Wall clock time and date at job start Mon Mar 30 2020 04:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46903 * 2 1 4 4 C 1.46501 * 119.99880 * 94.00718 * 3 2 1 5 5 C 1.50704 * 109.46915 * 90.00325 * 4 3 2 6 6 C 1.41375 * 126.58433 * 90.00102 * 5 4 3 7 7 C 1.34509 * 106.84482 * 180.25876 * 6 5 4 8 8 O 1.34306 * 108.41930 * 359.63259 * 7 6 5 9 9 C 1.34312 * 109.47418 * 0.37693 * 8 7 6 10 10 C 1.34774 * 120.00108 * 274.00664 * 3 2 1 11 11 O 1.21445 * 120.00258 * 185.38445 * 10 3 2 12 12 C 1.48834 * 120.00051 * 5.38594 * 10 3 2 13 13 O 1.21502 * 119.99908 * 5.55896 * 12 10 3 14 14 N 1.34776 * 120.00232 * 185.55974 * 12 10 3 15 15 C 1.36118 * 120.00365 * 179.97438 * 14 12 10 16 16 H 1.08000 * 119.99705 * 0.02562 * 15 14 12 17 17 C 1.39580 * 120.00287 * 180.02562 * 15 14 12 18 18 N 1.31014 * 120.00051 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00109 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47323 * 89.99875 * 19 17 15 21 21 H 1.48498 * 109.47138 * 210.00102 * 19 17 15 22 22 H 1.48501 * 109.47085 * 329.99765 * 19 17 15 23 23 H 1.08993 * 109.47128 * 299.99454 * 1 2 3 24 24 H 1.08994 * 109.47208 * 60.00063 * 1 2 3 25 25 H 1.09004 * 109.46701 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47036 * 240.00422 * 2 1 3 27 27 H 1.08994 * 109.47208 * 119.99937 * 2 1 3 28 28 H 1.08990 * 109.47121 * 330.00043 * 4 3 2 29 29 H 1.09001 * 109.46922 * 209.99908 * 4 3 2 30 30 H 1.08006 * 126.57706 * 359.97438 * 6 5 4 31 31 H 1.07997 * 125.79323 * 179.77110 * 7 6 5 32 32 H 1.08001 * 125.78821 * 179.79105 * 9 8 7 33 33 H 0.97007 * 119.99627 * 0.02562 * 14 12 10 34 34 H 0.97003 * 120.00441 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3460 2.0422 1.2656 5 6 3.7948 1.7965 1.6003 6 6 4.8950 2.5993 1.2212 7 6 5.9965 2.0136 1.7240 8 8 5.6231 0.9091 2.3907 9 6 4.2892 0.7708 2.3164 10 6 2.1660 2.0437 -1.1643 11 8 2.6621 3.1522 -1.1736 12 6 1.7211 1.4170 -2.4388 13 8 1.1339 0.3535 -2.4203 14 7 1.9697 2.0291 -3.6136 15 6 1.5633 1.4556 -4.7793 16 1 1.0413 0.5103 -4.7627 17 6 1.8211 2.0893 -5.9959 18 7 2.4548 3.2358 -6.0160 19 14 1.2627 1.3026 -7.5956 20 1 -0.1072 1.7711 -7.9259 21 1 2.1937 1.6861 -8.6871 22 1 1.2579 -0.1748 -7.4454 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.7165 1.6400 2.0593 29 1 2.1716 3.1141 1.1715 30 1 4.8586 3.5063 0.6358 31 1 7.0092 2.3719 1.6126 32 1 3.7115 -0.0282 2.7572 33 1 2.4389 2.8780 -3.6284 34 1 2.6337 3.6764 -6.8615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688549957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:47 Heat of formation + Delta-G solvation = -66.029056 kcal Electronic energy + Delta-G solvation = -20214.019075 eV Core-core repulsion = 16920.504634 eV Total energy + Delta-G solvation = -3293.514441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.45000 -41.43727 -39.12084 -37.49603 -36.04144 -34.34593 -33.37843 -31.55628 -30.54873 -28.39174 -27.14493 -24.83581 -23.50854 -22.39425 -21.56013 -20.55947 -19.86299 -18.41809 -18.36330 -17.60723 -17.02648 -16.77124 -16.55644 -15.94966 -15.70110 -15.59726 -15.05611 -14.71511 -14.32843 -14.14072 -13.70998 -13.64564 -13.62161 -13.25725 -12.97546 -12.85930 -12.52259 -12.40179 -12.11039 -11.99549 -11.85942 -11.43112 -10.79270 -10.20755 -9.94116 -9.77393 -9.44638 -8.62345 -6.06465 0.66351 0.84338 1.38912 1.45291 1.47254 1.57309 2.05929 2.29170 2.32576 2.41766 3.14952 3.19038 3.85741 3.91755 4.03507 4.17158 4.21522 4.45058 4.55960 4.68473 4.71531 4.83182 4.93483 5.12359 5.19442 5.28299 5.29119 5.47342 5.54105 5.66157 5.74677 6.13014 6.21063 6.38160 6.82364 7.03415 7.33699 7.85636 8.53917 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.005034 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.611007 B = 5561.260905 C = 6173.070946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.108 3.892 3 N -0.577 5.577 4 C 0.183 3.817 5 C -0.220 4.220 6 C -0.224 4.224 7 C -0.044 4.044 8 O -0.184 6.184 9 C -0.017 4.017 10 C 0.512 3.488 11 O -0.567 6.567 12 C 0.393 3.607 13 O -0.589 6.589 14 N -0.519 5.519 15 C -0.340 4.340 16 H 0.100 0.900 17 C -0.008 4.008 18 N -0.902 5.902 19 Si 1.009 2.991 20 H -0.266 1.266 21 H -0.269 1.269 22 H -0.263 1.263 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.127 0.873 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.231 0.769 32 H 0.240 0.760 33 H 0.397 0.603 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -4.769 15.226 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 N -0.310 5.310 4 C 0.062 3.938 5 C -0.222 4.222 6 C -0.243 4.243 7 C -0.111 4.111 8 O -0.080 6.080 9 C -0.085 4.085 10 C 0.297 3.703 11 O -0.446 6.446 12 C 0.178 3.822 13 O -0.478 6.478 14 N -0.154 5.154 15 C -0.470 4.470 16 H 0.118 0.882 17 C -0.211 4.211 18 N -0.541 5.541 19 Si 0.830 3.170 20 H -0.191 1.191 21 H -0.194 1.194 22 H -0.187 1.187 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.123 0.877 28 H 0.145 0.855 29 H 0.091 0.909 30 H 0.148 0.852 31 H 0.247 0.753 32 H 0.256 0.744 33 H 0.231 0.769 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.406 -4.940 15.263 16.222 hybrid contribution 0.003 0.824 -1.216 1.469 sum 2.409 -4.116 14.047 14.835 Atomic orbital electron populations 1.22010 0.95212 1.02593 1.00998 1.21899 0.95399 0.80198 1.03786 1.47907 1.63071 1.15366 1.04619 1.19908 0.90616 0.98604 0.84720 1.20933 0.97265 0.98851 1.05169 1.21951 0.93392 1.03360 1.05615 1.24491 1.00986 0.87163 0.98419 1.84072 1.24263 1.40116 1.59528 1.24518 0.80585 1.00874 1.02513 1.20290 0.78720 0.85266 0.86063 1.90651 1.45044 1.21399 1.87507 1.19613 0.89212 0.88340 0.85035 1.90511 1.47375 1.23332 1.86533 1.41674 1.47297 1.21361 1.05059 1.19938 1.36597 1.07029 0.83457 0.88211 1.26506 0.95491 0.95877 1.03239 1.69564 1.38141 1.16265 1.30092 0.84712 0.78408 0.78667 0.75234 1.19096 1.19392 1.18683 0.91723 0.94884 0.90602 0.90756 0.87717 0.85499 0.90882 0.85190 0.75264 0.74364 0.76918 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 9.66 71.98 0.70 -3.57 16 2 C 0.11 3.20 5.68 86.38 0.49 3.69 16 3 N -0.58 -19.59 2.46 -828.44 -2.04 -21.63 16 4 C 0.18 4.88 5.86 85.63 0.50 5.38 16 5 C -0.22 -5.81 5.75 -19.94 -0.11 -5.93 16 6 C -0.22 -6.50 10.87 22.19 0.24 -6.26 16 7 C -0.04 -1.02 12.09 66.97 0.81 -0.21 16 8 O -0.18 -4.22 10.65 -2.59 -0.03 -4.25 16 9 C -0.02 -0.34 12.01 66.97 0.80 0.46 16 10 C 0.51 22.85 7.68 87.08 0.67 23.52 16 11 O -0.57 -27.43 16.12 -3.54 -0.06 -27.49 16 12 C 0.39 20.08 7.58 87.08 0.66 20.74 16 13 O -0.59 -30.26 10.95 -3.72 -0.04 -30.30 16 14 N -0.52 -28.83 5.24 -308.88 -1.62 -30.45 16 15 C -0.34 -19.21 9.67 84.35 0.82 -18.40 16 16 H 0.10 5.73 7.15 -2.91 -0.02 5.71 16 17 C -0.01 -0.41 5.51 85.14 0.47 0.06 16 18 N -0.90 -49.52 13.03 21.76 0.28 -49.23 16 19 Si 1.01 41.29 29.56 68.60 2.03 43.31 16 20 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.03 1.22 6.45 -2.39 -0.02 1.21 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 2.74 5.84 -2.39 -0.01 2.73 16 27 H 0.10 2.10 8.04 -2.39 -0.02 2.08 16 28 H 0.13 2.26 8.07 -2.39 -0.02 2.24 16 29 H 0.07 2.22 7.50 -2.39 -0.02 2.20 16 30 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 31 H 0.23 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.24 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.40 22.63 7.36 -92.70 -0.68 21.95 16 34 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 Total: -1.00 -69.52 300.86 5.02 -64.50 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.45 Total: 36.05 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 6.04 Total: 19.49 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -3.38 Total: -101.31 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -0.13 Total: -62.05 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -69.52 5.02 -64.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688549957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.527 kcal (2) G-P(sol) polarization free energy of solvation -69.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds