Wall clock time and date at job start Mon Mar 30 2020 04:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35513 * 117.00363 * 2 1 4 4 C 1.39186 * 120.89943 * 359.97438 * 3 2 1 5 5 C 1.37921 * 119.39832 * 180.02562 * 4 3 2 6 6 N 1.32086 * 121.30305 * 0.02562 * 5 4 3 7 7 C 1.32177 * 121.97716 * 359.69839 * 6 5 4 8 8 O 1.35431 * 119.77818 * 180.29246 * 7 6 5 9 9 C 1.42903 * 117.00285 * 0.29389 * 8 7 6 10 10 C 1.40352 * 120.44066 * 0.58920 * 7 6 5 11 11 C 1.47132 * 120.65947 * 179.70536 * 10 7 6 12 12 O 1.21652 * 120.00133 * 269.71848 * 11 10 7 13 13 N 1.34778 * 120.00102 * 89.72050 * 11 10 7 14 14 C 1.46503 * 119.99930 * 359.97438 * 13 11 10 15 15 C 1.36933 * 119.99960 * 180.02562 * 13 11 10 16 16 H 1.08002 * 120.00054 * 338.16305 * 15 13 11 17 17 C 1.39000 * 119.99994 * 158.45177 * 15 13 11 18 18 N 1.31395 * 119.99937 * 344.31202 * 17 15 13 19 19 Si 1.86806 * 120.00119 * 164.32209 * 17 15 13 20 20 H 1.48500 * 109.47324 * 89.99380 * 19 17 15 21 21 H 1.48500 * 109.46944 * 209.99816 * 19 17 15 22 22 H 1.48506 * 109.46551 * 329.99412 * 19 17 15 23 23 H 1.08999 * 109.47172 * 59.99950 * 1 2 3 24 24 H 1.09004 * 109.47184 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47438 * 299.99964 * 1 2 3 26 26 H 1.08005 * 120.30077 * 0.04800 * 4 3 2 27 27 H 1.07998 * 119.34878 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47010 * 299.99842 * 9 8 7 29 29 H 1.09000 * 109.47249 * 59.99757 * 9 8 7 30 30 H 1.09003 * 109.47359 * 180.02562 * 9 8 7 31 31 H 1.09001 * 109.47139 * 271.79895 * 14 13 11 32 32 H 1.08998 * 109.46844 * 31.80240 * 14 13 11 33 33 H 1.09000 * 109.47195 * 151.80040 * 14 13 11 34 34 H 0.96998 * 119.99782 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3047 2.3865 -0.0005 5 6 1.9629 3.5985 -0.0011 6 7 3.2821 3.6630 -0.0016 7 6 4.0360 2.5773 0.0043 8 8 5.3852 2.6953 0.0095 9 6 5.9206 4.0203 0.0148 10 6 3.4477 1.3031 -0.0011 11 6 4.2823 0.0914 -0.0011 12 8 4.6270 -0.4098 -1.0546 13 7 4.6650 -0.4634 1.1661 14 6 4.2504 0.1405 2.4349 15 6 5.4422 -1.5908 1.1660 16 1 5.4621 -2.2329 0.2979 17 6 6.2009 -1.9119 2.2856 18 7 6.4223 -1.0060 3.2111 19 14 6.9059 -3.6315 2.4742 20 1 8.2536 -3.6849 1.8527 21 1 7.0123 -3.9674 3.9168 22 1 6.0121 -4.6092 1.8029 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2251 2.3527 -0.0002 27 1 1.3882 4.5129 -0.0019 28 1 5.5836 4.5519 -0.8751 29 1 5.5771 4.5474 0.9049 30 1 7.0095 3.9721 0.0182 31 1 4.9779 0.8956 2.7327 32 1 3.2725 0.6061 2.3131 33 1 4.1925 -0.6310 3.2027 34 1 6.9521 -1.2300 3.9922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601024067.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:00 Heat of formation + Delta-G solvation = -79.754018 kcal Electronic energy + Delta-G solvation = -20897.604680 eV Core-core repulsion = 17603.495080 eV Total energy + Delta-G solvation = -3294.109600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.07033 -40.16408 -39.90167 -38.26987 -36.67504 -33.83668 -32.66307 -31.70702 -28.82229 -28.36979 -27.73435 -26.80580 -24.93211 -23.48455 -21.45397 -19.89405 -19.00336 -18.63901 -18.20352 -17.51412 -17.14644 -16.87725 -16.59214 -16.09029 -16.00804 -15.57259 -15.31975 -14.73430 -14.54268 -14.20010 -13.79969 -13.62571 -13.33348 -13.20935 -12.76423 -12.69518 -12.56716 -12.42013 -12.34024 -12.13161 -12.09128 -11.13071 -11.04407 -10.42030 -9.91168 -9.74311 -9.56238 -8.37693 -5.99873 -0.00568 0.24864 1.35559 1.39074 1.53824 1.74815 1.91553 2.27092 2.52491 2.64895 3.03070 3.03934 3.41948 3.71685 3.93941 4.09074 4.29898 4.35247 4.39424 4.40356 4.43092 4.51345 4.63228 4.69244 4.77108 4.90266 4.96036 5.19179 5.22844 5.41793 6.02872 6.20316 6.25914 6.44622 6.79711 7.11075 7.39505 7.98602 8.66745 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.007524 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.655188 B = 3720.558247 C = 4569.260775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.333 6.333 3 C 0.214 3.786 4 C -0.283 4.283 5 C 0.184 3.816 6 N -0.563 5.563 7 C 0.366 3.634 8 O -0.328 6.328 9 C 0.038 3.962 10 C -0.247 4.247 11 C 0.505 3.495 12 O -0.637 6.637 13 N -0.443 5.443 14 C 0.141 3.859 15 C -0.350 4.350 16 H 0.071 0.929 17 C -0.001 4.001 18 N -0.893 5.893 19 Si 0.995 3.005 20 H -0.274 1.274 21 H -0.262 1.262 22 H -0.269 1.269 23 H 0.081 0.919 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.191 0.809 27 H 0.219 0.781 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.990 10.354 -0.191 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.244 6.244 3 C 0.159 3.841 4 C -0.304 4.304 5 C 0.029 3.971 6 N -0.292 5.292 7 C 0.188 3.812 8 O -0.234 6.234 9 C -0.056 4.056 10 C -0.254 4.254 11 C 0.294 3.706 12 O -0.526 6.526 13 N -0.159 5.159 14 C -0.003 4.003 15 C -0.478 4.478 16 H 0.089 0.911 17 C -0.203 4.203 18 N -0.531 5.531 19 Si 0.817 3.183 20 H -0.200 1.200 21 H -0.186 1.186 22 H -0.194 1.194 23 H 0.100 0.900 24 H 0.132 0.868 25 H 0.103 0.897 26 H 0.208 0.792 27 H 0.235 0.765 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.014 10.479 -0.448 15.948 hybrid contribution 0.236 -1.391 0.067 1.412 sum -11.777 9.088 -0.381 14.881 Atomic orbital electron populations 1.23590 0.74534 1.06112 1.03734 1.86120 1.25181 1.26474 1.86587 1.19186 0.89207 0.86591 0.89127 1.22363 1.03324 0.90620 1.14067 1.23156 0.87587 0.99072 0.87265 1.67496 1.09354 1.28792 1.23539 1.19477 0.84528 0.87858 0.89330 1.86313 1.16413 1.33996 1.86665 1.23129 0.99474 0.79861 1.03114 1.19198 0.92902 0.93246 1.20021 1.17865 0.84379 0.84625 0.83766 1.90524 1.62844 1.66304 1.32913 1.43648 1.43448 1.23948 1.04853 1.21169 0.95881 0.97569 0.85647 1.19630 1.24666 1.00571 1.02915 0.91086 1.26186 0.95662 1.03262 0.95219 1.70103 1.37667 1.34143 1.11159 0.84946 0.78270 0.76931 0.78180 1.19956 1.18567 1.19382 0.90003 0.86782 0.89730 0.79200 0.76506 0.91169 0.91219 0.87243 0.94440 0.93822 0.91959 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.84 113.37 1.12 1.38 16 2 O -0.33 -12.03 10.03 -88.15 -0.88 -12.92 16 3 C 0.21 7.81 6.32 23.09 0.15 7.96 16 4 C -0.28 -6.76 9.09 22.42 0.20 -6.56 16 5 C 0.18 4.22 11.15 84.58 0.94 5.16 16 6 N -0.56 -18.14 9.20 -308.21 -2.84 -20.98 16 7 C 0.37 15.41 7.51 85.16 0.64 16.05 16 8 O -0.33 -14.56 9.94 -87.27 -0.87 -15.43 16 9 C 0.04 1.17 10.38 113.37 1.18 2.35 16 10 C -0.25 -11.52 3.97 -19.83 -0.08 -11.60 16 11 C 0.50 29.66 6.23 86.58 0.54 30.20 16 12 O -0.64 -42.71 16.79 -4.20 -0.07 -42.78 16 13 N -0.44 -26.22 3.01 -662.95 -2.00 -28.21 16 14 C 0.14 7.24 8.50 127.77 1.09 8.32 16 15 C -0.35 -21.85 9.28 84.08 0.78 -21.07 16 16 H 0.07 4.71 7.41 -2.91 -0.02 4.69 16 17 C 0.00 -0.07 5.00 84.94 0.42 0.36 16 18 N -0.89 -50.22 10.82 21.67 0.23 -49.99 16 19 Si 0.99 44.48 29.58 68.60 2.03 46.51 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H 0.08 1.21 7.71 -2.39 -0.02 1.19 16 24 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 25 H 0.08 1.21 7.71 -2.39 -0.02 1.20 16 26 H 0.19 2.56 6.45 -2.91 -0.02 2.54 16 27 H 0.22 2.43 8.06 -2.91 -0.02 2.41 16 28 H 0.07 1.90 8.10 -2.39 -0.02 1.89 16 29 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 30 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.04 1.99 7.76 -2.39 -0.02 1.98 16 32 H 0.04 1.97 6.62 -2.39 -0.02 1.96 16 33 H 0.06 3.25 6.84 -2.39 -0.02 3.23 16 34 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -86.31 297.31 3.71 -82.60 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.12 Total: 8.64 kcal Atomic # 6 Polarization: 25.58 SS G_CDS: 6.98 Total: 32.56 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.60 Total: -99.18 kcal Atomic # 8 Polarization: -69.31 SS G_CDS: -1.82 Total: -71.13 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -86.31 3.71 -82.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024067.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.845 kcal (2) G-P(sol) polarization free energy of solvation -86.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds