Wall clock time and date at job start Mon Mar 30 2020 05:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47126 * 269.99646 * 3 2 1 5 5 H 1.48503 * 109.47255 * 29.99921 * 3 2 1 6 6 H 1.48499 * 109.47060 * 149.99653 * 3 2 1 7 7 C 1.37883 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99992 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46943 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47190 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46718 * 305.00093 * 11 10 9 13 13 N 1.46897 * 109.47238 * 64.99525 * 11 10 9 14 14 C 1.50699 * 109.47248 * 185.00380 * 11 10 9 15 15 O 1.21280 * 119.99439 * 260.00129 * 14 11 10 16 16 N 1.34769 * 120.00525 * 79.99738 * 14 11 10 17 17 C 1.39633 * 120.00300 * 185.08569 * 16 14 11 18 18 C 1.39485 * 120.08481 * 174.92240 * 17 16 14 19 19 C 1.38448 * 117.95226 * 180.02562 * 18 17 16 20 20 C 1.39375 * 117.97796 * 0.02562 * 19 18 17 21 21 O 1.35761 * 120.06461 * 179.97438 * 20 19 18 22 22 N 1.32198 * 119.87013 * 359.97438 * 20 19 18 23 23 N 1.28348 * 122.20319 * 0.02562 * 22 20 19 24 24 H 0.97003 * 120.00319 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47728 * 59.99237 * 9 7 2 26 26 H 1.09004 * 109.46972 * 299.99109 * 9 7 2 27 27 H 1.08997 * 109.47317 * 59.99826 * 10 9 7 28 28 H 1.08991 * 109.47059 * 299.99490 * 10 9 7 29 29 H 1.00900 * 111.00479 * 296.05379 * 13 11 10 30 30 H 1.00906 * 110.99609 * 60.00026 * 13 11 10 31 31 H 0.97008 * 119.99853 * 5.08289 * 16 14 11 32 32 H 1.07997 * 121.02579 * 0.04437 * 18 17 16 33 33 H 1.07999 * 121.00785 * 179.72554 * 19 18 17 34 34 H 0.96697 * 113.99853 * 89.99329 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 1 0.7883 -5.0068 0.8432 13 7 0.7279 -5.1189 -1.2537 14 6 2.4547 -6.1299 0.1251 15 8 2.7862 -6.7537 -0.8608 16 7 2.9580 -6.4586 1.3313 17 6 3.9401 -7.4461 1.4325 18 6 4.5379 -7.7140 2.6640 19 6 5.5068 -8.7017 2.7138 20 6 5.8246 -9.3661 1.5306 21 8 6.7688 -10.3416 1.5308 22 7 5.2048 -9.0446 0.4080 23 7 4.3065 -8.1292 0.3607 24 1 -0.4851 0.8400 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 2.8719 -3.6044 0.8905 28 1 2.8717 -3.6044 -0.8894 29 1 0.0231 -4.4009 -1.3300 30 1 1.3475 -5.1034 -2.0500 31 1 2.6381 -6.0092 2.1292 32 1 4.2536 -7.1680 3.5513 33 1 6.0047 -8.9464 3.6404 34 1 6.4196 -11.2269 1.7022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691630281.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:09 Heat of formation + Delta-G solvation = -43.871177 kcal Electronic energy + Delta-G solvation = -19314.247056 eV Core-core repulsion = 16053.986204 eV Total energy + Delta-G solvation = -3260.260853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.42426 -40.91254 -38.56851 -37.14910 -36.26234 -34.84190 -33.91515 -31.69095 -31.44499 -28.33216 -26.41419 -25.65370 -24.53682 -22.52563 -21.43093 -20.02952 -19.27458 -19.09121 -18.41087 -17.73696 -17.17454 -16.60231 -16.31399 -15.93375 -15.86139 -15.34112 -15.05955 -14.81084 -14.63983 -14.39637 -14.03689 -13.46881 -13.18481 -12.97827 -12.84719 -12.65720 -12.50701 -12.27713 -11.80730 -11.70047 -11.29558 -11.23944 -10.86284 -10.55243 -10.27912 -9.78444 -9.65996 -8.21071 -6.30840 -0.24517 -0.19525 1.39939 1.41103 1.48084 1.51620 1.60119 2.37763 2.41112 2.62357 3.12886 3.14980 3.52675 3.71713 3.81000 3.81882 4.03466 4.10197 4.21140 4.48305 4.65233 4.77605 4.83856 4.91891 5.08843 5.31684 5.48044 5.67190 5.81876 6.00667 6.21909 6.24423 6.45926 6.56515 6.84835 7.00836 7.38281 7.74560 8.89521 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031476 B = 0.003577 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.356985 B = 7826.179884 C = 8315.910643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.123 4.123 11 C 0.089 3.911 12 H 0.124 0.876 13 N -0.832 5.832 14 C 0.515 3.485 15 O -0.507 6.507 16 N -0.639 5.639 17 C 0.275 3.725 18 C -0.115 4.115 19 C -0.094 4.094 20 C 0.221 3.779 21 O -0.482 6.482 22 N -0.283 5.283 23 N -0.264 5.264 24 H 0.264 0.736 25 H 0.002 0.998 26 H 0.009 0.991 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.356 0.644 30 H 0.344 0.656 31 H 0.441 0.559 32 H 0.206 0.794 33 H 0.205 0.795 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 -16.705 12.080 22.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.162 4.162 11 C -0.027 4.027 12 H 0.142 0.858 13 N -0.364 5.364 14 C 0.302 3.698 15 O -0.377 6.377 16 N -0.290 5.290 17 C 0.036 3.964 18 C -0.146 4.146 19 C -0.123 4.123 20 C 0.031 3.969 21 O -0.290 6.290 22 N -0.133 5.133 23 N -0.114 5.114 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.027 0.973 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.172 0.828 30 H 0.157 0.843 31 H 0.282 0.718 32 H 0.223 0.777 33 H 0.222 0.778 34 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 8.137 -17.561 9.893 21.736 hybrid contribution 0.358 1.972 1.244 2.358 sum 8.495 -15.589 11.137 20.958 Atomic orbital electron populations 1.70048 1.07395 1.27745 1.51342 1.25823 0.95706 1.02835 0.94813 0.85579 0.78828 0.79196 0.78243 1.20392 1.20638 1.18953 1.21627 0.93337 0.92536 1.50823 0.92818 1.18972 0.93986 0.91693 0.96054 1.22167 0.98886 0.93557 1.01635 1.21404 0.94450 0.90159 0.96652 0.85828 1.58754 1.18470 1.55849 1.03303 1.21274 0.81333 0.84608 0.82619 1.90788 1.57473 1.51775 1.37632 1.43470 1.37675 1.36276 1.11590 1.20700 0.91384 0.91102 0.93233 1.22429 0.95850 0.98710 0.97606 1.22819 0.95265 0.94189 1.00053 1.21196 0.90814 0.94246 0.90688 1.84789 1.30366 1.19872 1.93976 1.72846 1.03554 1.10067 1.26872 1.73502 1.08809 1.03792 1.25302 0.92731 0.97933 0.97277 0.90998 0.94050 0.82781 0.84333 0.71780 0.77722 0.77834 0.71523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.11 13.29 21.45 0.28 -52.82 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.96 42.65 29.54 68.60 2.03 44.68 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.55 -29.15 9.11 25.60 0.23 -28.92 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.03 1.41 4.74 29.85 0.14 1.55 16 10 C -0.12 -4.51 4.78 30.60 0.15 -4.36 16 11 C 0.09 2.76 3.21 44.17 0.14 2.90 16 12 H 0.12 3.27 8.14 -2.39 -0.02 3.26 16 13 N -0.83 -27.73 8.94 -171.80 -1.54 -29.27 16 14 C 0.52 16.43 7.04 87.66 0.62 17.05 16 15 O -0.51 -20.70 14.55 -3.03 -0.04 -20.74 16 16 N -0.64 -14.75 5.40 -307.98 -1.66 -16.42 16 17 C 0.28 6.77 7.51 132.97 1.00 7.77 16 18 C -0.12 -1.53 10.06 22.62 0.23 -1.31 16 19 C -0.09 -1.15 10.15 22.59 0.23 -0.92 16 20 C 0.22 4.55 7.85 84.91 0.67 5.22 16 21 O -0.48 -7.63 13.58 -90.88 -1.23 -8.86 16 22 N -0.28 -8.77 11.51 -170.22 -1.96 -10.73 16 23 N -0.26 -8.92 9.07 -54.84 -0.50 -9.42 16 24 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 25 H 0.00 0.12 6.87 -2.39 -0.02 0.10 16 26 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.36 11.88 7.55 -89.69 -0.68 11.20 16 30 H 0.34 12.01 8.58 -89.69 -0.77 11.24 16 31 H 0.44 6.13 8.72 -92.70 -0.81 5.33 16 32 H 0.21 0.67 8.06 -2.91 -0.02 0.64 16 33 H 0.20 0.58 8.06 -2.91 -0.02 0.56 16 34 H 0.42 2.05 9.06 -74.06 -0.67 1.37 16 Total: -1.00 -80.49 302.61 -2.50 -82.98 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -1.74 Total: 20.78 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 3.86 Total: -0.18 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -5.37 Total: -118.66 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.28 Total: -29.60 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -80.49 -2.50 -82.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691630281.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.113 kcal (2) G-P(sol) polarization free energy of solvation -80.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds