Wall clock time and date at job start Mon Mar 30 2020 05:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00270 * 2 1 4 4 H 1.48500 * 109.46870 * 240.00038 * 3 2 1 5 5 H 1.48502 * 109.46974 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47126 * 120.00028 * 3 2 1 7 7 C 1.37882 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00335 * 180.27678 * 7 2 1 9 9 C 1.50699 * 119.99600 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46863 * 55.00139 * 11 10 9 13 13 N 1.46897 * 109.47186 * 295.00614 * 11 10 9 14 14 C 1.50693 * 109.47249 * 174.99993 * 11 10 9 15 15 O 1.21280 * 120.00350 * 99.99828 * 14 11 10 16 16 N 1.34779 * 120.00302 * 280.00612 * 14 11 10 17 17 C 1.39621 * 120.00433 * 174.91714 * 16 14 11 18 18 C 1.39483 * 120.08923 * 185.06089 * 17 16 14 19 19 C 1.38444 * 117.95511 * 179.97438 * 18 17 16 20 20 C 1.39370 * 117.97963 * 0.02562 * 19 18 17 21 21 O 1.35767 * 120.06386 * 179.97438 * 20 19 18 22 22 N 1.32192 * 119.87331 * 0.02562 * 20 19 18 23 23 N 1.28347 * 122.19629 * 359.73438 * 22 20 19 24 24 H 0.97005 * 119.99576 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47076 * 300.00136 * 9 7 2 26 26 H 1.08994 * 109.47361 * 60.00030 * 9 7 2 27 27 H 1.08993 * 109.46729 * 300.00627 * 10 9 7 28 28 H 1.09003 * 109.46754 * 60.00087 * 10 9 7 29 29 H 1.00905 * 110.99447 * 299.99246 * 13 11 10 30 30 H 1.00898 * 111.00706 * 63.95326 * 13 11 10 31 31 H 0.97002 * 119.99613 * 354.91947 * 16 14 11 32 32 H 1.07998 * 121.02164 * 359.95580 * 18 17 16 33 33 H 1.08004 * 121.00956 * 179.97438 * 19 18 17 34 34 H 0.96693 * 114.00021 * 90.00220 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0051 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6622 0.0015 11 6 1.4801 -4.9871 0.0033 12 1 0.7870 -5.0076 -0.8378 13 7 0.7297 -5.1175 1.2593 14 6 2.4545 -6.1300 -0.1208 15 8 2.7874 -6.7528 0.8652 16 7 2.9562 -6.4599 -1.3274 17 6 3.9379 -7.4475 -1.4291 18 6 4.5339 -7.7169 -2.6611 19 6 5.5026 -8.7047 -2.7113 20 6 5.8214 -9.3685 -1.5280 21 8 6.7649 -10.3448 -1.5289 22 7 5.2028 -9.0464 -0.4051 23 7 4.3078 -8.1278 -0.3566 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5562 0.8920 26 1 0.6240 -2.5575 -0.8879 27 1 2.8711 -3.6047 -0.8889 28 1 2.8725 -3.6040 0.8910 29 1 1.3504 -5.1013 2.0547 30 1 0.0250 -4.3995 1.3359 31 1 2.6351 -6.0112 -2.1253 32 1 4.2482 -7.1719 -3.5486 33 1 5.9956 -8.9539 -3.6393 34 1 7.6616 -10.0254 -1.3592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691630282.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:12 Heat of formation + Delta-G solvation = -11.552993 kcal Electronic energy + Delta-G solvation = -19314.605975 eV Core-core repulsion = 16055.746544 eV Total energy + Delta-G solvation = -3258.859431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51803 -39.76967 -37.76056 -35.73520 -35.13530 -33.13541 -32.91975 -30.48567 -29.97088 -26.85413 -25.21306 -24.51048 -23.34874 -21.03483 -20.15296 -19.25904 -18.27811 -17.97637 -16.92511 -16.37229 -16.20656 -15.36040 -14.77402 -14.68104 -14.50987 -14.37430 -13.99290 -13.82519 -13.22980 -13.06486 -12.43145 -12.26034 -11.96813 -11.75020 -11.27480 -11.13191 -10.96825 -10.75355 -10.50919 -10.07112 -10.03565 -9.59865 -9.34275 -9.24969 -8.78615 -8.49305 -8.29511 -6.13844 -4.17419 0.50705 0.61095 2.54288 2.66434 3.20647 3.24770 3.30116 3.32214 3.45737 4.02859 4.28839 4.34950 4.39695 4.66187 4.81151 5.06392 5.20265 5.22405 5.42854 5.50655 5.53427 5.61668 6.16108 6.21863 6.41054 6.77334 7.02946 7.10415 7.41701 7.46313 7.54784 7.81367 7.83044 8.13647 8.24812 8.62592 8.88222 9.47858 10.96937 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031208 B = 0.003582 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.002828 B = 7814.546063 C = 8305.657347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.139 4.139 11 C 0.080 3.920 12 H 0.101 0.899 13 N -0.830 5.830 14 C 0.512 3.488 15 O -0.462 6.462 16 N -0.654 5.654 17 C 0.299 3.701 18 C -0.138 4.138 19 C -0.107 4.107 20 C 0.215 3.785 21 O -0.475 6.475 22 N -0.227 5.227 23 N -0.207 5.207 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.348 0.652 30 H 0.358 0.642 31 H 0.422 0.578 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.246 -14.177 -8.676 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.179 4.179 11 C -0.035 4.035 12 H 0.119 0.881 13 N -0.363 5.363 14 C 0.298 3.702 15 O -0.328 6.328 16 N -0.303 5.303 17 C 0.061 3.939 18 C -0.170 4.170 19 C -0.137 4.137 20 C 0.027 3.973 21 O -0.280 6.280 22 N -0.078 5.078 23 N -0.059 5.059 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.174 0.826 31 H 0.259 0.741 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 8.412 -15.817 -6.679 19.120 hybrid contribution 1.347 2.673 -1.834 3.510 sum 9.759 -13.144 -8.513 18.452 Atomic orbital electron populations 1.69934 1.06023 1.26988 1.50170 1.25008 0.94874 0.99320 0.95032 0.86636 0.79601 0.82977 0.78686 1.20218 1.21179 1.20188 1.21130 0.92994 0.90875 1.51497 0.92753 1.19101 0.93652 0.90977 0.97488 1.22425 0.99983 0.93748 1.01712 1.21464 0.94417 0.91481 0.96178 0.88115 1.58728 1.18496 1.56086 1.02999 1.21391 0.81766 0.85011 0.82012 1.90797 1.56035 1.50173 1.35838 1.43801 1.37834 1.36627 1.12083 1.20421 0.90708 0.90787 0.91968 1.21940 0.97409 0.99568 0.98034 1.22362 0.97415 0.93887 1.00064 1.20861 0.94789 0.91027 0.90655 1.84828 1.19065 1.30990 1.93137 1.73021 1.03220 1.07277 1.24324 1.73727 1.07822 1.01718 1.22620 0.92754 0.96276 0.96220 0.92472 0.92424 0.83869 0.82636 0.74068 0.82487 0.82467 0.74185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.03 9.11 -34.44 -0.31 -14.34 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 10 C -0.14 -2.56 4.78 -26.73 -0.13 -2.69 16 11 C 0.08 1.26 3.21 -68.87 -0.22 1.04 16 12 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 13 N -0.83 -13.66 8.94 -5.66 -0.05 -13.71 16 14 C 0.51 8.22 7.04 -10.99 -0.08 8.14 16 15 O -0.46 -9.15 14.55 5.56 0.08 -9.07 16 16 N -0.65 -8.07 5.40 -11.28 -0.06 -8.13 16 17 C 0.30 3.90 7.51 -154.38 -1.16 2.74 16 18 C -0.14 -1.19 10.06 -39.04 -0.39 -1.58 16 19 C -0.11 -0.88 10.15 -39.08 -0.40 -1.27 16 20 C 0.22 2.41 7.85 -16.98 -0.13 2.27 16 21 O -0.48 -4.25 13.58 -19.01 -0.26 -4.50 16 22 N -0.23 -3.47 11.51 30.51 0.35 -3.12 16 23 N -0.21 -3.44 9.07 31.31 0.28 -3.16 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.02 0.46 6.87 -51.93 -0.36 0.11 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.35 5.86 8.58 -39.29 -0.34 5.52 16 30 H 0.36 5.85 7.55 -39.29 -0.30 5.55 16 31 H 0.42 3.55 8.72 -40.82 -0.36 3.19 16 32 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.40 1.48 9.06 45.56 0.41 1.90 16 LS Contribution 302.61 15.07 4.56 4.56 Total: -1.00 -35.42 302.61 -5.44 -40.86 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -3.01 Total: 8.86 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -3.05 Total: -3.71 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 1.26 Total: -52.81 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.18 Total: -13.57 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.42 -5.44 -40.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691630282.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.312 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds