Wall clock time and date at job start Mon Mar 30 2020 04:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99659 * 2 1 4 4 N 1.46496 * 109.47119 * 124.99678 * 3 2 1 5 5 C 1.46500 * 120.00217 * 263.37382 * 4 3 2 6 6 C 1.50701 * 109.46810 * 269.99708 * 5 4 3 7 7 H 1.08000 * 120.00225 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00166 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99458 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00181 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47091 * 60.00217 * 10 8 6 12 12 H 1.48496 * 109.47089 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47200 * 299.99966 * 10 8 6 14 14 C 1.34777 * 119.99952 * 83.37017 * 4 3 2 15 15 O 1.21626 * 120.00300 * 183.88610 * 14 4 3 16 16 C 1.47370 * 119.99822 * 3.88122 * 14 4 3 17 17 C 1.35921 * 126.41287 * 173.64059 * 16 14 4 18 18 O 1.34480 * 107.08598 * 180.02562 * 17 16 14 19 19 C 1.34198 * 108.25412 * 0.02562 * 18 17 16 20 20 O 1.35348 * 125.45249 * 179.97438 * 19 18 17 21 21 C 1.42903 * 116.99721 * 359.97438 * 20 19 18 22 22 N 1.30557 * 109.10383 * 0.02562 * 19 18 17 23 23 H 1.07992 * 120.00422 * 0.02562 * 1 2 3 24 24 H 1.08003 * 119.99248 * 179.97438 * 1 2 3 25 25 H 1.07992 * 120.00422 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47064 * 4.99638 * 3 2 1 27 27 H 1.08996 * 109.46943 * 245.00054 * 3 2 1 28 28 H 1.08997 * 109.47208 * 29.99559 * 5 4 3 29 29 H 1.08996 * 109.47223 * 150.00299 * 5 4 3 30 30 H 0.97009 * 119.99851 * 179.97438 * 9 8 6 31 31 H 1.07999 * 126.45115 * 0.05114 * 17 16 14 32 32 H 1.08991 * 109.47393 * 300.00657 * 21 20 19 33 33 H 1.08999 * 109.46818 * 60.00785 * 21 20 19 34 34 H 1.09001 * 109.46863 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.6095 1.9951 2.3800 6 6 3.0257 3.4426 2.3287 7 1 3.5267 3.8298 1.4537 8 6 2.7670 4.2728 3.3987 9 7 2.1574 3.8012 4.4643 10 14 3.2823 6.0671 3.3348 11 1 2.6094 6.7349 2.1919 12 1 2.8919 6.7396 4.5999 13 1 4.7546 6.1534 3.1617 14 6 4.2029 0.7467 1.0237 15 8 4.9471 0.7070 1.9849 16 6 4.6232 0.1545 -0.2586 17 6 5.8490 -0.3566 -0.5480 18 8 5.8060 -0.7899 -1.8204 19 6 4.5779 -0.5496 -2.3050 20 8 4.1554 -0.8477 -3.5558 21 6 5.1004 -1.4697 -4.4288 22 7 3.8562 0.0188 -1.3774 23 1 -0.5400 0.9352 -0.0004 24 1 -0.5399 -0.9354 -0.0004 25 1 1.8501 -0.9352 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6212 1.4027 -0.9314 28 1 1.5288 1.9322 2.5073 29 1 3.1033 1.5047 3.2188 30 1 1.9756 4.3851 5.2174 31 1 6.6973 -0.4059 0.1185 32 1 5.9612 -0.8140 -4.5589 33 1 5.4264 -2.4158 -3.9966 34 1 4.6342 -1.6544 -5.3966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599962907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:30 Heat of formation + Delta-G solvation = -28.530540 kcal Electronic energy + Delta-G solvation = -20166.609008 eV Core-core repulsion = 16874.720625 eV Total energy + Delta-G solvation = -3291.888384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.50591 -40.65579 -39.70081 -37.30911 -36.01180 -35.01945 -33.66778 -31.23404 -29.62746 -28.26026 -26.97582 -25.98283 -23.97820 -23.21996 -21.38941 -20.67953 -19.30589 -18.67244 -18.50642 -18.08151 -17.38525 -17.20909 -16.28968 -16.26037 -16.17983 -15.89856 -15.52077 -14.56676 -14.45031 -14.31933 -14.11380 -13.32524 -13.15605 -13.05922 -12.97039 -12.83997 -12.57488 -12.26383 -12.19490 -11.95620 -11.75908 -11.49977 -10.99835 -10.63179 -10.18941 -9.81917 -9.43400 -8.21133 -6.36538 0.08764 0.90694 1.00740 1.38073 1.40194 1.43021 1.50951 1.77449 2.20021 2.40587 2.44854 3.08355 3.39296 3.81980 4.06922 4.17464 4.24936 4.28583 4.29768 4.42842 4.58561 4.67099 4.67995 4.96710 5.04894 5.14086 5.21410 5.51087 5.67670 5.75580 5.78231 5.99771 6.04971 6.43867 6.66476 6.71477 7.18794 7.36845 8.86220 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023463 B = 0.005326 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.095998 B = 5256.037157 C = 5733.112966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.153 4.153 3 C 0.133 3.867 4 N -0.581 5.581 5 C 0.263 3.737 6 C -0.547 4.547 7 H 0.053 0.947 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.970 3.030 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.275 1.275 14 C 0.582 3.418 15 O -0.580 6.580 16 C -0.068 4.068 17 C 0.026 3.974 18 O -0.213 6.213 19 C 0.379 3.621 20 O -0.253 6.253 21 C 0.014 3.986 22 N -0.469 5.469 23 H 0.100 0.900 24 H 0.115 0.885 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.023 0.977 29 H 0.006 0.994 30 H 0.268 0.732 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -10.957 -18.806 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.172 4.172 3 C 0.011 3.989 4 N -0.308 5.308 5 C 0.142 3.858 6 C -0.585 4.585 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.794 3.206 11 H -0.188 1.188 12 H -0.201 1.201 13 H -0.200 1.200 14 C 0.370 3.630 15 O -0.461 6.461 16 C -0.185 4.185 17 C -0.047 4.047 18 O -0.104 6.104 19 C 0.133 3.867 20 O -0.161 6.161 21 C -0.080 4.080 22 N -0.215 5.215 23 H 0.118 0.882 24 H 0.133 0.867 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.132 0.868 28 H 0.041 0.959 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.278 0.722 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.147 -10.742 -18.411 21.715 hybrid contribution 0.897 0.553 0.430 1.138 sum 5.045 -10.189 -17.981 21.274 Atomic orbital electron populations 1.23952 0.95181 1.02698 1.00201 1.23043 0.96273 0.97779 1.00126 1.21042 0.92357 0.95698 0.89773 1.48063 1.14622 1.52128 1.16028 1.18847 0.94683 0.91322 0.80953 1.21633 1.39153 0.95283 1.02480 0.92903 1.25846 0.94727 1.03759 0.94470 1.70051 1.42155 1.37933 1.06402 0.85440 0.78663 0.78570 0.77973 1.18759 1.20124 1.20007 1.17203 0.81891 0.78213 0.85677 1.90751 1.54184 1.61780 1.39419 1.21488 0.93726 1.09246 0.94083 1.25377 1.00321 0.97345 0.81658 1.84389 1.34111 1.65362 1.26513 1.23753 0.79085 0.94871 0.89009 1.86426 1.38530 1.76748 1.14398 1.23696 0.93113 0.97920 0.93269 1.71352 1.29881 1.21392 0.98908 0.88195 0.86657 0.88508 0.91071 0.86786 0.95856 0.97553 0.92263 0.72190 0.90638 0.90540 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.39 14.32 67.78 0.97 -4.42 16 2 C -0.15 -5.28 8.92 25.64 0.23 -5.05 16 3 C 0.13 5.27 5.45 85.63 0.47 5.73 16 4 N -0.58 -27.74 2.46 -834.46 -2.05 -29.79 16 5 C 0.26 14.93 5.16 85.63 0.44 15.37 16 6 C -0.55 -32.54 9.39 25.60 0.24 -32.30 16 7 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 8 C 0.01 0.66 5.46 84.66 0.46 1.13 16 9 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 10 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 14 C 0.58 26.83 7.60 86.65 0.66 27.48 16 15 O -0.58 -30.49 16.45 -4.11 -0.07 -30.55 16 16 C -0.07 -2.40 6.64 40.31 0.27 -2.13 16 17 C 0.03 0.67 11.94 67.28 0.80 1.48 16 18 O -0.21 -4.82 10.20 19.01 0.19 -4.62 16 19 C 0.38 9.69 8.98 130.43 1.17 10.86 16 20 O -0.25 -5.05 10.55 -64.16 -0.68 -5.73 16 21 C 0.01 0.12 10.73 113.37 1.22 1.34 16 22 N -0.47 -15.16 6.99 -419.39 -2.93 -18.09 16 23 H 0.10 2.87 7.84 -2.91 -0.02 2.85 16 24 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 25 H 0.10 3.38 7.81 -2.91 -0.02 3.36 16 26 H 0.07 2.87 7.67 -2.39 -0.02 2.85 16 27 H 0.11 4.33 5.32 -2.39 -0.01 4.32 16 28 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 29 H 0.01 0.41 7.37 -2.39 -0.02 0.39 16 30 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 31 H 0.26 5.18 8.06 -2.91 -0.02 5.16 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -75.53 306.13 4.81 -70.71 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.11 Total: 7.52 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 6.93 Total: 19.49 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -4.70 Total: -104.30 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.55 Total: -40.90 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -75.53 4.81 -70.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599962907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.183 kcal (2) G-P(sol) polarization free energy of solvation -75.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds