Wall clock time and date at job start Mon Mar 30 2020 05:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00270 * 2 1 4 4 H 1.48500 * 109.46870 * 240.00038 * 3 2 1 5 5 H 1.48502 * 109.46974 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47126 * 120.00028 * 3 2 1 7 7 C 1.37882 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00335 * 180.27678 * 7 2 1 9 9 C 1.50699 * 119.99600 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46863 * 55.00139 * 11 10 9 13 13 N 1.46897 * 109.47186 * 295.00614 * 11 10 9 14 14 C 1.50693 * 109.47249 * 174.99993 * 11 10 9 15 15 O 1.21280 * 120.00350 * 99.99828 * 14 11 10 16 16 N 1.34779 * 120.00302 * 280.00612 * 14 11 10 17 17 C 1.39621 * 120.00433 * 174.91714 * 16 14 11 18 18 C 1.39483 * 120.08923 * 185.06089 * 17 16 14 19 19 C 1.38444 * 117.95511 * 179.97438 * 18 17 16 20 20 C 1.39370 * 117.97963 * 0.02562 * 19 18 17 21 21 O 1.35767 * 120.06386 * 179.97438 * 20 19 18 22 22 N 1.32192 * 119.87331 * 0.02562 * 20 19 18 23 23 N 1.28347 * 122.19629 * 359.73438 * 22 20 19 24 24 H 0.97005 * 119.99576 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47076 * 300.00136 * 9 7 2 26 26 H 1.08994 * 109.47361 * 60.00030 * 9 7 2 27 27 H 1.08993 * 109.46729 * 300.00627 * 10 9 7 28 28 H 1.09003 * 109.46754 * 60.00087 * 10 9 7 29 29 H 1.00905 * 110.99447 * 299.99246 * 13 11 10 30 30 H 1.00898 * 111.00706 * 63.95326 * 13 11 10 31 31 H 0.97002 * 119.99613 * 354.91947 * 16 14 11 32 32 H 1.07998 * 121.02164 * 359.95580 * 18 17 16 33 33 H 1.08004 * 121.00956 * 179.97438 * 19 18 17 34 34 H 0.96693 * 114.00021 * 90.00220 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0051 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6622 0.0015 11 6 1.4801 -4.9871 0.0033 12 1 0.7870 -5.0076 -0.8378 13 7 0.7297 -5.1175 1.2593 14 6 2.4545 -6.1300 -0.1208 15 8 2.7874 -6.7528 0.8652 16 7 2.9562 -6.4599 -1.3274 17 6 3.9379 -7.4475 -1.4291 18 6 4.5339 -7.7169 -2.6611 19 6 5.5026 -8.7047 -2.7113 20 6 5.8214 -9.3685 -1.5280 21 8 6.7649 -10.3448 -1.5289 22 7 5.2028 -9.0464 -0.4051 23 7 4.3078 -8.1278 -0.3566 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5562 0.8920 26 1 0.6240 -2.5575 -0.8879 27 1 2.8711 -3.6047 -0.8889 28 1 2.8725 -3.6040 0.8910 29 1 1.3504 -5.1013 2.0547 30 1 0.0250 -4.3995 1.3359 31 1 2.6351 -6.0112 -2.1253 32 1 4.2482 -7.1719 -3.5486 33 1 5.9956 -8.9539 -3.6393 34 1 7.6616 -10.0254 -1.3592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691630282.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:11 Heat of formation + Delta-G solvation = -43.720641 kcal Electronic energy + Delta-G solvation = -19316.000869 eV Core-core repulsion = 16055.746544 eV Total energy + Delta-G solvation = -3260.254325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.42473 -40.91234 -38.56567 -37.14763 -36.26242 -34.83891 -33.91531 -31.68931 -31.44448 -28.33140 -26.41217 -25.65253 -24.53588 -22.52285 -21.43124 -20.02274 -19.27282 -19.09242 -18.40707 -17.73525 -17.17975 -16.60218 -16.31319 -15.91566 -15.86906 -15.34235 -15.10473 -14.78175 -14.51408 -14.50608 -14.02723 -13.47586 -13.18412 -12.98533 -12.83373 -12.59854 -12.54905 -12.29070 -11.79450 -11.69623 -11.30784 -11.23642 -10.86842 -10.54384 -10.27733 -9.77712 -9.66330 -8.20529 -6.30525 -0.24600 -0.19581 1.40924 1.42329 1.49208 1.51237 1.57916 2.40226 2.41270 2.60573 3.13307 3.15078 3.52725 3.71785 3.81002 3.81929 4.03333 4.10378 4.21267 4.48161 4.65652 4.77641 4.83969 4.91716 5.09229 5.31673 5.48205 5.67439 5.82137 6.00812 6.22074 6.24503 6.46098 6.55566 6.85106 7.00858 7.38608 7.74572 8.89865 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031208 B = 0.003582 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.002828 B = 7814.546063 C = 8305.657347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.122 4.122 11 C 0.088 3.912 12 H 0.123 0.877 13 N -0.832 5.832 14 C 0.516 3.484 15 O -0.507 6.507 16 N -0.639 5.639 17 C 0.275 3.725 18 C -0.115 4.115 19 C -0.094 4.094 20 C 0.220 3.780 21 O -0.482 6.482 22 N -0.283 5.283 23 N -0.264 5.264 24 H 0.264 0.736 25 H 0.002 0.998 26 H 0.008 0.992 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.344 0.656 30 H 0.356 0.644 31 H 0.440 0.560 32 H 0.206 0.794 33 H 0.205 0.795 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.673 -14.226 -11.382 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.162 4.162 11 C -0.027 4.027 12 H 0.141 0.859 13 N -0.364 5.364 14 C 0.302 3.698 15 O -0.377 6.377 16 N -0.290 5.290 17 C 0.036 3.964 18 C -0.146 4.146 19 C -0.123 4.123 20 C 0.030 3.970 21 O -0.290 6.290 22 N -0.133 5.133 23 N -0.114 5.114 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.157 0.843 30 H 0.172 0.828 31 H 0.282 0.718 32 H 0.223 0.777 33 H 0.222 0.778 34 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 9.878 -15.881 -9.417 20.939 hybrid contribution 0.995 2.587 -1.075 2.973 sum 10.873 -13.294 -10.492 20.126 Atomic orbital electron populations 1.70046 1.07433 1.27809 1.51275 1.25833 0.95699 1.02863 0.94796 0.85631 0.78398 0.78809 0.79002 1.19054 1.20944 1.19887 1.21602 0.93365 0.92508 1.50937 0.92724 1.18971 0.94001 0.91732 0.96015 1.22161 0.98866 0.93454 1.01688 1.21404 0.94481 0.90223 0.96592 0.85916 1.58746 1.18504 1.55888 1.03299 1.21273 0.81346 0.84580 0.82617 1.90788 1.57499 1.51732 1.37638 1.43470 1.37479 1.36503 1.11572 1.20698 0.91450 0.91047 0.93211 1.22430 0.95639 0.98947 0.97582 1.22818 0.96629 0.92438 1.00429 1.21195 0.94275 0.90553 0.90937 1.84778 1.20236 1.30897 1.93091 1.72849 1.04819 1.08669 1.26989 1.73505 1.09353 1.03236 1.25312 0.92739 0.97981 0.97345 0.90907 0.93987 0.84310 0.82783 0.71785 0.77726 0.77829 0.71551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.05 13.29 21.45 0.28 -52.77 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -29.03 9.11 25.60 0.23 -28.79 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.03 1.40 4.74 29.85 0.14 1.54 16 10 C -0.12 -4.44 4.78 30.60 0.15 -4.29 16 11 C 0.09 2.75 3.21 44.17 0.14 2.89 16 12 H 0.12 3.27 8.14 -2.38 -0.02 3.25 16 13 N -0.83 -27.81 8.94 -171.81 -1.54 -29.34 16 14 C 0.52 16.41 7.04 87.65 0.62 17.03 16 15 O -0.51 -20.66 14.55 -3.03 -0.04 -20.71 16 16 N -0.64 -14.75 5.40 -307.98 -1.66 -16.41 16 17 C 0.28 6.77 7.51 132.97 1.00 7.77 16 18 C -0.12 -1.53 10.06 22.62 0.23 -1.30 16 19 C -0.09 -1.15 10.15 22.59 0.23 -0.92 16 20 C 0.22 4.55 7.85 84.91 0.67 5.21 16 21 O -0.48 -7.63 13.58 -90.94 -1.23 -8.87 16 22 N -0.28 -8.77 11.51 -170.23 -1.96 -10.73 16 23 N -0.26 -8.92 9.07 -54.84 -0.50 -9.42 16 24 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 25 H 0.00 0.09 6.87 -2.39 -0.02 0.08 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.34 12.00 8.58 -89.69 -0.77 11.23 16 30 H 0.36 11.91 7.55 -89.70 -0.68 11.23 16 31 H 0.44 6.15 8.72 -92.71 -0.81 5.34 16 32 H 0.21 0.67 8.06 -2.91 -0.02 0.64 16 33 H 0.20 0.58 8.06 -2.91 -0.02 0.55 16 34 H 0.42 2.23 9.06 -74.06 -0.67 1.56 16 Total: -1.00 -80.10 302.61 -2.50 -82.60 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -1.74 Total: 21.30 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 3.86 Total: -0.04 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -5.37 Total: -118.66 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.28 Total: -29.58 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -80.10 -2.50 -82.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691630282.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.879 kcal (2) G-P(sol) polarization free energy of solvation -80.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds