Wall clock time and date at job start Mon Mar 30 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34665 * 126.59180 * 2 1 4 4 N 1.34128 * 108.02058 * 179.97438 * 3 2 1 5 5 C 1.30497 * 109.25686 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.65016 * 180.26637 * 5 4 3 7 7 N 1.46496 * 109.46933 * 274.68706 * 6 5 4 8 8 C 1.46505 * 119.99842 * 269.99739 * 7 6 5 9 9 C 1.34780 * 120.00127 * 89.99985 * 7 6 5 10 10 O 1.21439 * 120.00183 * 356.46404 * 9 7 6 11 11 C 1.48835 * 119.99767 * 176.46288 * 9 7 6 12 12 O 1.21501 * 120.00254 * 5.93844 * 11 9 7 13 13 N 1.34785 * 119.99718 * 185.93264 * 11 9 7 14 14 C 1.36111 * 119.99571 * 180.02562 * 13 11 9 15 15 H 1.08005 * 120.00614 * 0.02562 * 14 13 11 16 16 C 1.39594 * 119.99757 * 180.02562 * 14 13 11 17 17 N 1.31017 * 119.99653 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00011 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47592 * 89.99725 * 18 16 14 20 20 H 1.48501 * 109.46825 * 209.99950 * 18 16 14 21 21 H 1.48498 * 109.46794 * 329.99412 * 18 16 14 22 22 N 1.35039 * 108.69908 * 359.97438 * 5 4 3 23 23 H 0.97005 * 126.39637 * 179.97438 * 22 5 4 24 24 H 1.09001 * 109.46417 * 270.03562 * 1 2 3 25 25 H 1.08994 * 109.47092 * 30.03426 * 1 2 3 26 26 H 1.08999 * 109.47259 * 150.04197 * 1 2 3 27 27 H 1.08000 * 125.99106 * 359.93970 * 3 2 1 28 28 H 1.09001 * 109.47276 * 34.68196 * 6 5 4 29 29 H 1.08998 * 109.47655 * 154.68823 * 6 5 4 30 30 H 1.09004 * 109.46778 * 95.99463 * 8 7 6 31 31 H 1.09008 * 109.47096 * 215.98772 * 8 7 6 32 32 H 1.08993 * 109.46982 * 335.99300 * 8 7 6 33 33 H 0.97002 * 119.99887 * 0.02562 * 13 11 9 34 34 H 0.97000 * 119.99580 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6541 0.0006 5 6 3.5968 -0.6508 0.0004 6 6 4.8318 -1.5145 0.0065 7 7 5.3037 -1.7015 -1.3677 8 6 4.8156 -2.8313 -2.1624 9 6 6.1869 -0.8342 -1.9008 10 8 6.5426 0.1378 -1.2656 11 6 6.7264 -1.0678 -3.2681 12 8 6.2916 -1.9779 -3.9456 13 7 7.6973 -0.2696 -3.7550 14 6 8.1902 -0.4829 -5.0056 15 1 7.8032 -1.2914 -5.6081 16 6 9.1961 0.3435 -5.5096 17 7 9.6652 1.3246 -4.7790 18 14 9.8722 0.0512 -7.2263 19 1 9.0807 0.8330 -8.2098 20 1 11.2922 0.4825 -7.2790 21 1 9.7814 -1.3941 -7.5545 22 7 2.3230 -1.0990 0.0002 23 1 2.0392 -2.0266 -0.0003 24 1 -0.3632 0.0006 1.0277 25 1 -0.3633 0.8896 -0.5143 26 1 -0.3634 -0.8903 -0.5132 27 1 1.9865 2.1117 -0.0009 28 1 5.6108 -1.0303 0.5954 29 1 4.5950 -2.4841 0.4445 30 1 3.9831 -2.5044 -2.7855 31 1 5.6199 -3.2037 -2.7969 32 1 4.4806 -3.6263 -1.4962 33 1 8.0446 0.4569 -3.2140 34 1 10.3639 1.8990 -5.1294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693469388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:09 Heat of formation + Delta-G solvation = -0.448869 kcal Electronic energy + Delta-G solvation = -19870.539687 eV Core-core repulsion = 16612.161767 eV Total energy + Delta-G solvation = -3258.377920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03142 -39.57323 -37.21727 -35.47739 -34.05423 -32.76048 -31.86201 -31.36376 -28.91782 -26.42019 -25.74464 -24.89997 -22.27623 -21.08575 -20.39704 -19.02558 -18.12380 -17.33305 -16.55068 -16.10143 -15.34687 -15.10301 -14.87681 -14.19258 -14.06848 -13.89656 -13.65917 -13.28160 -13.00700 -12.78128 -12.70368 -12.41548 -12.26820 -12.04938 -11.83445 -11.58492 -11.17420 -10.49415 -10.39383 -10.14341 -9.91786 -9.76785 -9.69482 -8.48631 -8.30355 -8.19657 -7.88092 -6.64853 -3.97392 1.94604 2.48630 3.00193 3.08684 3.16993 3.18938 3.23759 3.59208 4.06576 4.26433 4.50301 4.83305 4.84059 4.95724 5.10392 5.20971 5.30773 5.41178 5.48281 5.60882 5.63657 5.81431 6.01486 6.06952 6.23949 6.48356 6.81041 6.87225 7.32832 7.37513 7.61598 7.80226 8.23884 8.34495 8.63312 8.97939 9.34196 9.87205 10.49853 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.032946 B = 0.004229 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.665085 B = 6620.117642 C = 6799.047562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.034 4.034 3 C -0.026 4.026 4 N -0.459 5.459 5 C 0.193 3.807 6 C 0.201 3.799 7 N -0.600 5.600 8 C 0.074 3.926 9 C 0.513 3.487 10 O -0.521 6.521 11 C 0.395 3.605 12 O -0.592 6.592 13 N -0.496 5.496 14 C -0.306 4.306 15 H 0.113 0.887 16 C 0.031 3.969 17 N -0.867 5.867 18 Si 0.939 3.061 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.265 1.265 22 N -0.562 5.562 23 H 0.414 0.586 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.167 0.833 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.120 0.880 32 H 0.048 0.952 33 H 0.405 0.595 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 -6.084 9.101 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.149 4.149 3 C -0.175 4.175 4 N -0.177 5.177 5 C -0.072 4.072 6 C 0.075 3.925 7 N -0.336 5.336 8 C -0.068 4.068 9 C 0.299 3.701 10 O -0.395 6.395 11 C 0.180 3.820 12 O -0.482 6.482 13 N -0.130 5.130 14 C -0.437 4.437 15 H 0.130 0.870 16 C -0.176 4.176 17 N -0.505 5.505 18 Si 0.764 3.236 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.189 1.189 22 N -0.167 5.167 23 H 0.251 0.749 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.184 0.816 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.138 0.862 32 H 0.066 0.934 33 H 0.241 0.759 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.027 -5.413 8.980 16.722 hybrid contribution -0.574 -0.519 -0.495 0.919 sum -13.600 -5.932 8.485 17.093 Atomic orbital electron populations 1.20180 0.87246 1.03282 1.02437 1.21267 0.94304 0.87378 1.11996 1.22200 0.88535 0.98572 1.08241 1.70378 1.21882 1.08198 1.17270 1.23817 0.85743 0.91659 1.05962 1.19680 0.90721 0.96839 0.85241 1.47626 1.44118 1.28663 1.13205 1.22373 1.02672 0.86675 0.95068 1.20730 0.78928 0.82097 0.88310 1.90741 1.58663 1.27562 1.62562 1.18891 0.87179 0.88179 0.87746 1.90440 1.63424 1.34045 1.60281 1.41566 1.29524 1.26743 1.15168 1.19872 1.17222 1.15315 0.91301 0.86966 1.25596 0.96402 0.94971 1.00612 1.69492 1.26781 1.16324 1.37881 0.85724 0.77909 0.79323 0.80602 1.19923 1.20521 1.18913 1.43187 1.07001 1.09075 1.57392 0.74874 0.91135 0.90011 0.91900 0.81571 0.86870 0.89156 0.93576 0.86194 0.93364 0.75944 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.44 36.01 0.38 -0.18 16 2 C -0.03 -0.40 7.24 -81.60 -0.59 -0.99 16 3 C -0.03 -0.40 11.79 -17.81 -0.21 -0.61 16 4 N -0.46 -8.47 11.25 -10.82 -0.12 -8.60 16 5 C 0.19 2.99 7.73 -155.42 -1.20 1.78 16 6 C 0.20 2.90 6.04 -5.20 -0.03 2.87 16 7 N -0.60 -10.72 2.86 -183.70 -0.52 -11.25 16 8 C 0.07 1.16 9.58 59.85 0.57 1.73 16 9 C 0.51 11.64 7.71 -11.87 -0.09 11.55 16 10 O -0.52 -12.87 16.09 5.42 0.09 -12.79 16 11 C 0.40 10.05 7.70 -11.87 -0.09 9.96 16 12 O -0.59 -15.37 12.69 5.36 0.07 -15.30 16 13 N -0.50 -13.46 5.24 -11.58 -0.06 -13.52 16 14 C -0.31 -8.47 9.67 -15.15 -0.15 -8.62 16 15 H 0.11 3.14 7.15 -52.48 -0.38 2.76 16 16 C 0.03 0.82 5.51 -17.39 -0.10 0.72 16 17 N -0.87 -23.51 13.03 55.53 0.72 -22.78 16 18 Si 0.94 20.16 29.56 -169.99 -5.02 15.14 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 22 N -0.56 -6.60 6.15 -6.54 -0.04 -6.64 16 23 H 0.41 3.34 8.96 -40.82 -0.37 2.97 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.17 2.11 8.06 -52.49 -0.42 1.68 16 28 H 0.11 1.78 7.47 -51.93 -0.39 1.39 16 29 H 0.09 0.88 7.85 -51.93 -0.41 0.48 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.12 2.21 5.35 -51.93 -0.28 1.93 16 32 H 0.05 0.53 7.83 -51.93 -0.41 0.13 16 33 H 0.41 11.18 7.36 -40.82 -0.30 10.88 16 34 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 LS Contribution 302.53 15.07 4.56 4.56 Total: -1.00 -34.01 302.53 -5.61 -39.62 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -3.77 Total: 13.32 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: -1.51 Total: 18.23 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.02 Total: -62.78 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: 0.16 Total: -28.08 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.01 -5.61 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693469388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.173 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds