Wall clock time and date at job start Mon Mar 30 2020 04:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35513 * 117.00363 * 2 1 4 4 C 1.39186 * 120.89943 * 359.97438 * 3 2 1 5 5 C 1.37921 * 119.39832 * 180.02562 * 4 3 2 6 6 N 1.32086 * 121.30305 * 0.02562 * 5 4 3 7 7 C 1.32177 * 121.97716 * 359.69839 * 6 5 4 8 8 O 1.35431 * 119.77818 * 180.29246 * 7 6 5 9 9 C 1.42903 * 117.00285 * 0.29389 * 8 7 6 10 10 C 1.40352 * 120.44066 * 0.58920 * 7 6 5 11 11 C 1.47132 * 120.65947 * 179.70536 * 10 7 6 12 12 O 1.21652 * 120.00133 * 269.71848 * 11 10 7 13 13 N 1.34778 * 120.00102 * 89.72050 * 11 10 7 14 14 C 1.46503 * 119.99930 * 359.97438 * 13 11 10 15 15 C 1.36933 * 119.99960 * 180.02562 * 13 11 10 16 16 H 1.08002 * 120.00054 * 338.16305 * 15 13 11 17 17 C 1.39000 * 119.99994 * 158.45177 * 15 13 11 18 18 N 1.31395 * 119.99937 * 344.31202 * 17 15 13 19 19 Si 1.86806 * 120.00119 * 164.32209 * 17 15 13 20 20 H 1.48500 * 109.47324 * 89.99380 * 19 17 15 21 21 H 1.48500 * 109.46944 * 209.99816 * 19 17 15 22 22 H 1.48506 * 109.46551 * 329.99412 * 19 17 15 23 23 H 1.08999 * 109.47172 * 59.99950 * 1 2 3 24 24 H 1.09004 * 109.47184 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47438 * 299.99964 * 1 2 3 26 26 H 1.08005 * 120.30077 * 0.04800 * 4 3 2 27 27 H 1.07998 * 119.34878 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47010 * 299.99842 * 9 8 7 29 29 H 1.09000 * 109.47249 * 59.99757 * 9 8 7 30 30 H 1.09003 * 109.47359 * 180.02562 * 9 8 7 31 31 H 1.09001 * 109.47139 * 271.79895 * 14 13 11 32 32 H 1.08998 * 109.46844 * 31.80240 * 14 13 11 33 33 H 1.09000 * 109.47195 * 151.80040 * 14 13 11 34 34 H 0.96998 * 119.99782 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3047 2.3865 -0.0005 5 6 1.9629 3.5985 -0.0011 6 7 3.2821 3.6630 -0.0016 7 6 4.0360 2.5773 0.0043 8 8 5.3852 2.6953 0.0095 9 6 5.9206 4.0203 0.0148 10 6 3.4477 1.3031 -0.0011 11 6 4.2823 0.0914 -0.0011 12 8 4.6270 -0.4098 -1.0546 13 7 4.6650 -0.4634 1.1661 14 6 4.2504 0.1405 2.4349 15 6 5.4422 -1.5908 1.1660 16 1 5.4621 -2.2329 0.2979 17 6 6.2009 -1.9119 2.2856 18 7 6.4223 -1.0060 3.2111 19 14 6.9059 -3.6315 2.4742 20 1 8.2536 -3.6849 1.8527 21 1 7.0123 -3.9674 3.9168 22 1 6.0121 -4.6092 1.8029 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2251 2.3527 -0.0002 27 1 1.3882 4.5129 -0.0019 28 1 5.5836 4.5519 -0.8751 29 1 5.5771 4.5474 0.9049 30 1 7.0095 3.9721 0.0182 31 1 4.9779 0.8956 2.7327 32 1 3.2725 0.6061 2.3131 33 1 4.1925 -0.6310 3.2027 34 1 6.9521 -1.2300 3.9922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601024067.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:01 Heat of formation + Delta-G solvation = -50.427205 kcal Electronic energy + Delta-G solvation = -20896.332974 eV Core-core repulsion = 17603.495080 eV Total energy + Delta-G solvation = -3292.837894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.68307 -38.84183 -37.88930 -36.95113 -34.50492 -31.88147 -31.04158 -30.41503 -27.75904 -26.66371 -26.18030 -24.91894 -23.29125 -22.19753 -19.63808 -18.56847 -17.34114 -16.84303 -16.41529 -16.11665 -15.73641 -15.38160 -14.97834 -14.79462 -14.14916 -13.97576 -13.66989 -13.28549 -13.02679 -12.89065 -12.32937 -11.63476 -11.57069 -11.50377 -11.34915 -11.25009 -11.08126 -10.86676 -10.78405 -10.31634 -10.19707 -9.67861 -8.94582 -8.67243 -8.43813 -8.06906 -7.56844 -6.24380 -3.75542 1.31550 1.56656 2.97333 3.22058 3.30134 3.36782 3.74689 3.90260 3.94085 4.21959 4.53096 4.81930 4.95856 5.12399 5.15814 5.16642 5.30257 5.48586 5.49426 5.54513 5.58221 5.81821 5.97129 6.05914 6.15319 6.34128 6.45151 6.95585 7.27860 7.37180 7.56596 7.65533 8.07731 8.23071 8.59022 9.27422 9.52029 10.10127 10.80690 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.007524 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.655188 B = 3720.558247 C = 4569.260775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.292 6.292 3 C 0.218 3.782 4 C -0.303 4.303 5 C 0.171 3.829 6 N -0.564 5.564 7 C 0.377 3.623 8 O -0.283 6.283 9 C 0.042 3.958 10 C -0.191 4.191 11 C 0.509 3.491 12 O -0.581 6.581 13 N -0.429 5.429 14 C 0.120 3.880 15 C -0.302 4.302 16 H 0.100 0.900 17 C 0.030 3.970 18 N -0.878 5.878 19 Si 0.925 3.075 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.269 1.269 23 H 0.057 0.943 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.140 0.860 27 H 0.160 0.840 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.018 0.982 33 H 0.072 0.928 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 8.844 -1.130 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.202 6.202 3 C 0.163 3.837 4 C -0.325 4.325 5 C 0.015 3.985 6 N -0.292 5.292 7 C 0.199 3.801 8 O -0.188 6.188 9 C -0.053 4.053 10 C -0.198 4.198 11 C 0.296 3.704 12 O -0.466 6.466 13 N -0.146 5.146 14 C -0.024 4.024 15 C -0.431 4.431 16 H 0.117 0.883 17 C -0.173 4.173 18 N -0.517 5.517 19 Si 0.751 3.249 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.194 1.194 23 H 0.076 0.924 24 H 0.121 0.879 25 H 0.076 0.924 26 H 0.158 0.842 27 H 0.177 0.823 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.728 8.937 -1.424 13.287 hybrid contribution -0.353 -1.012 0.368 1.133 sum -10.081 7.925 -1.056 12.866 Atomic orbital electron populations 1.23147 0.78017 1.04342 1.01338 1.86166 1.21462 1.25784 1.86777 1.18963 0.90334 0.84805 0.89571 1.21884 1.01210 0.92715 1.16663 1.22077 0.88614 0.96890 0.90910 1.67343 1.07829 1.30820 1.23235 1.19431 0.84417 0.87595 0.88688 1.86386 1.15266 1.30796 1.86398 1.22867 0.98715 0.81742 1.01989 1.19360 0.91315 0.94874 1.14299 1.17095 0.84765 0.83732 0.84841 1.90608 1.60682 1.64094 1.31181 1.43404 1.43555 1.24016 1.03643 1.21370 0.95186 0.98643 0.87175 1.19637 1.21886 0.99068 1.02459 0.88257 1.25327 0.96285 0.99277 0.96425 1.70038 1.38109 1.32580 1.11007 0.85959 0.79344 0.82318 0.77238 1.20304 1.20883 1.19411 0.92438 0.87892 0.92371 0.84201 0.82305 0.92494 0.92326 0.88622 0.92944 0.96307 0.90931 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.84 101.05 0.99 1.29 16 2 O -0.29 -5.36 10.03 -18.23 -0.18 -5.54 16 3 C 0.22 4.10 6.32 -38.31 -0.24 3.86 16 4 C -0.30 -4.28 9.09 -39.35 -0.36 -4.64 16 5 C 0.17 2.36 11.15 -17.56 -0.20 2.17 16 6 N -0.56 -9.73 9.20 -13.04 -0.12 -9.85 16 7 C 0.38 7.87 7.51 -16.61 -0.12 7.75 16 8 O -0.28 -6.07 9.94 -17.98 -0.18 -6.25 16 9 C 0.04 0.65 10.38 101.05 1.05 1.70 16 10 C -0.19 -4.36 3.97 -104.57 -0.42 -4.78 16 11 C 0.51 14.12 6.23 -12.65 -0.08 14.04 16 12 O -0.58 -18.11 16.79 5.23 0.09 -18.02 16 13 N -0.43 -12.06 3.01 -123.52 -0.37 -12.43 16 14 C 0.12 2.99 8.50 59.85 0.51 3.50 16 15 C -0.30 -8.95 9.28 -14.99 -0.14 -9.09 16 16 H 0.10 3.05 7.41 -52.49 -0.39 2.66 16 17 C 0.03 0.83 5.00 -17.46 -0.09 0.74 16 18 N -0.88 -24.36 10.82 55.50 0.60 -23.76 16 19 Si 0.92 21.39 29.58 -169.99 -5.03 16.36 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H 0.06 0.54 7.71 -51.93 -0.40 0.14 16 24 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.54 7.71 -51.93 -0.40 0.14 16 26 H 0.14 1.42 6.45 -52.48 -0.34 1.08 16 27 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 29 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 30 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.05 1.35 7.76 -51.93 -0.40 0.95 16 32 H 0.02 0.41 6.62 -51.93 -0.34 0.07 16 33 H 0.07 1.84 6.84 -51.93 -0.36 1.48 16 34 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 297.31 15.07 4.48 4.48 Total: -1.00 -36.16 297.31 -3.68 -39.84 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -3.87 Total: -1.36 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 0.91 Total: 16.54 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.11 Total: -46.05 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.27 Total: -29.82 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -36.16 -3.68 -39.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024067.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.590 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds