Wall clock time and date at job start Mon Mar 30 2020 04:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34235 * 116.99604 * 2 1 4 4 O 1.20828 * 120.00147 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99676 * 180.02562 * 3 2 1 6 6 C 1.50699 * 115.55294 * 325.58096 * 5 3 2 7 7 O 1.20756 * 119.99996 * 214.33244 * 6 5 3 8 8 C 1.50702 * 119.99720 * 34.33249 * 6 5 3 9 9 N 1.46503 * 109.46997 * 179.97438 * 8 6 5 10 10 C 1.36936 * 120.00312 * 270.00015 * 9 8 6 11 11 H 1.07994 * 119.99411 * 19.83140 * 10 9 8 12 12 C 1.38805 * 119.99994 * 199.83666 * 10 9 8 13 13 N 1.31615 * 120.00204 * 21.94458 * 12 10 9 14 14 Si 1.86805 * 119.99978 * 201.95100 * 12 10 9 15 15 H 1.48494 * 109.47041 * 89.99418 * 14 12 10 16 16 H 1.48497 * 109.47230 * 209.99988 * 14 12 10 17 17 H 1.48503 * 109.46610 * 329.99714 * 14 12 10 18 18 C 1.46501 * 119.99644 * 90.00168 * 9 8 6 19 19 C 1.47200 * 109.47308 * 83.93610 * 18 9 8 20 20 N 5.40428 * 101.17060 * 138.89039 * 2 1 3 21 21 C 1.52994 * 117.51560 * 111.28669 * 5 3 2 22 22 C 1.52998 * 60.00317 * 107.47762 * 21 5 3 23 23 H 1.09001 * 109.46846 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46680 * 299.99595 * 1 2 3 25 25 H 1.08998 * 109.47161 * 59.99789 * 1 2 3 26 26 H 1.09002 * 109.47274 * 59.99655 * 8 6 5 27 27 H 1.09001 * 109.47320 * 299.99730 * 8 6 5 28 28 H 0.97005 * 120.00517 * 180.02562 * 13 12 10 29 29 H 1.08998 * 109.47313 * 203.93782 * 18 9 8 30 30 H 1.08999 * 109.47309 * 323.93794 * 18 9 8 31 31 H 1.09001 * 117.49917 * 214.96877 * 21 5 3 32 32 H 1.09004 * 117.50378 * 359.97438 * 21 5 3 33 33 H 1.09001 * 117.50137 * 252.50898 * 22 21 5 34 34 H 1.08999 * 117.49861 * 107.48709 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.2745 0.1888 0.7674 7 8 5.3028 0.4342 1.3509 8 6 3.6992 -1.2035 0.8071 9 7 4.5670 -2.0676 1.6113 10 6 5.5909 -2.7546 1.0156 11 1 5.9675 -2.4364 0.0548 12 6 6.1444 -3.8601 1.6467 13 7 5.4550 -4.5104 2.5599 14 14 7.8681 -4.4248 1.1999 15 1 8.8549 -3.7419 2.0745 16 1 7.9723 -5.8940 1.3889 17 1 8.1472 -4.0872 -0.2191 18 6 4.3392 -2.1967 3.0527 19 6 3.3019 -3.2121 3.2966 20 7 2.4990 -3.9947 3.4860 21 6 4.2459 1.8042 -1.2651 22 6 4.2007 2.6673 -0.0026 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 3.6328 -1.5983 -0.2067 27 1 2.7042 -1.1731 1.2511 28 1 5.8419 -5.2827 3.0013 29 1 5.2655 -2.4989 3.5413 30 1 4.0116 -1.2385 3.4560 31 1 5.2052 1.3667 -1.5415 32 1 3.6045 2.0950 -2.0971 33 1 3.5295 3.5262 -0.0039 34 1 5.1302 2.7976 0.5515 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690533355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:04 Heat of formation + Delta-G solvation = -30.046524 kcal Electronic energy + Delta-G solvation = -20458.830173 eV Core-core repulsion = 17166.876051 eV Total energy + Delta-G solvation = -3291.954122 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88878 -39.10343 -37.05796 -36.12326 -35.52053 -34.17273 -31.54976 -29.00818 -27.82153 -26.63279 -24.88512 -22.68603 -22.59634 -21.03521 -19.37031 -17.55959 -17.45569 -16.84604 -16.48249 -15.84310 -15.52416 -15.01897 -14.45878 -14.26568 -13.95167 -13.75057 -13.44978 -13.18993 -12.96238 -12.25307 -12.06882 -11.68271 -11.64152 -11.47276 -11.30738 -11.26026 -10.90995 -10.88696 -10.69964 -10.60083 -10.50178 -10.22418 -10.02256 -9.91319 -9.43407 -8.64713 -7.18452 -5.98269 -3.38438 1.89067 2.34311 2.70763 3.34392 3.42349 3.43314 3.65271 3.92854 4.23643 4.35920 4.48602 4.54768 4.62012 4.76919 5.07724 5.15290 5.22788 5.36588 5.42698 5.44525 5.52069 5.64688 5.73778 5.96481 6.02776 6.10169 6.28257 6.33487 6.59771 6.97646 7.62247 7.66030 7.96611 8.15243 8.91652 9.16950 9.57275 10.01105 11.10313 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.006708 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.347161 B = 4172.815362 C = 5066.308933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.341 6.341 3 C 0.509 3.491 4 O -0.508 6.508 5 C -0.210 4.210 6 C 0.365 3.635 7 O -0.422 6.422 8 C 0.109 3.891 9 N -0.566 5.566 10 C -0.264 4.264 11 H 0.078 0.922 12 C 0.009 3.991 13 N -0.897 5.897 14 Si 0.909 3.091 15 H -0.284 1.284 16 H -0.292 1.292 17 H -0.279 1.279 18 C 0.260 3.740 19 C 0.250 3.750 20 N -0.505 5.505 21 C -0.121 4.121 22 C -0.123 4.123 23 H 0.105 0.895 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.260 0.740 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 12.448 -6.249 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.257 6.257 3 C 0.352 3.648 4 O -0.397 6.397 5 C -0.213 4.213 6 C 0.234 3.766 7 O -0.292 6.292 8 C -0.019 4.019 9 N -0.285 5.285 10 C -0.393 4.393 11 H 0.095 0.905 12 C -0.191 4.191 13 N -0.540 5.540 14 Si 0.738 3.262 15 H -0.211 1.211 16 H -0.219 1.219 17 H -0.204 1.204 18 C 0.130 3.870 19 C -0.069 4.069 20 N -0.186 5.186 21 C -0.158 4.158 22 C -0.159 4.159 23 H 0.123 0.877 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.623 11.512 -5.556 13.965 hybrid contribution 0.871 -0.197 -0.397 0.977 sum -4.752 11.315 -5.954 13.640 Atomic orbital electron populations 1.23332 0.76191 1.04134 1.02348 1.86652 1.23387 1.32204 1.83456 1.22052 0.89348 0.81569 0.71801 1.90641 1.66505 1.36527 1.45997 1.21969 0.89543 1.01310 1.08482 1.25359 0.84610 0.90683 0.75984 1.90358 1.21178 1.82992 1.34667 1.21241 0.94117 0.87693 0.98861 1.43704 1.33440 1.49294 1.02049 1.19161 1.08137 1.06937 1.05039 0.90463 1.24899 0.99246 0.95605 0.99320 1.69903 1.35028 1.19492 1.29613 0.86194 0.84463 0.77278 0.78241 1.21119 1.21886 1.20392 1.18169 0.93626 0.89535 0.85670 1.30450 0.91840 0.93487 0.91118 1.80847 1.15738 1.11635 1.10348 1.23074 1.01853 1.00634 0.90201 1.23135 1.02571 0.90630 0.99607 0.87695 0.91827 0.91947 0.88883 0.89609 0.92939 0.87136 0.92501 0.86624 0.87404 0.86918 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.34 -4.55 7.46 -39.27 -0.29 -4.84 16 3 C 0.51 7.13 7.47 36.01 0.27 7.40 16 4 O -0.51 -7.78 16.01 -18.75 -0.30 -8.08 16 5 C -0.21 -2.86 2.53 -156.81 -0.40 -3.26 16 6 C 0.36 6.16 6.84 -29.03 -0.20 5.96 16 7 O -0.42 -8.27 16.33 6.00 0.10 -8.18 16 8 C 0.11 2.01 4.80 -5.19 -0.02 1.98 16 9 N -0.57 -12.79 1.98 -177.95 -0.35 -13.14 16 10 C -0.26 -6.63 9.63 -15.06 -0.14 -6.77 16 11 H 0.08 1.91 7.92 -52.49 -0.42 1.49 16 12 C 0.01 0.22 4.83 -17.43 -0.08 0.14 16 13 N -0.90 -24.47 9.60 55.49 0.53 -23.94 16 14 Si 0.91 20.83 29.61 -169.99 -5.03 15.79 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 18 C 0.26 5.69 5.41 -6.83 -0.04 5.65 16 19 C 0.25 5.94 13.57 -20.73 -0.28 5.66 16 20 N -0.50 -12.77 18.54 42.19 0.78 -11.99 16 21 C -0.12 -1.30 9.94 -26.74 -0.27 -1.56 16 22 C -0.12 -1.42 9.56 -26.73 -0.26 -1.67 16 23 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 26 H 0.09 1.67 8.04 -51.93 -0.42 1.25 16 27 H 0.09 1.50 6.36 -51.93 -0.33 1.17 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.11 2.60 6.61 -51.93 -0.34 2.26 16 30 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 31 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.11 1.22 7.67 -51.93 -0.40 0.82 16 34 H 0.12 1.39 7.67 -51.93 -0.40 1.00 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -31.52 307.36 -4.26 -35.78 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -3.97 Total: -0.97 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: -0.35 Total: 14.93 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.96 Total: -49.07 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.50 Total: -21.09 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.52 -4.26 -35.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690533355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.736 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds