si 0.942 3.058 17 H -0.278 1.278 18 H -0.292 1.292 19 H -0.224 1.224 20 C 0.139 3.861 21 N -0.463 5.463 22 H 0.458 0.542 23 N -0.343 5.343 24 H 0.059 0.941 25 H 0.127 0.873 26 H 0.059 0.941 27 H 0.157 0.843 28 H 0.427 0.573 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.267 0.733 33 H 0.069 0.931 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.640 -3.420 0.714 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.209 6.209 3 C 0.067 3.933 4 C -0.348 4.348 5 C 0.145 3.855 6 N -0.295 5.295 7 C 0.437 3.563 8 O -0.477 6.477 9 N -0.392 5.392 10 C -0.027 4.027 11 C -0.033 4.033 12 C -0.549 4.549 13 H 0.060 0.940 14 C -0.180 4.180 15 N -0.584 5.584 16 Si 0.765 3.235 17 H -0.204 1.204 18 H -0.218 1.218 19 H -0.146 1.146 20 C 0.016 3.984 21 N -0.185 5.185 22 H 0.307 0.693 23 N -0.185 5.185 24 H 0.078 0.922 25 H 0.145 0.855 26 H 0.078 0.922 27 H 0.174 0.826 28 H 0.266 0.734 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.710 -4.029 0.720 22.092 hybrid contribution 0.798 1.169 0.312 1.449 sum -20.912 -2.860 1.032 21.132 Atomic orbital electron populations 1.23252 0.75674 1.05486 1.02349 1.86300 1.24133 1.21273 1.89221 1.20380 0.91168 0.85655 0.96053 1.20765 0.94188 0.95040 1.24759 1.17373 0.80175 0.89980 0.98006 1.41590 1.00802 1.10849 1.76254 1.15037 0.79170 0.84129 0.77980 1.90858 1.85262 1.12836 1.58757 1.48902 1.03556 1.11780 1.74923 1.23856 0.94662 0.82176 1.02044 1.20709 0.92799 0.93293 0.96480 1.20917 1.06845 1.06207 1.20975 0.93964 1.25894 0.95565 0.97653 0.98893 1.70046 1.24475 1.19283 1.44585 0.85844 0.81658 0.77048 0.78929 1.20400 1.21830 1.14639 1.22987 0.75349 0.99053 1.00991 1.45639 0.99487 1.09080 1.64338 0.69339 1.77359 1.10984 0.94909 1.35295 0.92177 0.85479 0.92183 0.82582 0.73416 0.89133 0.89666 0.91303 0.92418 0.91211 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.69 113.37 1.21 1.66 16 2 O -0.31 -8.12 10.58 -93.38 -0.99 -9.11 16 3 C 0.27 7.96 7.88 85.27 0.67 8.63 16 4 C -0.32 -10.16 9.67 22.23 0.21 -9.94 16 5 C 0.37 9.79 8.10 131.13 1.06 10.86 16 6 N -0.64 -16.07 5.43 -321.94 -1.75 -17.82 16 7 C 0.73 24.35 8.76 179.05 1.57 25.91 16 8 O -0.60 -24.05 14.24 -3.99 -0.06 -24.11 16 9 N -0.65 -21.36 3.69 -876.00 -3.23 -24.59 16 10 C 0.09 2.96 7.30 83.27 0.61 3.57 16 11 C -0.01 -0.50 2.96 -11.12 -0.03 -0.53 16 12 C -0.51 -25.07 9.38 25.60 0.24 -24.83 16 13 H 0.04 2.34 8.06 -2.91 -0.02 2.31 16 14 C 0.02 0.94 5.47 84.66 0.46 1.40 16 15 N -0.94 -53.79 13.96 21.45 0.30 -53.49 16 16 Si 0.94 37.65 27.15 68.60 1.86 39.51 16 17 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 18 H -0.29 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.22 -7.43 5.72 99.48 0.57 -6.86 16 20 C 0.14 4.92 8.17 83.18 0.68 5.60 16 21 N -0.46 -9.75 7.39 -55.07 -0.41 -10.15 16 22 H 0.46 5.73 8.96 -213.35 -1.91 3.82 16 23 N -0.34 -8.83 12.08 -170.58 -2.06 -10.89 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.16 5.86 5.82 -2.91 -0.02 5.85 16 28 H 0.43 7.48 8.54 -92.71 -0.79 6.69 16 29 H 0.09 2.83 8.10 -2.39 -0.02 2.81 16 30 H 0.09 2.22 7.15 -2.38 -0.02 2.21 16 31 H 0.07 2.60 7.03 -2.39 -0.02 2.58 16 32 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.08 2.91 8.10 -2.38 -0.02 2.89 16 Total: -1.00 -67.28 295.48 -1.32 -68.60 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -1.68 Total: 19.72 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 6.69 Total: 22.34 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -7.15 Total: -116.95 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.04 Total: -33.22 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 1.86 Total: 39.51 kcal Total: -67.28 -1.32 -68.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599852116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.298 kcal (2) G-P(sol) polarization free energy of solvation -67.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds