Wall clock time and date at job start Mon Mar 30 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00262 * 2 1 4 4 C 1.50704 * 109.46827 * 270.00183 * 3 2 1 5 5 C 1.35309 * 126.12983 * 95.02714 * 4 3 2 6 6 C 1.39872 * 107.92306 * 180.23912 * 5 4 3 7 7 N 1.30836 * 108.19923 * 359.55065 * 6 5 4 8 8 N 1.34950 * 126.12311 * 274.99705 * 4 3 2 9 9 C 1.46500 * 126.03918 * 359.97438 * 8 4 3 10 10 C 1.34775 * 119.99758 * 179.97438 * 2 1 3 11 11 O 1.21437 * 119.99999 * 176.87412 * 10 2 1 12 12 C 1.48832 * 120.00117 * 356.87475 * 10 2 1 13 13 O 1.21499 * 119.99792 * 5.93727 * 12 10 2 14 14 N 1.34778 * 119.99940 * 185.93865 * 12 10 2 15 15 C 1.36119 * 119.99846 * 179.97438 * 14 12 10 16 16 H 1.07999 * 119.99972 * 0.02562 * 15 14 12 17 17 C 1.39583 * 119.99826 * 179.97438 * 15 14 12 18 18 N 1.31009 * 120.00200 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99856 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47399 * 60.00102 * 19 17 15 21 21 H 1.48498 * 109.47328 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47352 * 300.00380 * 19 17 15 23 23 H 1.09004 * 109.47400 * 95.95080 * 1 2 3 24 24 H 1.08992 * 109.47641 * 215.96003 * 1 2 3 25 25 H 1.09003 * 109.46855 * 335.95768 * 1 2 3 26 26 H 1.08997 * 109.47545 * 149.99894 * 3 2 1 27 27 H 1.09001 * 109.47185 * 29.99867 * 3 2 1 28 28 H 1.08003 * 126.03920 * 359.97032 * 5 4 3 29 29 H 1.07995 * 125.90050 * 179.73109 * 6 5 4 30 30 H 1.09007 * 109.46482 * 89.99922 * 9 8 4 31 31 H 1.09001 * 109.47295 * 209.99960 * 9 8 4 32 32 H 1.09005 * 109.47302 * 330.00544 * 9 8 4 33 33 H 0.96996 * 119.99631 * 359.97438 * 14 12 10 34 34 H 0.97000 * 120.00086 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 1.6840 2.5566 -2.1411 6 6 2.2613 2.6868 -3.4085 7 7 3.3394 1.9465 -3.4444 8 7 3.4769 1.3128 -2.2026 9 6 4.5482 0.3898 -1.8199 10 6 2.1388 -1.1672 0.0005 11 8 3.3518 -1.1681 -0.0568 12 6 1.3963 -2.4551 0.0714 13 8 0.1824 -2.4601 0.0199 14 7 2.0704 -3.6159 0.1926 15 6 1.3913 -4.7937 0.2580 16 1 0.3123 -4.7982 0.2122 17 6 2.0895 -5.9959 0.3830 18 7 3.3984 -5.9906 0.4380 19 14 1.1576 -7.6123 0.4719 20 1 0.3558 -7.7902 -0.7653 21 1 2.1225 -8.7335 0.6025 22 1 0.2534 -7.5983 1.6499 23 1 -0.3634 -0.1065 -1.0221 24 1 -0.3634 -0.8317 0.6034 25 1 -0.3633 0.9386 0.4187 26 1 3.1499 1.1384 0.5138 27 1 1.6085 2.0284 0.5138 28 1 0.7841 3.0464 -1.7994 29 1 1.8840 3.2958 -4.2166 30 1 4.2538 -0.6305 -2.0659 31 1 5.4590 0.6457 -2.3613 32 1 4.7289 0.4673 -0.7477 33 1 3.0395 -3.6118 0.2334 34 1 3.8836 -6.8259 0.5253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689495521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:23 Heat of formation + Delta-G solvation = 24.660832 kcal Electronic energy + Delta-G solvation = -20326.593254 eV Core-core repulsion = 17069.304172 eV Total energy + Delta-G solvation = -3257.289082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -41.16740 -39.67124 -37.35276 -35.62198 -34.15750 -33.00791 -31.53778 -30.91934 -27.21143 -26.59443 -26.36393 -25.20652 -22.29608 -21.01420 -19.88465 -18.99660 -18.16231 -16.78828 -16.57083 -16.26139 -15.48469 -14.99008 -14.94869 -14.34862 -14.10159 -14.03746 -13.49686 -13.32448 -12.95090 -12.70123 -12.40235 -12.26935 -12.06878 -11.99381 -11.84057 -11.62109 -11.21677 -10.60884 -10.53458 -10.47192 -10.28735 -9.76717 -9.23995 -8.55461 -8.44137 -8.29234 -8.03220 -6.74550 -4.06539 1.88314 2.31498 2.72870 2.85647 3.11704 3.12541 3.14832 3.37655 3.99064 4.14398 4.66845 4.71228 4.77822 5.05885 5.10630 5.38992 5.42129 5.53574 5.59806 5.74506 5.83227 5.89300 5.98846 6.11231 6.19375 6.46136 6.76912 6.78420 7.13902 7.23964 7.49630 7.69444 7.85287 8.21174 8.46535 8.87743 9.23104 9.76781 10.39923 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.004851 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.856216 B = 5770.669187 C = 6172.202836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.594 5.594 3 C 0.175 3.825 4 C 0.070 3.930 5 C -0.268 4.268 6 C 0.037 3.963 7 N -0.301 5.301 8 N -0.353 5.353 9 C 0.106 3.894 10 C 0.514 3.486 11 O -0.548 6.548 12 C 0.392 3.608 13 O -0.588 6.588 14 N -0.495 5.495 15 C -0.306 4.306 16 H 0.113 0.887 17 C 0.033 3.967 18 N -0.867 5.867 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 H 0.051 0.949 24 H 0.117 0.883 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.145 0.855 29 H 0.180 0.820 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.404 0.596 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 12.704 -0.620 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.328 5.328 3 C 0.050 3.950 4 C -0.061 4.061 5 C -0.299 4.299 6 C -0.147 4.147 7 N -0.124 5.124 8 N -0.136 5.136 9 C -0.035 4.035 10 C 0.301 3.699 11 O -0.426 6.426 12 C 0.177 3.823 13 O -0.478 6.478 14 N -0.129 5.129 15 C -0.437 4.437 16 H 0.131 0.869 17 C -0.175 4.175 18 N -0.505 5.505 19 Si 0.765 3.235 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 H 0.070 0.930 24 H 0.135 0.865 25 H 0.072 0.928 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.162 0.838 29 H 0.197 0.803 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.239 0.761 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.019 12.035 -1.323 12.108 hybrid contribution -0.521 -0.420 0.356 0.758 sum -0.502 11.615 -0.967 11.666 Atomic orbital electron populations 1.22377 0.77381 1.03436 1.03414 1.47638 1.08234 1.04005 1.72923 1.19992 0.99132 0.86352 0.89487 1.21554 0.90761 0.97877 0.95865 1.21200 1.04886 1.08578 0.95211 1.23747 0.93858 0.99164 0.97978 1.77325 1.20993 1.13050 1.01005 1.48603 1.20727 1.35169 1.09058 1.22061 0.87438 0.92024 1.02003 1.20803 0.87366 0.85752 0.75933 1.90621 1.14149 1.87734 1.50109 1.18825 0.87857 0.84198 0.91429 1.90473 1.12945 1.85502 1.58838 1.41557 1.10504 1.04529 1.56318 1.19842 0.94088 0.82214 1.47511 0.86949 1.25588 0.95622 1.00510 0.95749 1.69465 1.06591 1.29817 1.44646 0.85775 0.78905 0.79272 0.79552 1.19342 1.20553 1.19312 0.93030 0.86506 0.92846 0.88840 0.87811 0.83761 0.80312 0.89896 0.90435 0.88469 0.76059 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 9.57 59.85 0.57 1.74 16 2 N -0.59 -9.92 2.86 -183.70 -0.52 -10.44 16 3 C 0.18 2.35 5.61 -5.19 -0.03 2.32 16 4 C 0.07 1.03 6.51 -82.26 -0.54 0.50 16 5 C -0.27 -3.58 10.72 -40.01 -0.43 -4.01 16 6 C 0.04 0.51 12.03 -17.36 -0.21 0.30 16 7 N -0.30 -4.98 12.58 30.62 0.39 -4.59 16 8 N -0.35 -5.76 4.01 -63.88 -0.26 -6.02 16 9 C 0.11 1.60 9.63 59.85 0.58 2.17 16 10 C 0.51 10.52 7.71 -11.88 -0.09 10.42 16 11 O -0.55 -11.27 11.98 5.42 0.06 -11.20 16 12 C 0.39 9.39 7.70 -11.87 -0.09 9.30 16 13 O -0.59 -14.76 12.70 5.37 0.07 -14.69 16 14 N -0.50 -12.68 5.24 -11.59 -0.06 -12.74 16 15 C -0.31 -8.13 9.67 -15.15 -0.15 -8.28 16 16 H 0.11 3.05 7.15 -52.49 -0.38 2.67 16 17 C 0.03 0.82 5.51 -17.40 -0.10 0.73 16 18 N -0.87 -22.54 13.03 55.53 0.72 -21.82 16 19 Si 0.94 19.57 29.56 -169.99 -5.02 14.55 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.12 2.11 5.38 -51.94 -0.28 1.83 16 25 H 0.05 0.61 7.83 -51.93 -0.41 0.20 16 26 H 0.09 1.25 6.57 -51.93 -0.34 0.91 16 27 H 0.10 1.04 7.85 -51.93 -0.41 0.63 16 28 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 29 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.08 1.44 7.13 -51.93 -0.37 1.07 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.40 6.06 -51.93 -0.31 1.09 16 33 H 0.40 10.38 7.36 -40.82 -0.30 10.08 16 34 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 LS Contribution 293.96 15.07 4.43 4.43 Total: -1.00 -30.17 293.96 -4.29 -34.47 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -3.62 Total: 12.86 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -0.48 Total: 15.20 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.27 Total: -55.61 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: 0.13 Total: -25.89 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.17 -4.29 -34.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689495521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.126 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds