Wall clock time and date at job start Mon Mar 30 2020 04:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99659 * 2 1 4 4 N 1.46496 * 109.47119 * 124.99678 * 3 2 1 5 5 C 1.46500 * 120.00217 * 263.37382 * 4 3 2 6 6 C 1.50701 * 109.46810 * 269.99708 * 5 4 3 7 7 H 1.08000 * 120.00225 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00166 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99458 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00181 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47091 * 60.00217 * 10 8 6 12 12 H 1.48496 * 109.47089 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47200 * 299.99966 * 10 8 6 14 14 C 1.34777 * 119.99952 * 83.37017 * 4 3 2 15 15 O 1.21626 * 120.00300 * 183.88610 * 14 4 3 16 16 C 1.47370 * 119.99822 * 3.88122 * 14 4 3 17 17 C 1.35921 * 126.41287 * 173.64059 * 16 14 4 18 18 O 1.34480 * 107.08598 * 180.02562 * 17 16 14 19 19 C 1.34198 * 108.25412 * 0.02562 * 18 17 16 20 20 O 1.35348 * 125.45249 * 179.97438 * 19 18 17 21 21 C 1.42903 * 116.99721 * 359.97438 * 20 19 18 22 22 N 1.30557 * 109.10383 * 0.02562 * 19 18 17 23 23 H 1.07992 * 120.00422 * 0.02562 * 1 2 3 24 24 H 1.08003 * 119.99248 * 179.97438 * 1 2 3 25 25 H 1.07992 * 120.00422 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47064 * 4.99638 * 3 2 1 27 27 H 1.08996 * 109.46943 * 245.00054 * 3 2 1 28 28 H 1.08997 * 109.47208 * 29.99559 * 5 4 3 29 29 H 1.08996 * 109.47223 * 150.00299 * 5 4 3 30 30 H 0.97009 * 119.99851 * 179.97438 * 9 8 6 31 31 H 1.07999 * 126.45115 * 0.05114 * 17 16 14 32 32 H 1.08991 * 109.47393 * 300.00657 * 21 20 19 33 33 H 1.08999 * 109.46818 * 60.00785 * 21 20 19 34 34 H 1.09001 * 109.46863 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.6095 1.9951 2.3800 6 6 3.0257 3.4426 2.3287 7 1 3.5267 3.8298 1.4537 8 6 2.7670 4.2728 3.3987 9 7 2.1574 3.8012 4.4643 10 14 3.2823 6.0671 3.3348 11 1 2.6094 6.7349 2.1919 12 1 2.8919 6.7396 4.5999 13 1 4.7546 6.1534 3.1617 14 6 4.2029 0.7467 1.0237 15 8 4.9471 0.7070 1.9849 16 6 4.6232 0.1545 -0.2586 17 6 5.8490 -0.3566 -0.5480 18 8 5.8060 -0.7899 -1.8204 19 6 4.5779 -0.5496 -2.3050 20 8 4.1554 -0.8477 -3.5558 21 6 5.1004 -1.4697 -4.4288 22 7 3.8562 0.0188 -1.3774 23 1 -0.5400 0.9352 -0.0004 24 1 -0.5399 -0.9354 -0.0004 25 1 1.8501 -0.9352 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6212 1.4027 -0.9314 28 1 1.5288 1.9322 2.5073 29 1 3.1033 1.5047 3.2188 30 1 1.9756 4.3851 5.2174 31 1 6.6973 -0.4059 0.1185 32 1 5.9612 -0.8140 -4.5589 33 1 5.4264 -2.4158 -3.9966 34 1 4.6342 -1.6544 -5.3966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599962907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:30 Heat of formation + Delta-G solvation = -3.862383 kcal Electronic energy + Delta-G solvation = -20165.539317 eV Core-core repulsion = 16874.720625 eV Total energy + Delta-G solvation = -3290.818692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.36696 -39.12257 -38.67146 -35.62589 -34.73721 -33.07960 -31.92721 -30.04303 -27.67910 -27.58532 -25.43446 -24.17447 -22.61817 -21.84452 -19.99825 -19.38452 -17.97653 -17.50627 -16.68405 -16.42963 -16.33203 -15.43362 -15.28122 -15.22153 -14.50417 -14.25387 -14.00146 -13.34334 -12.80638 -12.68400 -12.49642 -12.20845 -12.10251 -11.64780 -11.24097 -11.06411 -10.87756 -10.71036 -10.53315 -10.28660 -10.15623 -9.58588 -9.25459 -8.84323 -8.61740 -8.39127 -7.62431 -6.00551 -4.05500 1.29515 1.89508 2.24351 2.74213 2.77008 3.35541 3.39193 3.42270 3.81209 3.98676 4.46873 4.61657 4.70176 4.75754 5.01027 5.05601 5.28244 5.34097 5.50189 5.59251 5.70116 5.83769 6.10426 6.35422 6.46123 6.73405 7.05698 7.09644 7.23163 7.47498 7.54812 7.64803 7.95874 8.26028 8.40717 8.87394 9.04663 9.59098 11.07475 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023463 B = 0.005326 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.095998 B = 5256.037157 C = 5733.112966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C 0.128 3.872 4 N -0.571 5.571 5 C 0.245 3.755 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.586 3.414 15 O -0.537 6.537 16 C -0.030 4.030 17 C -0.013 4.013 18 O -0.230 6.230 19 C 0.365 3.635 20 O -0.246 6.246 21 C 0.025 3.975 22 N -0.443 5.443 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.234 0.766 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.094 -10.772 -16.567 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.153 4.153 3 C 0.005 3.995 4 N -0.300 5.300 5 C 0.127 3.873 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.371 3.629 15 O -0.415 6.415 16 C -0.149 4.149 17 C -0.085 4.085 18 O -0.122 6.122 19 C 0.120 3.880 20 O -0.154 6.154 21 C -0.070 4.070 22 N -0.189 5.189 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.250 0.750 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.606 -10.535 -16.112 19.586 hybrid contribution 1.075 0.617 -0.140 1.247 sum 4.681 -9.918 -16.252 19.606 Atomic orbital electron populations 1.23702 0.95842 1.01277 1.03334 1.23240 0.95716 0.98998 0.97306 1.20965 0.92904 0.94731 0.90883 1.48088 1.13313 1.52087 1.16463 1.19389 0.96190 0.91828 0.79940 1.21399 1.38725 0.94278 1.02278 0.92404 1.24921 0.95062 0.98901 0.95097 1.69931 1.41501 1.36098 1.05745 0.86548 0.79128 0.84464 0.77220 1.20229 1.21182 1.20191 1.16715 0.82794 0.79021 0.84387 1.90801 1.53212 1.60057 1.37415 1.22200 0.91796 1.05861 0.95033 1.24906 1.01195 1.00912 0.81459 1.84330 1.34575 1.65935 1.27344 1.23753 0.79421 0.96343 0.88472 1.86372 1.36973 1.76651 1.15397 1.23241 0.93062 0.97643 0.93061 1.71563 1.29086 1.19681 0.98583 0.88596 0.89217 0.88300 0.90121 0.87504 0.94545 0.93571 0.92653 0.74968 0.91576 0.91617 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.13 14.32 29.01 0.42 -2.71 16 2 C -0.13 -2.30 8.92 -36.03 -0.32 -2.62 16 3 C 0.13 2.47 5.45 -5.19 -0.03 2.45 16 4 N -0.57 -13.08 2.46 -177.73 -0.44 -13.51 16 5 C 0.25 6.62 5.16 -5.19 -0.03 6.59 16 6 C -0.53 -15.22 9.39 -34.44 -0.32 -15.54 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 10 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.59 13.03 7.60 -12.54 -0.10 12.93 16 15 O -0.54 -13.51 16.45 5.25 0.09 -13.43 16 16 C -0.03 -0.53 6.64 -82.98 -0.55 -1.08 16 17 C -0.01 -0.19 11.94 29.90 0.36 0.17 16 18 O -0.23 -2.92 10.20 -17.72 -0.18 -3.10 16 19 C 0.37 5.04 8.98 52.22 0.47 5.50 16 20 O -0.25 -2.77 10.55 -40.97 -0.43 -3.20 16 21 C 0.02 0.15 10.73 101.05 1.08 1.24 16 22 N -0.44 -7.32 6.99 -11.71 -0.08 -7.40 16 23 H 0.10 1.43 7.84 -52.49 -0.41 1.02 16 24 H 0.09 1.20 8.06 -52.48 -0.42 0.78 16 25 H 0.10 1.72 7.81 -52.49 -0.41 1.31 16 26 H 0.08 1.57 7.67 -51.93 -0.40 1.17 16 27 H 0.11 2.00 5.32 -51.93 -0.28 1.72 16 28 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 29 H 0.05 1.38 7.37 -51.93 -0.38 1.00 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 31 H 0.23 2.59 8.06 -52.49 -0.42 2.17 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -33.73 306.13 -3.79 -37.52 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -3.96 Total: -1.10 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 0.88 Total: 8.63 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.22 Total: -46.96 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.53 Total: -19.73 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.73 -3.79 -37.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599962907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.655 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds