Wall clock time and date at job start Mon Mar 30 2020 04:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 8 8 N 1.46493 * 109.47019 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00145 * 180.02562 * 8 7 6 10 10 O 1.21443 * 120.00250 * 359.97438 * 9 8 7 11 11 C 1.48836 * 120.00438 * 179.97438 * 9 8 7 12 12 O 1.21506 * 119.99714 * 0.02562 * 11 9 8 13 13 N 1.34771 * 120.00421 * 179.97438 * 11 9 8 14 14 C 1.36119 * 120.00092 * 179.97438 * 13 11 9 15 15 H 1.07992 * 120.00261 * 0.02562 * 14 13 11 16 16 C 1.39591 * 119.99832 * 180.02562 * 14 13 11 17 17 N 1.31016 * 120.00109 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00016 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47150 * 59.99609 * 18 16 14 20 20 H 1.48500 * 109.47431 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46912 * 299.99930 * 18 16 14 22 22 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 23 23 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 24 24 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 25 25 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 26 26 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 27 27 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 29 29 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 30 30 H 1.09003 * 109.46984 * 300.00168 * 7 6 5 31 31 H 1.08999 * 109.46938 * 60.00063 * 7 6 5 32 32 H 0.97007 * 120.00204 * 359.97438 * 8 7 6 33 33 H 0.97007 * 119.99696 * 0.02562 * 13 11 9 34 34 H 0.96998 * 119.99842 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1667 -1.9479 1.4614 8 7 6.3223 -2.8482 1.4685 9 6 6.8486 -3.2599 2.6389 10 8 6.3652 -2.8842 3.6877 11 6 8.0223 -4.1751 2.6462 12 8 8.5063 -4.5507 1.5968 13 7 8.5489 -4.5864 3.8165 14 6 9.6221 -5.4238 3.8231 15 1 10.0518 -5.7583 2.8905 16 6 10.1672 -5.8502 5.0354 17 7 9.6456 -5.4449 6.1668 18 14 11.6402 -6.9988 5.0445 19 1 12.7792 -6.3486 4.3479 20 1 12.0249 -7.2995 6.4469 21 1 11.2881 -8.2609 4.3458 22 8 2.2923 -1.0895 0.0044 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.9666 2.1203 -0.0045 27 1 4.5212 1.2433 0.0076 28 1 4.5127 -2.5646 -0.4964 29 1 5.6061 -1.1601 -0.4949 30 1 5.4244 -1.0212 1.9742 31 1 4.3311 -2.4258 1.9727 32 1 6.7082 -3.1487 0.6308 33 1 8.1627 -4.2863 4.6543 34 1 10.0246 -5.7409 7.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689780503.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:41 Heat of formation + Delta-G solvation = -91.943320 kcal Electronic energy + Delta-G solvation = -18835.215342 eV Core-core repulsion = 15540.577173 eV Total energy + Delta-G solvation = -3294.638168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.55965 -41.29701 -39.19861 -36.95197 -36.15222 -34.13725 -33.81814 -33.38390 -31.22614 -28.13748 -26.95025 -24.88014 -23.39170 -22.68786 -21.42028 -20.95313 -20.36737 -18.83652 -17.89857 -17.32206 -17.13202 -16.88236 -16.70590 -16.00598 -15.72014 -15.70658 -15.11240 -14.67360 -14.46642 -13.95208 -13.81841 -13.74370 -13.66815 -13.46286 -13.11061 -12.95989 -12.77480 -12.59074 -12.36950 -12.27285 -12.11713 -11.65301 -10.83641 -10.30151 -10.27694 -10.25883 -9.23161 -8.66054 -6.11112 0.58450 0.69115 1.41193 1.49687 1.53443 1.61191 1.75696 2.06270 2.30948 2.36424 3.15278 3.25872 3.73797 3.82754 3.90931 4.02774 4.11162 4.13173 4.41372 4.53943 4.71381 4.71997 4.82226 4.88391 4.95671 5.11008 5.22763 5.25163 5.30265 5.64021 5.67291 6.13702 6.21762 6.37613 6.80405 7.00134 7.27182 7.79077 8.49585 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.058644 B = 0.002888 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.346188 B = 9693.867618 C = 9883.889713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.027 4.027 3 C -0.226 4.226 4 C -0.207 4.207 5 C -0.030 4.030 6 C -0.039 4.039 7 C 0.126 3.874 8 N -0.692 5.692 9 C 0.519 3.481 10 O -0.567 6.567 11 C 0.390 3.610 12 O -0.615 6.615 13 N -0.511 5.511 14 C -0.346 4.346 15 H 0.101 0.899 16 C -0.005 4.005 17 N -0.896 5.896 18 Si 1.011 2.989 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.263 1.263 22 O -0.194 6.194 23 H 0.095 0.905 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.168 0.832 27 H 0.163 0.837 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.420 0.580 33 H 0.401 0.599 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.057 10.789 -11.405 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C -0.244 4.244 4 C -0.226 4.226 5 C -0.080 4.080 6 C -0.076 4.076 7 C 0.003 3.997 8 N -0.345 5.345 9 C 0.302 3.698 10 O -0.447 6.447 11 C 0.175 3.825 12 O -0.505 6.505 13 N -0.145 5.145 14 C -0.475 4.475 15 H 0.118 0.882 16 C -0.210 4.210 17 N -0.534 5.534 18 Si 0.831 3.169 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.188 1.188 22 O -0.092 6.092 23 H 0.113 0.887 24 H 0.096 0.904 25 H 0.125 0.875 26 H 0.186 0.814 27 H 0.181 0.819 28 H 0.118 0.882 29 H 0.143 0.857 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.258 0.742 33 H 0.235 0.765 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.185 10.512 -11.127 20.870 hybrid contribution 0.621 -0.223 0.390 0.766 sum -13.565 10.289 -10.738 20.128 Atomic orbital electron populations 1.20487 0.82706 1.05088 1.04689 1.23235 0.95588 0.83831 1.05012 1.21921 0.92494 1.00479 1.09549 1.21951 0.99361 0.93855 1.07442 1.22236 0.82913 0.94838 1.07979 1.20214 0.92479 0.99444 0.95437 1.21412 0.87137 0.93458 0.97711 1.45511 1.32241 1.48357 1.08423 1.20102 0.84086 0.81199 0.84434 1.90691 1.63006 1.58289 1.32670 1.19543 0.88763 0.89234 0.84921 1.90547 1.65540 1.63058 1.31335 1.41664 1.26467 1.38711 1.07621 1.19966 1.07723 1.24577 0.95280 0.88152 1.26570 1.01999 0.98993 0.93416 1.69549 1.41845 1.43128 0.98885 0.84740 0.76331 0.77641 0.78138 1.18757 1.19178 1.18799 1.83953 1.16927 1.36324 1.72019 0.88663 0.90417 0.87457 0.81431 0.81895 0.88187 0.85697 0.91055 0.92181 0.74204 0.76492 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.42 71.23 0.74 -0.06 16 2 C -0.03 -0.52 7.32 24.83 0.18 -0.34 16 3 C -0.23 -4.22 10.81 22.19 0.24 -3.98 16 4 C -0.21 -4.21 10.81 22.19 0.24 -3.97 16 5 C -0.03 -0.66 6.58 24.84 0.16 -0.50 16 6 C -0.04 -0.75 5.86 29.85 0.18 -0.57 16 7 C 0.13 3.35 5.66 86.38 0.49 3.84 16 8 N -0.69 -22.60 5.55 -465.02 -2.58 -25.18 16 9 C 0.52 22.66 7.87 87.08 0.69 23.34 16 10 O -0.57 -27.18 16.47 -3.54 -0.06 -27.23 16 11 C 0.39 19.97 7.82 87.08 0.68 20.65 16 12 O -0.62 -33.01 16.03 -3.74 -0.06 -33.07 16 13 N -0.51 -28.13 5.25 -308.87 -1.62 -29.75 16 14 C -0.35 -19.44 9.67 84.35 0.82 -18.62 16 15 H 0.10 5.75 7.15 -2.91 -0.02 5.73 16 16 C -0.01 -0.29 5.51 85.14 0.47 0.18 16 17 N -0.90 -48.37 13.03 21.77 0.28 -48.09 16 18 Si 1.01 40.64 29.56 68.60 2.03 42.67 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 O -0.19 -4.69 10.65 -2.45 -0.03 -4.72 16 23 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 27 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.42 12.28 7.93 -92.70 -0.74 11.54 16 33 H 0.40 22.36 7.35 -92.70 -0.68 21.68 16 34 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 Total: -1.00 -69.63 310.00 2.58 -67.05 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: -0.27 Total: 38.35 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 4.88 Total: 19.98 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -3.92 Total: -103.02 kcal Atomic # 8 Polarization: -64.88 SS G_CDS: -0.14 Total: -65.02 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -69.63 2.58 -67.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689780503.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.897 kcal (2) G-P(sol) polarization free energy of solvation -69.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds