Wall clock time and date at job start Mon Mar 30 2020 04:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46903 * 2 1 4 4 C 1.46501 * 119.99880 * 94.00718 * 3 2 1 5 5 C 1.50704 * 109.46915 * 90.00325 * 4 3 2 6 6 C 1.41375 * 126.58433 * 90.00102 * 5 4 3 7 7 C 1.34509 * 106.84482 * 180.25876 * 6 5 4 8 8 O 1.34306 * 108.41930 * 359.63259 * 7 6 5 9 9 C 1.34312 * 109.47418 * 0.37693 * 8 7 6 10 10 C 1.34774 * 120.00108 * 274.00664 * 3 2 1 11 11 O 1.21445 * 120.00258 * 185.38445 * 10 3 2 12 12 C 1.48834 * 120.00051 * 5.38594 * 10 3 2 13 13 O 1.21502 * 119.99908 * 5.55896 * 12 10 3 14 14 N 1.34776 * 120.00232 * 185.55974 * 12 10 3 15 15 C 1.36118 * 120.00365 * 179.97438 * 14 12 10 16 16 H 1.08000 * 119.99705 * 0.02562 * 15 14 12 17 17 C 1.39580 * 120.00287 * 180.02562 * 15 14 12 18 18 N 1.31014 * 120.00051 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00109 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47323 * 89.99875 * 19 17 15 21 21 H 1.48498 * 109.47138 * 210.00102 * 19 17 15 22 22 H 1.48501 * 109.47085 * 329.99765 * 19 17 15 23 23 H 1.08993 * 109.47128 * 299.99454 * 1 2 3 24 24 H 1.08994 * 109.47208 * 60.00063 * 1 2 3 25 25 H 1.09004 * 109.46701 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47036 * 240.00422 * 2 1 3 27 27 H 1.08994 * 109.47208 * 119.99937 * 2 1 3 28 28 H 1.08990 * 109.47121 * 330.00043 * 4 3 2 29 29 H 1.09001 * 109.46922 * 209.99908 * 4 3 2 30 30 H 1.08006 * 126.57706 * 359.97438 * 6 5 4 31 31 H 1.07997 * 125.79323 * 179.77110 * 7 6 5 32 32 H 1.08001 * 125.78821 * 179.79105 * 9 8 7 33 33 H 0.97007 * 119.99627 * 0.02562 * 14 12 10 34 34 H 0.97003 * 120.00441 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3460 2.0422 1.2656 5 6 3.7948 1.7965 1.6003 6 6 4.8950 2.5993 1.2212 7 6 5.9965 2.0136 1.7240 8 8 5.6231 0.9091 2.3907 9 6 4.2892 0.7708 2.3164 10 6 2.1660 2.0437 -1.1643 11 8 2.6621 3.1522 -1.1736 12 6 1.7211 1.4170 -2.4388 13 8 1.1339 0.3535 -2.4203 14 7 1.9697 2.0291 -3.6136 15 6 1.5633 1.4556 -4.7793 16 1 1.0413 0.5103 -4.7627 17 6 1.8211 2.0893 -5.9959 18 7 2.4548 3.2358 -6.0160 19 14 1.2627 1.3026 -7.5956 20 1 -0.1072 1.7711 -7.9259 21 1 2.1937 1.6861 -8.6871 22 1 1.2579 -0.1748 -7.4454 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.7165 1.6400 2.0593 29 1 2.1716 3.1141 1.1715 30 1 4.8586 3.5063 0.6358 31 1 7.0092 2.3719 1.6126 32 1 3.7115 -0.0282 2.7572 33 1 2.4389 2.8780 -3.6284 34 1 2.6337 3.6764 -6.8615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688549957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:47 Heat of formation + Delta-G solvation = -45.086089 kcal Electronic energy + Delta-G solvation = -20213.110920 eV Core-core repulsion = 16920.504634 eV Total energy + Delta-G solvation = -3292.606286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.44545 -39.71217 -37.26899 -35.90482 -34.18884 -33.15162 -31.38206 -30.36530 -29.37859 -26.88104 -25.41513 -23.31427 -21.99508 -21.35327 -20.35567 -18.79395 -18.07580 -17.29456 -16.66080 -16.09479 -15.73013 -15.07020 -15.03510 -14.52910 -14.23017 -13.97469 -13.50745 -13.15773 -12.99711 -12.68715 -12.61541 -12.16041 -12.01708 -11.75480 -11.59107 -11.26533 -11.21817 -10.56273 -10.50661 -10.40336 -10.13018 -9.67678 -9.61381 -8.55859 -8.34214 -8.17444 -8.00519 -6.66023 -3.98162 1.81707 2.47096 2.61097 3.14773 3.16511 3.20746 3.22253 3.52580 4.05591 4.27788 4.76329 4.87705 5.01298 5.13028 5.19323 5.42629 5.49691 5.72922 5.81301 5.92034 5.94643 6.01039 6.16410 6.17691 6.24464 6.52847 6.60691 6.79830 7.02733 7.18248 7.31850 7.68925 7.81196 8.33428 8.62505 8.97515 9.33764 9.86858 10.48952 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.005034 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.611007 B = 5561.260905 C = 6173.070946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.112 3.888 3 N -0.593 5.593 4 C 0.183 3.817 5 C -0.191 4.191 6 C -0.186 4.186 7 C -0.054 4.054 8 O -0.181 6.181 9 C -0.035 4.035 10 C 0.514 3.486 11 O -0.544 6.544 12 C 0.394 3.606 13 O -0.585 6.585 14 N -0.500 5.500 15 C -0.305 4.305 16 H 0.112 0.888 17 C 0.031 3.969 18 N -0.870 5.870 19 Si 0.938 3.062 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.037 0.963 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.108 0.892 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.200 0.800 32 H 0.199 0.801 33 H 0.404 0.596 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 -3.121 13.526 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.010 4.010 3 N -0.327 5.327 4 C 0.060 3.940 5 C -0.193 4.193 6 C -0.205 4.205 7 C -0.121 4.121 8 O -0.077 6.077 9 C -0.104 4.104 10 C 0.301 3.699 11 O -0.421 6.421 12 C 0.179 3.821 13 O -0.474 6.474 14 N -0.135 5.135 15 C -0.435 4.435 16 H 0.130 0.870 17 C -0.176 4.176 18 N -0.508 5.508 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.189 1.189 23 H 0.056 0.944 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.126 0.874 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.169 0.831 31 H 0.217 0.783 32 H 0.216 0.784 33 H 0.239 0.761 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.471 -3.265 13.517 14.123 hybrid contribution -0.031 0.358 -0.881 0.952 sum 2.440 -2.908 12.635 13.193 Atomic orbital electron populations 1.22102 0.95877 1.01615 1.01874 1.21788 0.94896 0.81322 1.02957 1.47801 1.65064 1.14954 1.04866 1.19660 0.89254 0.99406 0.85632 1.20905 0.97711 0.97492 1.03225 1.21871 0.91656 1.02945 1.04056 1.23979 1.00201 0.87985 0.99972 1.84035 1.23721 1.40226 1.59726 1.23833 0.80906 1.01241 1.04431 1.20752 0.78235 0.85336 0.85614 1.90661 1.43750 1.20510 1.87153 1.18941 0.90357 0.88601 0.84208 1.90518 1.47733 1.23205 1.85933 1.41574 1.46185 1.21289 1.04402 1.19856 1.34721 1.06658 0.82308 0.86987 1.25570 0.96082 0.95614 1.00329 1.69484 1.37358 1.15126 1.28864 0.85739 0.78535 0.79689 0.79687 1.19936 1.20574 1.18936 0.94426 0.90556 0.92455 0.87440 0.92722 0.89965 0.89233 0.83148 0.78336 0.78430 0.76120 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.66 37.16 0.36 -2.04 16 2 C 0.11 1.79 5.68 -4.04 -0.02 1.77 16 3 N -0.59 -10.43 2.46 -175.80 -0.43 -10.86 16 4 C 0.18 2.65 5.86 -5.19 -0.03 2.62 16 5 C -0.19 -2.72 5.75 -104.74 -0.60 -3.32 16 6 C -0.19 -2.74 10.87 -39.71 -0.43 -3.17 16 7 C -0.05 -0.68 12.09 29.41 0.36 -0.32 16 8 O -0.18 -2.36 10.65 5.68 0.06 -2.30 16 9 C -0.04 -0.43 12.01 29.42 0.35 -0.08 16 10 C 0.51 11.25 7.68 -11.88 -0.09 11.16 16 11 O -0.54 -12.70 16.12 5.41 0.09 -12.61 16 12 C 0.39 9.72 7.58 -11.87 -0.09 9.63 16 13 O -0.59 -14.63 10.95 5.36 0.06 -14.57 16 14 N -0.50 -13.26 5.24 -11.59 -0.06 -13.32 16 15 C -0.30 -8.29 9.67 -15.15 -0.15 -8.44 16 16 H 0.11 3.09 7.15 -52.49 -0.38 2.72 16 17 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 18 N -0.87 -23.32 13.03 55.53 0.72 -22.59 16 19 Si 0.94 20.00 29.56 -169.99 -5.02 14.98 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.08 1.44 6.45 -51.93 -0.34 1.11 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.11 2.03 5.84 -51.93 -0.30 1.73 16 27 H 0.05 0.69 8.04 -51.93 -0.42 0.27 16 28 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.09 1.38 7.50 -51.93 -0.39 0.99 16 30 H 0.15 2.32 8.06 -52.48 -0.42 1.90 16 31 H 0.20 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.40 10.90 7.36 -40.82 -0.30 10.60 16 34 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -30.48 300.86 -4.29 -34.76 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -3.79 Total: 13.47 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -0.44 Total: 8.51 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.23 Total: -46.78 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: 0.21 Total: -29.48 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.48 -4.29 -34.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688549957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.321 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds