Wall clock time and date at job start Mon Mar 30 2020 04:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34235 * 116.99604 * 2 1 4 4 O 1.20828 * 120.00147 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99676 * 180.02562 * 3 2 1 6 6 C 1.50699 * 115.55294 * 325.58096 * 5 3 2 7 7 O 1.20756 * 119.99996 * 214.33244 * 6 5 3 8 8 C 1.50702 * 119.99720 * 34.33249 * 6 5 3 9 9 N 1.46503 * 109.46997 * 179.97438 * 8 6 5 10 10 C 1.36936 * 120.00312 * 270.00015 * 9 8 6 11 11 H 1.07994 * 119.99411 * 19.83140 * 10 9 8 12 12 C 1.38805 * 119.99994 * 199.83666 * 10 9 8 13 13 N 1.31615 * 120.00204 * 21.94458 * 12 10 9 14 14 Si 1.86805 * 119.99978 * 201.95100 * 12 10 9 15 15 H 1.48494 * 109.47041 * 89.99418 * 14 12 10 16 16 H 1.48497 * 109.47230 * 209.99988 * 14 12 10 17 17 H 1.48503 * 109.46610 * 329.99714 * 14 12 10 18 18 C 1.46501 * 119.99644 * 90.00168 * 9 8 6 19 19 C 1.47200 * 109.47308 * 83.93610 * 18 9 8 20 20 N 5.40428 * 101.17060 * 138.89039 * 2 1 3 21 21 C 1.52994 * 117.51560 * 111.28669 * 5 3 2 22 22 C 1.52998 * 60.00317 * 107.47762 * 21 5 3 23 23 H 1.09001 * 109.46846 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46680 * 299.99595 * 1 2 3 25 25 H 1.08998 * 109.47161 * 59.99789 * 1 2 3 26 26 H 1.09002 * 109.47274 * 59.99655 * 8 6 5 27 27 H 1.09001 * 109.47320 * 299.99730 * 8 6 5 28 28 H 0.97005 * 120.00517 * 180.02562 * 13 12 10 29 29 H 1.08998 * 109.47313 * 203.93782 * 18 9 8 30 30 H 1.08999 * 109.47309 * 323.93794 * 18 9 8 31 31 H 1.09001 * 117.49917 * 214.96877 * 21 5 3 32 32 H 1.09004 * 117.50378 * 359.97438 * 21 5 3 33 33 H 1.09001 * 117.50137 * 252.50898 * 22 21 5 34 34 H 1.08999 * 117.49861 * 107.48709 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.2745 0.1888 0.7674 7 8 5.3028 0.4342 1.3509 8 6 3.6992 -1.2035 0.8071 9 7 4.5670 -2.0676 1.6113 10 6 5.5909 -2.7546 1.0156 11 1 5.9675 -2.4364 0.0548 12 6 6.1444 -3.8601 1.6467 13 7 5.4550 -4.5104 2.5599 14 14 7.8681 -4.4248 1.1999 15 1 8.8549 -3.7419 2.0745 16 1 7.9723 -5.8940 1.3889 17 1 8.1472 -4.0872 -0.2191 18 6 4.3392 -2.1967 3.0527 19 6 3.3019 -3.2121 3.2966 20 7 2.4990 -3.9947 3.4860 21 6 4.2459 1.8042 -1.2651 22 6 4.2007 2.6673 -0.0026 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 3.6328 -1.5983 -0.2067 27 1 2.7042 -1.1731 1.2511 28 1 5.8419 -5.2827 3.0013 29 1 5.2655 -2.4989 3.5413 30 1 4.0116 -1.2385 3.4560 31 1 5.2052 1.3667 -1.5415 32 1 3.6045 2.0950 -2.0971 33 1 3.5295 3.5262 -0.0039 34 1 5.1302 2.7976 0.5515 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690533355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:04 Heat of formation + Delta-G solvation = -48.058570 kcal Electronic energy + Delta-G solvation = -20459.611234 eV Core-core repulsion = 17166.876051 eV Total energy + Delta-G solvation = -3292.735183 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97571 -40.38703 -38.28212 -37.68391 -36.67877 -36.04921 -33.40099 -30.39233 -29.05179 -28.28207 -26.14526 -24.12516 -23.53989 -22.42306 -20.49090 -19.37403 -18.70007 -18.09687 -17.55065 -17.41830 -17.04849 -16.35897 -15.87009 -15.71805 -15.36351 -15.19377 -14.93515 -14.25948 -14.17915 -13.92559 -13.52138 -13.21833 -13.11545 -12.96802 -12.73997 -12.52624 -12.49291 -12.33457 -12.04258 -11.91865 -11.81443 -11.72574 -11.60070 -11.52185 -10.99367 -10.40864 -9.00310 -7.94166 -5.33898 0.79031 1.15161 1.51941 1.56245 1.62173 1.68241 2.20224 2.47069 2.58257 2.66802 2.91134 3.29977 3.50904 3.61576 3.76701 3.82263 3.87036 4.30490 4.37916 4.39315 4.61038 4.63950 4.70691 4.76193 4.79347 4.88627 4.99160 5.11479 5.17662 5.30683 5.65890 6.19453 6.60171 6.70367 7.00608 7.28631 7.71102 8.12199 9.12366 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.006708 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.347161 B = 4172.815362 C = 5066.308933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.513 3.487 4 O -0.523 6.523 5 C -0.227 4.227 6 C 0.377 3.623 7 O -0.453 6.453 8 C 0.105 3.895 9 N -0.581 5.581 10 C -0.259 4.259 11 H 0.079 0.921 12 C -0.039 4.039 13 N -0.925 5.925 14 Si 0.963 3.037 15 H -0.286 1.286 16 H -0.304 1.304 17 H -0.269 1.269 18 C 0.262 3.738 19 C 0.261 3.739 20 N -0.536 5.536 21 C -0.100 4.100 22 C -0.114 4.114 23 H 0.121 0.879 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.251 0.749 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.951 13.936 -7.574 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.357 3.643 4 O -0.413 6.413 5 C -0.230 4.230 6 C 0.249 3.751 7 O -0.325 6.325 8 C -0.021 4.021 9 N -0.300 5.300 10 C -0.388 4.388 11 H 0.097 0.903 12 C -0.234 4.234 13 N -0.571 5.571 14 Si 0.793 3.207 15 H -0.213 1.213 16 H -0.231 1.231 17 H -0.194 1.194 18 C 0.132 3.868 19 C -0.057 4.057 20 N -0.218 5.218 21 C -0.137 4.137 22 C -0.150 4.150 23 H 0.139 0.861 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.751 13.032 -6.917 15.835 hybrid contribution 0.833 -0.607 -0.039 1.031 sum -4.918 12.425 -6.956 15.065 Atomic orbital electron populations 1.23584 0.74542 1.05483 1.02995 1.86618 1.25099 1.31989 1.83192 1.22028 0.89337 0.81524 0.71365 1.90635 1.66771 1.36952 1.46948 1.21778 0.89239 1.01368 1.10592 1.25007 0.83952 0.90671 0.75511 1.90359 1.22533 1.83457 1.36126 1.21425 0.94054 0.88055 0.98578 1.43869 1.33799 1.49722 1.02591 1.19406 1.08301 1.06297 1.04818 0.90289 1.25482 1.01795 0.96233 0.99939 1.70026 1.35971 1.19937 1.31123 0.85327 0.81196 0.75932 0.78290 1.21288 1.23110 1.19398 1.18261 0.92425 0.90408 0.85679 1.30895 0.91475 0.93160 0.90158 1.80836 1.16990 1.12552 1.11422 1.23284 1.01895 0.98641 0.89849 1.23217 1.02243 0.89677 0.99912 0.86072 0.91744 0.90796 0.88410 0.88613 0.93977 0.88908 0.89059 0.86050 0.85154 0.85896 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.35 -8.73 7.46 -51.47 -0.38 -9.11 16 3 C 0.51 13.27 7.47 71.24 0.53 13.80 16 4 O -0.52 -14.85 16.01 21.96 0.35 -14.50 16 5 C -0.23 -5.66 2.53 -53.68 -0.14 -5.80 16 6 C 0.38 12.08 6.84 29.10 0.20 12.28 16 7 O -0.45 -17.12 16.33 -1.44 -0.02 -17.14 16 8 C 0.11 3.73 4.80 85.63 0.41 4.14 16 9 N -0.58 -25.71 1.98 -716.91 -1.42 -27.13 16 10 C -0.26 -12.79 9.63 84.03 0.81 -11.98 16 11 H 0.08 3.81 7.92 -2.91 -0.02 3.79 16 12 C -0.04 -1.98 4.83 84.86 0.41 -1.57 16 13 N -0.93 -50.89 9.60 21.65 0.21 -50.69 16 14 Si 0.96 42.82 29.61 68.60 2.03 44.85 16 15 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 18 C 0.26 11.33 5.41 84.57 0.46 11.78 16 19 C 0.26 12.37 13.57 89.43 1.21 13.58 16 20 N -0.54 -27.15 18.54 20.02 0.37 -26.78 16 21 C -0.10 -1.83 9.94 30.59 0.30 -1.53 16 22 C -0.11 -2.33 9.56 30.59 0.29 -2.04 16 23 H 0.12 1.80 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.18 8.13 -2.38 -0.02 1.16 16 25 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 26 H 0.10 3.36 8.04 -2.39 -0.02 3.34 16 27 H 0.10 3.20 6.36 -2.39 -0.02 3.19 16 28 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 29 H 0.09 4.39 6.61 -2.39 -0.02 4.38 16 30 H 0.09 3.28 8.12 -2.39 -0.02 3.26 16 31 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.12 2.30 7.67 -2.39 -0.02 2.28 16 34 H 0.12 2.49 7.67 -2.39 -0.02 2.47 16 Total: -1.00 -66.18 307.36 7.95 -58.23 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.12 Total: 7.91 kcal Atomic # 6 Polarization: 28.67 SS G_CDS: 5.69 Total: 34.36 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -0.84 Total: -104.59 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -0.06 Total: -40.76 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -66.18 7.95 -58.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690533355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.173 kcal (2) G-P(sol) polarization free energy of solvation -66.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds