Wall clock time and date at job start Mon Mar 30 2020 04:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35347 * 117.00323 * 2 1 4 4 N 1.30551 * 125.45218 * 180.29781 * 3 2 1 5 5 C 1.36332 * 108.38789 * 180.16500 * 4 3 2 6 6 C 1.47365 * 126.41497 * 179.82748 * 5 4 3 7 7 O 1.21626 * 120.00136 * 184.71202 * 6 5 4 8 8 N 1.34778 * 119.99856 * 4.70774 * 6 5 4 9 9 C 1.46499 * 119.99845 * 185.04795 * 8 6 5 10 10 C 1.53001 * 109.47306 * 174.79293 * 9 8 6 11 11 C 1.50701 * 115.55005 * 65.05881 * 10 9 8 12 12 H 1.07998 * 119.99718 * 264.79089 * 11 10 9 13 13 C 1.37874 * 119.99961 * 84.78498 * 11 10 9 14 14 N 1.31518 * 119.99993 * 4.95861 * 13 11 10 15 15 Si 1.86798 * 119.99837 * 184.95943 * 13 11 10 16 16 H 1.48495 * 109.47490 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47390 * 120.00221 * 15 13 11 18 18 H 1.48507 * 109.47049 * 240.00178 * 15 13 11 19 19 C 1.53004 * 117.49785 * 279.39162 * 10 9 8 20 20 C 1.52994 * 117.49954 * 210.72993 * 10 9 8 21 21 C 1.35921 * 107.16922 * 359.56788 * 5 4 3 22 22 O 1.34208 * 125.44727 * 359.97438 * 3 2 1 23 23 H 1.08999 * 109.46910 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46805 * 299.99562 * 1 2 3 25 25 H 1.09003 * 109.47266 * 59.99656 * 1 2 3 26 26 H 0.96998 * 119.99949 * 4.77017 * 8 6 5 27 27 H 1.09004 * 109.47239 * 294.79099 * 9 8 6 28 28 H 1.09002 * 109.47447 * 54.79122 * 9 8 6 29 29 H 0.96998 * 119.99509 * 185.00360 * 14 13 11 30 30 H 1.08997 * 117.49646 * 359.97438 * 19 10 9 31 31 H 1.08993 * 117.49826 * 145.01735 * 19 10 9 32 32 H 1.09006 * 117.50099 * 214.97899 * 20 10 9 33 33 H 1.09005 * 117.49891 * 359.97438 * 20 10 9 34 34 H 1.07997 * 126.45145 * 180.29746 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 7 3.3348 1.3977 -0.0055 5 6 3.5702 2.7406 0.0003 6 6 4.8893 3.3976 0.0006 7 8 4.9658 4.6079 0.0926 8 7 6.0108 2.6571 -0.1010 9 6 7.3238 3.2974 0.0103 10 6 8.4167 2.2269 -0.0096 11 6 8.5429 1.4507 -1.2952 12 1 8.0426 0.4996 -1.4030 13 6 9.2968 1.9547 -2.3336 14 7 9.9846 3.0636 -2.1691 15 14 9.3415 1.0626 -3.9742 16 1 8.4891 -0.1512 -3.9011 17 1 8.8327 1.9618 -5.0407 18 1 10.7389 0.6674 -4.2849 19 6 8.6993 1.4814 1.2963 20 6 9.7006 2.5135 0.7715 21 6 2.3603 3.3600 -0.0002 22 8 1.4228 2.3958 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 5.9487 1.6997 -0.2438 27 1 7.4678 3.9792 -0.8279 28 1 7.3782 3.8548 0.9455 29 1 10.4563 3.4575 -2.9196 30 1 8.1069 1.7541 2.1697 31 1 8.9768 0.4298 1.2256 32 1 10.6366 2.1403 0.3557 33 1 9.7670 3.4649 1.2992 34 1 2.1850 4.4256 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599873513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:27 Heat of formation + Delta-G solvation = -43.887320 kcal Electronic energy + Delta-G solvation = -19710.004037 eV Core-core repulsion = 16417.449733 eV Total energy + Delta-G solvation = -3292.554304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.52164 -40.60123 -39.74388 -38.46149 -36.05846 -34.92775 -33.94978 -31.23488 -28.45353 -28.26754 -27.30087 -24.79060 -23.38371 -22.91061 -21.59827 -21.26747 -19.94296 -18.56938 -18.42188 -17.98573 -17.35653 -16.73068 -16.59015 -16.31639 -16.27800 -15.89578 -15.52095 -14.88780 -14.50777 -14.30389 -13.77026 -13.47675 -13.07789 -12.96275 -12.91058 -12.83891 -12.34878 -12.05759 -12.02249 -11.86937 -11.51945 -11.22727 -10.98936 -10.41855 -10.10397 -9.94492 -9.69528 -8.10649 -6.22764 0.04975 0.87416 0.95106 1.40238 1.43944 1.53832 1.74825 2.20903 2.26235 2.43645 3.17870 3.38744 3.59680 3.78459 4.14432 4.23277 4.24320 4.27350 4.44199 4.54320 4.63589 4.66349 4.70672 4.72725 4.98754 5.03602 5.29365 5.50176 5.56361 5.62854 5.69979 5.77804 6.37111 6.40112 6.70384 6.84323 7.16663 7.46526 8.97458 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020316 B = 0.004950 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.907453 B = 5655.343294 C = 6161.039349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.256 6.256 3 C 0.382 3.618 4 N -0.487 5.487 5 C -0.075 4.075 6 C 0.591 3.409 7 O -0.576 6.576 8 N -0.684 5.684 9 C 0.177 3.823 10 C -0.002 4.002 11 C -0.504 4.504 12 H 0.056 0.944 13 C 0.028 3.972 14 N -0.904 5.904 15 Si 0.945 3.055 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.282 1.282 19 C -0.181 4.181 20 C -0.146 4.146 21 C 0.032 3.968 22 O -0.212 6.212 23 H 0.146 0.854 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.412 0.588 27 H 0.036 0.964 28 H 0.049 0.951 29 H 0.260 0.740 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.972 -3.587 4.745 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.164 6.164 3 C 0.136 3.864 4 N -0.233 5.233 5 C -0.192 4.192 6 C 0.377 3.623 7 O -0.458 6.458 8 N -0.331 5.331 9 C 0.054 3.946 10 C -0.003 4.003 11 C -0.542 4.542 12 H 0.075 0.925 13 C -0.173 4.173 14 N -0.541 5.541 15 Si 0.771 3.229 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.208 1.208 19 C -0.218 4.218 20 C -0.184 4.184 21 C -0.041 4.041 22 O -0.103 6.103 23 H 0.164 0.836 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.248 0.752 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -19.277 -3.416 4.737 20.142 hybrid contribution -0.178 -0.114 -1.116 1.136 sum -19.454 -3.530 3.621 20.101 Atomic orbital electron populations 1.23718 0.72549 1.07770 1.03972 1.86428 1.26243 1.14734 1.89040 1.23408 0.85377 0.80419 0.97243 1.71043 1.11435 1.16263 1.24609 1.21501 0.95757 0.88755 1.13223 1.17029 0.82822 0.85722 0.76697 1.90763 1.87335 1.13929 1.53786 1.45794 1.05190 1.12599 1.69555 1.20714 0.80914 0.94553 0.98462 1.19090 0.93672 0.96456 0.91057 1.20664 1.29930 1.05353 0.98224 0.92543 1.25631 0.94036 0.96022 1.01589 1.70119 1.31626 1.21056 1.31340 0.85704 0.77698 0.78965 0.80485 1.19116 1.21086 1.20766 1.22996 1.04122 0.97054 0.97668 1.22396 0.94462 0.98239 1.03309 1.25539 0.83671 0.94756 1.00134 1.84409 1.38849 1.15380 1.71649 0.83633 0.90298 0.90502 0.75183 0.94553 0.93309 0.93134 0.89426 0.89966 0.91601 0.90734 0.71447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.73 113.37 1.22 1.34 16 2 O -0.26 -5.33 10.55 -64.16 -0.68 -6.01 16 3 C 0.38 9.85 8.98 130.43 1.17 11.02 16 4 N -0.49 -15.99 11.12 -419.39 -4.66 -20.65 16 5 C -0.07 -2.41 6.99 40.31 0.28 -2.13 16 6 C 0.59 23.45 7.80 86.65 0.68 24.12 16 7 O -0.58 -25.06 16.90 -4.11 -0.07 -25.13 16 8 N -0.68 -29.04 5.47 -466.41 -2.55 -31.59 16 9 C 0.18 8.33 5.51 86.38 0.48 8.81 16 10 C 0.00 -0.10 1.47 -52.93 -0.08 -0.18 16 11 C -0.50 -26.94 8.59 25.60 0.22 -26.72 16 12 H 0.06 3.00 7.82 -2.91 -0.02 2.98 16 13 C 0.03 1.52 5.43 84.65 0.46 1.98 16 14 N -0.90 -51.54 12.66 21.45 0.27 -51.27 16 15 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 C -0.18 -7.64 9.96 30.62 0.30 -7.33 16 20 C -0.15 -6.82 9.15 30.62 0.28 -6.54 16 21 C 0.03 0.73 11.93 67.28 0.80 1.54 16 22 O -0.21 -4.51 10.20 18.91 0.19 -4.31 16 23 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.41 17.35 8.07 -92.71 -0.75 16.60 16 27 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 2.20 8.09 -2.39 -0.02 2.18 16 29 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 30 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.07 3.34 8.14 -2.38 -0.02 3.32 16 33 H 0.07 3.27 8.14 -2.38 -0.02 3.25 16 34 H 0.27 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -67.93 309.80 0.72 -67.21 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.38 Total: 20.24 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 5.81 Total: 5.90 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -6.95 Total: -103.51 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.55 Total: -35.45 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -67.93 0.72 -67.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599873513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.319 kcal (2) G-P(sol) polarization free energy of solvation -67.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds