Wall clock time and date at job start Mon Mar 30 2020 05:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47126 * 269.99646 * 3 2 1 5 5 H 1.48503 * 109.47255 * 29.99921 * 3 2 1 6 6 H 1.48499 * 109.47060 * 149.99653 * 3 2 1 7 7 C 1.37883 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99992 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46943 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47190 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46718 * 305.00093 * 11 10 9 13 13 N 1.46897 * 109.47238 * 64.99525 * 11 10 9 14 14 C 1.50699 * 109.47248 * 185.00380 * 11 10 9 15 15 O 1.21280 * 119.99439 * 260.00129 * 14 11 10 16 16 N 1.34769 * 120.00525 * 79.99738 * 14 11 10 17 17 C 1.39633 * 120.00300 * 185.08569 * 16 14 11 18 18 C 1.39485 * 120.08481 * 174.92240 * 17 16 14 19 19 C 1.38448 * 117.95226 * 180.02562 * 18 17 16 20 20 C 1.39375 * 117.97796 * 0.02562 * 19 18 17 21 21 O 1.35761 * 120.06461 * 179.97438 * 20 19 18 22 22 N 1.32198 * 119.87013 * 359.97438 * 20 19 18 23 23 N 1.28348 * 122.20319 * 0.02562 * 22 20 19 24 24 H 0.97003 * 120.00319 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47728 * 59.99237 * 9 7 2 26 26 H 1.09004 * 109.46972 * 299.99109 * 9 7 2 27 27 H 1.08997 * 109.47317 * 59.99826 * 10 9 7 28 28 H 1.08991 * 109.47059 * 299.99490 * 10 9 7 29 29 H 1.00900 * 111.00479 * 296.05379 * 13 11 10 30 30 H 1.00906 * 110.99609 * 60.00026 * 13 11 10 31 31 H 0.97008 * 119.99853 * 5.08289 * 16 14 11 32 32 H 1.07997 * 121.02579 * 0.04437 * 18 17 16 33 33 H 1.07999 * 121.00785 * 179.72554 * 19 18 17 34 34 H 0.96697 * 113.99853 * 89.99329 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 1 0.7883 -5.0068 0.8432 13 7 0.7279 -5.1189 -1.2537 14 6 2.4547 -6.1299 0.1251 15 8 2.7862 -6.7537 -0.8608 16 7 2.9580 -6.4586 1.3313 17 6 3.9401 -7.4461 1.4325 18 6 4.5379 -7.7140 2.6640 19 6 5.5068 -8.7017 2.7138 20 6 5.8246 -9.3661 1.5306 21 8 6.7688 -10.3416 1.5308 22 7 5.2048 -9.0446 0.4080 23 7 4.3065 -8.1292 0.3607 24 1 -0.4851 0.8400 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 2.8719 -3.6044 0.8905 28 1 2.8717 -3.6044 -0.8894 29 1 0.0231 -4.4009 -1.3300 30 1 1.3475 -5.1034 -2.0500 31 1 2.6381 -6.0092 2.1292 32 1 4.2536 -7.1680 3.5513 33 1 6.0047 -8.9464 3.6404 34 1 6.4196 -11.2269 1.7022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691630281.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:09 Heat of formation + Delta-G solvation = -11.524039 kcal Electronic energy + Delta-G solvation = -19312.844379 eV Core-core repulsion = 16053.986204 eV Total energy + Delta-G solvation = -3258.858175 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51794 -39.76930 -37.76446 -35.73254 -35.13434 -33.13566 -32.91482 -30.48643 -29.96653 -26.85137 -25.21234 -24.50943 -23.34746 -21.03255 -20.14813 -19.26869 -18.27813 -17.97360 -16.92664 -16.35733 -16.21242 -15.36213 -14.79305 -14.68002 -14.48904 -14.34597 -14.01379 -13.82452 -13.22571 -13.06284 -12.43221 -12.26755 -11.89989 -11.80177 -11.29225 -11.11983 -10.97057 -10.72316 -10.50883 -10.06954 -10.03112 -9.59798 -9.32838 -9.24397 -8.78939 -8.48945 -8.29440 -6.13446 -4.16821 0.50649 0.61157 2.53444 2.68002 3.18203 3.24400 3.31329 3.34053 3.47115 4.02899 4.28776 4.35623 4.39673 4.66128 4.81053 5.06591 5.20283 5.22944 5.42912 5.50655 5.53515 5.62107 6.16713 6.21867 6.41943 6.78023 7.02974 7.10322 7.42041 7.46544 7.55232 7.81377 7.83580 8.13708 8.25461 8.62523 8.89050 9.48530 10.97384 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031476 B = 0.003577 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.356985 B = 7826.179884 C = 8315.910643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.139 4.139 11 C 0.080 3.920 12 H 0.101 0.899 13 N -0.830 5.830 14 C 0.512 3.488 15 O -0.462 6.462 16 N -0.654 5.654 17 C 0.299 3.701 18 C -0.137 4.137 19 C -0.107 4.107 20 C 0.215 3.785 21 O -0.475 6.475 22 N -0.227 5.227 23 N -0.207 5.207 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.358 0.642 30 H 0.348 0.652 31 H 0.422 0.578 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 -16.515 9.346 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.179 4.179 11 C -0.035 4.035 12 H 0.119 0.881 13 N -0.363 5.363 14 C 0.298 3.702 15 O -0.328 6.328 16 N -0.303 5.303 17 C 0.061 3.939 18 C -0.169 4.169 19 C -0.137 4.137 20 C 0.027 3.973 21 O -0.279 6.279 22 N -0.078 5.078 23 N -0.059 5.059 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.174 0.826 30 H 0.161 0.839 31 H 0.259 0.741 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.882 -17.333 7.123 19.963 hybrid contribution 0.666 2.027 2.007 2.929 sum 7.547 -15.306 9.130 19.354 Atomic orbital electron populations 1.69942 1.06021 1.26868 1.50306 1.25008 0.94875 0.99336 0.95045 0.86576 0.79814 0.83291 0.78242 1.20571 1.21130 1.19880 1.21170 0.93042 0.90859 1.51320 0.92695 1.19105 0.93651 0.91000 0.97480 1.22427 0.99985 0.93739 1.01748 1.21465 0.94386 0.91491 0.96185 0.88118 1.58736 1.18484 1.56058 1.03033 1.21390 0.81748 0.85037 0.82010 1.90798 1.55997 1.50221 1.35831 1.43802 1.38063 1.36374 1.12099 1.20423 0.90634 0.90852 0.91984 1.21939 0.97475 0.99477 0.98056 1.22364 0.96019 0.95700 0.99651 1.20861 0.91867 0.94157 0.90448 1.84842 1.30586 1.18646 1.93872 1.73017 1.01845 1.08743 1.24241 1.73725 1.07276 1.02262 1.22622 0.92823 0.96277 0.96219 0.92470 0.92400 0.82643 0.83863 0.74073 0.82481 0.82466 0.74254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.07 9.11 -34.44 -0.31 -14.39 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.59 4.78 -26.73 -0.13 -2.71 16 11 C 0.08 1.27 3.21 -68.86 -0.22 1.05 16 12 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 13 N -0.83 -13.65 8.94 -5.65 -0.05 -13.70 16 14 C 0.51 8.23 7.04 -10.99 -0.08 8.15 16 15 O -0.46 -9.16 14.55 5.56 0.08 -9.08 16 16 N -0.65 -8.07 5.40 -11.28 -0.06 -8.13 16 17 C 0.30 3.89 7.51 -154.38 -1.16 2.74 16 18 C -0.14 -1.19 10.06 -39.04 -0.39 -1.58 16 19 C -0.11 -0.88 10.15 -39.08 -0.40 -1.27 16 20 C 0.22 2.41 7.85 -16.97 -0.13 2.27 16 21 O -0.47 -4.24 13.58 -18.99 -0.26 -4.50 16 22 N -0.23 -3.47 11.51 30.51 0.35 -3.12 16 23 N -0.21 -3.44 9.07 31.32 0.28 -3.16 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.02 0.46 6.87 -51.93 -0.36 0.11 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.36 5.84 7.55 -39.29 -0.30 5.55 16 30 H 0.35 5.87 8.58 -39.29 -0.34 5.54 16 31 H 0.42 3.54 8.72 -40.82 -0.36 3.18 16 32 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.40 1.40 9.06 45.56 0.41 1.81 16 LS Contribution 302.61 15.07 4.56 4.56 Total: -1.00 -35.61 302.61 -5.44 -41.05 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.01 Total: 8.68 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.05 Total: -3.78 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 1.26 Total: -52.86 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.18 Total: -13.58 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.61 -5.44 -41.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691630281.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.526 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds