Wall clock time and date at job start Mon Mar 30 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34665 * 126.59180 * 2 1 4 4 N 1.34128 * 108.02058 * 179.97438 * 3 2 1 5 5 C 1.30497 * 109.25686 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.65016 * 180.26637 * 5 4 3 7 7 N 1.46496 * 109.46933 * 274.68706 * 6 5 4 8 8 C 1.46505 * 119.99842 * 269.99739 * 7 6 5 9 9 C 1.34780 * 120.00127 * 89.99985 * 7 6 5 10 10 O 1.21439 * 120.00183 * 356.46404 * 9 7 6 11 11 C 1.48835 * 119.99767 * 176.46288 * 9 7 6 12 12 O 1.21501 * 120.00254 * 5.93844 * 11 9 7 13 13 N 1.34785 * 119.99718 * 185.93264 * 11 9 7 14 14 C 1.36111 * 119.99571 * 180.02562 * 13 11 9 15 15 H 1.08005 * 120.00614 * 0.02562 * 14 13 11 16 16 C 1.39594 * 119.99757 * 180.02562 * 14 13 11 17 17 N 1.31017 * 119.99653 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00011 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47592 * 89.99725 * 18 16 14 20 20 H 1.48501 * 109.46825 * 209.99950 * 18 16 14 21 21 H 1.48498 * 109.46794 * 329.99412 * 18 16 14 22 22 N 1.35039 * 108.69908 * 359.97438 * 5 4 3 23 23 H 0.97005 * 126.39637 * 179.97438 * 22 5 4 24 24 H 1.09001 * 109.46417 * 270.03562 * 1 2 3 25 25 H 1.08994 * 109.47092 * 30.03426 * 1 2 3 26 26 H 1.08999 * 109.47259 * 150.04197 * 1 2 3 27 27 H 1.08000 * 125.99106 * 359.93970 * 3 2 1 28 28 H 1.09001 * 109.47276 * 34.68196 * 6 5 4 29 29 H 1.08998 * 109.47655 * 154.68823 * 6 5 4 30 30 H 1.09004 * 109.46778 * 95.99463 * 8 7 6 31 31 H 1.09008 * 109.47096 * 215.98772 * 8 7 6 32 32 H 1.08993 * 109.46982 * 335.99300 * 8 7 6 33 33 H 0.97002 * 119.99887 * 0.02562 * 13 11 9 34 34 H 0.97000 * 119.99580 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6541 0.0006 5 6 3.5968 -0.6508 0.0004 6 6 4.8318 -1.5145 0.0065 7 7 5.3037 -1.7015 -1.3677 8 6 4.8156 -2.8313 -2.1624 9 6 6.1869 -0.8342 -1.9008 10 8 6.5426 0.1378 -1.2656 11 6 6.7264 -1.0678 -3.2681 12 8 6.2916 -1.9779 -3.9456 13 7 7.6973 -0.2696 -3.7550 14 6 8.1902 -0.4829 -5.0056 15 1 7.8032 -1.2914 -5.6081 16 6 9.1961 0.3435 -5.5096 17 7 9.6652 1.3246 -4.7790 18 14 9.8722 0.0512 -7.2263 19 1 9.0807 0.8330 -8.2098 20 1 11.2922 0.4825 -7.2790 21 1 9.7814 -1.3941 -7.5545 22 7 2.3230 -1.0990 0.0002 23 1 2.0392 -2.0266 -0.0003 24 1 -0.3632 0.0006 1.0277 25 1 -0.3633 0.8896 -0.5143 26 1 -0.3634 -0.8903 -0.5132 27 1 1.9865 2.1117 -0.0009 28 1 5.6108 -1.0303 0.5954 29 1 4.5950 -2.4841 0.4445 30 1 3.9831 -2.5044 -2.7855 31 1 5.6199 -3.2037 -2.7969 32 1 4.4806 -3.6263 -1.4962 33 1 8.0446 0.4569 -3.2140 34 1 10.3639 1.8990 -5.1294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693469388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:09 Heat of formation + Delta-G solvation = -26.793721 kcal Electronic energy + Delta-G solvation = -19871.682085 eV Core-core repulsion = 16612.161767 eV Total energy + Delta-G solvation = -3259.520318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.09245 -41.36302 -39.12243 -37.14714 -35.96229 -33.80089 -33.46040 -32.81950 -30.00213 -28.13982 -27.22171 -26.24027 -23.95989 -22.14500 -21.56570 -20.80569 -20.04253 -18.47799 -18.33161 -17.70174 -17.02463 -16.67774 -16.29731 -15.78619 -15.62131 -15.30471 -14.88239 -14.72430 -14.41763 -14.00068 -13.75082 -13.65503 -13.52881 -13.34651 -13.23409 -12.98067 -12.88092 -12.54090 -12.09315 -11.99435 -11.62948 -11.01585 -10.88468 -10.27629 -10.01145 -9.85167 -9.20633 -8.64027 -6.09157 0.61524 0.90991 1.41213 1.47568 1.56258 1.71355 2.12626 2.20275 2.34987 2.40297 3.13268 3.16946 3.46020 3.91628 4.03296 4.10958 4.27886 4.34298 4.41251 4.56492 4.73666 4.75132 4.80855 5.10324 5.11465 5.26973 5.30341 5.49397 5.69415 5.77578 6.04410 6.34155 6.50845 6.79231 6.99540 7.17248 7.29817 7.81536 8.51933 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.032946 B = 0.004229 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.665085 B = 6620.117642 C = 6799.047562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.006 4.006 3 C -0.072 4.072 4 N -0.518 5.518 5 C 0.173 3.827 6 C 0.199 3.801 7 N -0.586 5.586 8 C 0.074 3.926 9 C 0.512 3.488 10 O -0.550 6.550 11 C 0.392 3.608 12 O -0.600 6.600 13 N -0.514 5.514 14 C -0.344 4.344 15 H 0.102 0.898 16 C -0.007 4.007 17 N -0.899 5.899 18 Si 1.011 2.989 19 H -0.267 1.267 20 H -0.267 1.267 21 H -0.261 1.261 22 N -0.544 5.544 23 H 0.434 0.566 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.174 0.826 28 H 0.095 0.905 29 H 0.149 0.851 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.398 0.602 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.837 -7.889 9.344 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 C -0.219 4.219 4 N -0.238 5.238 5 C -0.092 4.092 6 C 0.076 3.924 7 N -0.319 5.319 8 C -0.067 4.067 9 C 0.296 3.704 10 O -0.427 6.427 11 C 0.177 3.823 12 O -0.490 6.490 13 N -0.147 5.147 14 C -0.474 4.474 15 H 0.119 0.881 16 C -0.211 4.211 17 N -0.537 5.537 18 Si 0.832 3.168 19 H -0.192 1.192 20 H -0.192 1.192 21 H -0.185 1.185 22 N -0.150 5.150 23 H 0.276 0.724 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.191 0.809 28 H 0.114 0.886 29 H 0.167 0.833 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.232 0.768 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.071 -7.281 9.245 19.122 hybrid contribution -0.130 -0.011 -0.454 0.473 sum -15.201 -7.293 8.791 19.014 Atomic orbital electron populations 1.20359 0.83661 1.04681 1.04171 1.21877 0.96114 0.86328 1.08022 1.22548 0.88285 1.00217 1.10872 1.70266 1.24262 1.10390 1.18842 1.23681 0.87101 0.91080 1.07333 1.19998 0.90101 0.99620 0.82720 1.47657 1.42088 1.27599 1.14600 1.22387 1.01146 0.87138 0.96000 1.20275 0.80134 0.82768 0.87179 1.90727 1.60209 1.28966 1.62844 1.19555 0.86378 0.87382 0.88976 1.90440 1.63391 1.34011 1.61149 1.41687 1.30561 1.27144 1.15319 1.19993 1.19036 1.16379 0.91966 0.88060 1.26581 0.95804 0.94068 1.04652 1.69572 1.27282 1.17016 1.39789 0.84676 0.77586 0.79373 0.75155 1.19176 1.19189 1.18450 1.43068 1.05715 1.10203 1.56000 0.72424 0.89075 0.89169 0.89945 0.80884 0.88629 0.83287 0.94082 0.89165 0.87348 0.76767 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.44 71.24 0.74 -0.05 16 2 C -0.01 -0.12 7.24 40.95 0.30 0.17 16 3 C -0.07 -2.12 11.79 83.52 0.98 -1.14 16 4 N -0.52 -19.30 11.25 -188.14 -2.12 -21.42 16 5 C 0.17 5.10 7.73 138.13 1.07 6.16 16 6 C 0.20 5.37 6.04 85.63 0.52 5.89 16 7 N -0.59 -20.23 2.86 -853.42 -2.44 -22.67 16 8 C 0.07 2.15 9.58 127.77 1.22 3.37 16 9 C 0.51 23.71 7.71 87.08 0.67 24.38 16 10 O -0.55 -28.24 16.09 -3.52 -0.06 -28.30 16 11 C 0.39 20.58 7.70 87.08 0.67 21.25 16 12 O -0.60 -31.82 12.69 -3.72 -0.05 -31.86 16 13 N -0.51 -29.09 5.24 -308.85 -1.62 -30.71 16 14 C -0.34 -19.67 9.67 84.36 0.82 -18.85 16 15 H 0.10 5.86 7.15 -2.91 -0.02 5.84 16 16 C -0.01 -0.38 5.51 85.14 0.47 0.09 16 17 N -0.90 -49.80 13.03 21.77 0.28 -49.52 16 18 Si 1.01 41.44 29.56 68.60 2.03 43.47 16 19 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 22 N -0.54 -11.08 6.15 -174.61 -1.07 -12.15 16 23 H 0.43 5.03 8.96 -92.70 -0.83 4.20 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.17 4.48 8.06 -2.91 -0.02 4.46 16 28 H 0.10 2.96 7.47 -2.39 -0.02 2.95 16 29 H 0.15 2.20 7.85 -2.39 -0.02 2.19 16 30 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.09 3.24 5.35 -2.54 -0.01 3.23 16 32 H 0.11 1.85 7.83 -2.39 -0.02 1.83 16 33 H 0.40 23.20 7.36 -92.71 -0.68 22.51 16 34 H 0.29 14.61 8.30 -92.71 -0.77 13.84 16 Total: -1.00 -78.62 302.53 2.07 -76.55 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: -0.35 Total: 35.34 kcal Atomic # 6 Polarization: 33.81 SS G_CDS: 7.46 Total: 41.27 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -6.96 Total: -136.47 kcal Atomic # 8 Polarization: -60.06 SS G_CDS: -0.10 Total: -60.16 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -78.62 2.07 -76.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693469388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.757 kcal (2) G-P(sol) polarization free energy of solvation -78.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds