Wall clock time and date at job start Mon Mar 30 2020 04:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 8 8 N 1.46493 * 109.47019 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00145 * 180.02562 * 8 7 6 10 10 O 1.21443 * 120.00250 * 359.97438 * 9 8 7 11 11 C 1.48836 * 120.00438 * 179.97438 * 9 8 7 12 12 O 1.21506 * 119.99714 * 0.02562 * 11 9 8 13 13 N 1.34771 * 120.00421 * 179.97438 * 11 9 8 14 14 C 1.36119 * 120.00092 * 179.97438 * 13 11 9 15 15 H 1.07992 * 120.00261 * 0.02562 * 14 13 11 16 16 C 1.39591 * 119.99832 * 180.02562 * 14 13 11 17 17 N 1.31016 * 120.00109 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00016 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47150 * 59.99609 * 18 16 14 20 20 H 1.48500 * 109.47431 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46912 * 299.99930 * 18 16 14 22 22 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 23 23 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 24 24 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 25 25 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 26 26 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 27 27 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 29 29 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 30 30 H 1.09003 * 109.46984 * 300.00168 * 7 6 5 31 31 H 1.08999 * 109.46938 * 60.00063 * 7 6 5 32 32 H 0.97007 * 120.00204 * 359.97438 * 8 7 6 33 33 H 0.97007 * 119.99696 * 0.02562 * 13 11 9 34 34 H 0.96998 * 119.99842 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1667 -1.9479 1.4614 8 7 6.3223 -2.8482 1.4685 9 6 6.8486 -3.2599 2.6389 10 8 6.3652 -2.8842 3.6877 11 6 8.0223 -4.1751 2.6462 12 8 8.5063 -4.5507 1.5968 13 7 8.5489 -4.5864 3.8165 14 6 9.6221 -5.4238 3.8231 15 1 10.0518 -5.7583 2.8905 16 6 10.1672 -5.8502 5.0354 17 7 9.6456 -5.4449 6.1668 18 14 11.6402 -6.9988 5.0445 19 1 12.7792 -6.3486 4.3479 20 1 12.0249 -7.2995 6.4469 21 1 11.2881 -8.2609 4.3458 22 8 2.2923 -1.0895 0.0044 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.9666 2.1203 -0.0045 27 1 4.5212 1.2433 0.0076 28 1 4.5127 -2.5646 -0.4964 29 1 5.6061 -1.1601 -0.4949 30 1 5.4244 -1.0212 1.9742 31 1 4.3311 -2.4258 1.9727 32 1 6.7082 -3.1487 0.6308 33 1 8.1627 -4.2863 4.6543 34 1 10.0246 -5.7409 7.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689780503.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:41 Heat of formation + Delta-G solvation = -68.549461 kcal Electronic energy + Delta-G solvation = -18834.200908 eV Core-core repulsion = 15540.577173 eV Total energy + Delta-G solvation = -3293.623734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.74984 -39.48861 -37.29850 -35.49991 -34.23491 -33.33591 -32.71349 -31.41290 -30.30782 -26.58873 -25.52865 -23.54229 -22.04900 -21.79367 -20.34508 -19.46122 -18.34707 -17.06131 -16.75741 -16.24113 -15.77436 -15.44827 -15.01309 -14.48939 -14.30701 -14.07505 -13.88649 -13.41578 -13.29997 -12.96730 -12.81132 -12.71870 -12.46758 -12.10014 -12.02619 -11.77186 -11.37626 -11.17295 -10.58871 -10.45639 -10.35854 -10.02682 -9.71486 -8.79759 -8.47013 -8.26941 -8.23440 -6.67759 -4.00148 1.51639 2.43142 2.43755 2.67146 3.15545 3.17193 3.18550 3.43902 4.05343 4.27235 4.46170 4.69656 4.81173 4.86712 4.89352 5.08125 5.14634 5.15622 5.18797 5.30658 5.42896 5.64472 5.70574 5.87996 5.90498 6.00840 6.06851 6.37689 6.71359 7.01869 7.30180 7.66252 7.84963 8.31384 8.60396 8.94983 9.30781 9.84072 10.47016 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.058644 B = 0.002888 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.346188 B = 9693.867618 C = 9883.889713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.018 4.018 3 C -0.212 4.212 4 C -0.203 4.203 5 C -0.006 4.006 6 C -0.051 4.051 7 C 0.125 3.875 8 N -0.716 5.716 9 C 0.514 3.486 10 O -0.545 6.545 11 C 0.394 3.606 12 O -0.598 6.598 13 N -0.498 5.498 14 C -0.306 4.306 15 H 0.112 0.888 16 C 0.031 3.969 17 N -0.868 5.868 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.269 1.269 22 O -0.173 6.173 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.411 0.589 33 H 0.405 0.595 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.731 10.287 -10.585 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 C -0.231 4.231 4 C -0.222 4.222 5 C -0.056 4.056 6 C -0.088 4.088 7 C 0.001 3.999 8 N -0.371 5.371 9 C 0.298 3.702 10 O -0.422 6.422 11 C 0.178 3.822 12 O -0.487 6.487 13 N -0.132 5.132 14 C -0.437 4.437 15 H 0.130 0.870 16 C -0.176 4.176 17 N -0.506 5.506 18 Si 0.766 3.234 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.194 1.194 22 O -0.070 6.070 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.164 0.836 27 H 0.167 0.833 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.247 0.753 33 H 0.240 0.760 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.836 9.991 -10.269 19.918 hybrid contribution 0.647 -0.166 0.200 0.697 sum -13.189 9.825 -10.069 19.284 Atomic orbital electron populations 1.20297 0.85189 1.04084 1.03393 1.22443 0.94016 0.84212 1.06109 1.21560 0.92741 0.99346 1.09476 1.21609 0.98324 0.93831 1.08425 1.22078 0.82830 0.94332 1.06402 1.20297 0.91938 0.98728 0.97884 1.21253 0.89009 0.94576 0.95110 1.45604 1.32381 1.49459 1.09668 1.20699 0.84782 0.81377 0.83306 1.90698 1.62503 1.57359 1.31599 1.18915 0.88247 0.89456 0.85573 1.90578 1.64754 1.62442 1.30945 1.41561 1.26102 1.38179 1.07367 1.19841 1.06321 1.22633 0.94912 0.86981 1.25601 0.99536 0.98093 0.94375 1.69478 1.40584 1.42385 0.98195 0.85768 0.80216 0.79949 0.77494 1.19355 1.20588 1.19352 1.83965 1.16368 1.35115 1.71526 0.90202 0.90506 0.89400 0.83554 0.83306 0.89122 0.87889 0.90999 0.91201 0.75343 0.75970 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.42 36.00 0.38 -0.10 16 2 C -0.02 -0.18 7.32 -35.63 -0.26 -0.44 16 3 C -0.21 -2.17 10.81 -39.71 -0.43 -2.60 16 4 C -0.20 -2.22 10.81 -39.70 -0.43 -2.65 16 5 C -0.01 -0.07 6.58 -35.62 -0.23 -0.30 16 6 C -0.05 -0.54 5.86 -27.88 -0.16 -0.70 16 7 C 0.12 1.73 5.66 -4.05 -0.02 1.70 16 8 N -0.72 -12.04 5.55 -60.93 -0.34 -12.38 16 9 C 0.51 11.21 7.87 -11.88 -0.09 11.12 16 10 O -0.54 -12.95 16.47 5.42 0.09 -12.86 16 11 C 0.39 9.93 7.82 -11.88 -0.09 9.83 16 12 O -0.60 -15.94 16.03 5.36 0.09 -15.85 16 13 N -0.50 -13.37 5.25 -11.59 -0.06 -13.43 16 14 C -0.31 -8.45 9.67 -15.14 -0.15 -8.60 16 15 H 0.11 3.14 7.15 -52.49 -0.38 2.76 16 16 C 0.03 0.81 5.51 -17.39 -0.10 0.71 16 17 N -0.87 -23.32 13.03 55.53 0.72 -22.60 16 18 Si 0.94 20.06 29.56 -169.99 -5.02 15.03 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 O -0.17 -2.16 10.65 5.72 0.06 -2.10 16 23 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.41 6.29 7.93 -40.82 -0.32 5.97 16 33 H 0.40 10.96 7.35 -40.82 -0.30 10.66 16 34 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 LS Contribution 310.00 15.07 4.67 4.67 Total: -1.00 -32.22 310.00 -5.32 -37.54 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -3.94 Total: 14.00 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -1.59 Total: 7.98 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.32 Total: -48.41 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: 0.24 Total: -30.81 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.22 -5.32 -37.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689780503.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.007 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds