Wall clock time and date at job start Mon Mar 30 2020 04:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00056 * 2 1 4 4 C 1.53006 * 109.47327 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46840 * 65.00195 * 4 3 2 6 6 C 1.36870 * 120.00018 * 281.94946 * 5 4 3 7 7 H 1.07996 * 120.00173 * 315.08577 * 6 5 4 8 8 C 1.39046 * 120.00159 * 135.08286 * 6 5 4 9 9 N 1.31369 * 119.99903 * 337.81249 * 8 6 5 10 10 Si 1.86797 * 120.00218 * 157.81084 * 8 6 5 11 11 H 1.48497 * 109.47644 * 89.99995 * 10 8 6 12 12 H 1.48501 * 109.47613 * 210.00297 * 10 8 6 13 13 H 1.48503 * 109.47087 * 330.00168 * 10 8 6 14 14 C 1.34776 * 120.00173 * 101.95191 * 5 4 3 15 15 O 1.21592 * 119.99969 * 186.71599 * 14 5 4 16 16 C 1.47731 * 119.99817 * 6.71034 * 14 5 4 17 17 C 1.39640 * 120.54088 * 323.37915 * 16 14 5 18 18 N 1.31643 * 120.67956 * 179.97438 * 17 16 14 19 19 C 1.31917 * 121.94805 * 359.97438 * 18 17 16 20 20 C 1.38820 * 121.01655 * 0.02562 * 19 18 17 21 21 O 1.35921 * 120.40009 * 179.97438 * 20 19 18 22 22 C 1.38863 * 119.20113 * 359.97438 * 20 19 18 23 23 H 1.09003 * 109.46809 * 299.99643 * 1 2 3 24 24 H 1.08997 * 109.47106 * 60.00181 * 1 2 3 25 25 H 1.08998 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46957 * 60.00166 * 3 2 1 27 27 H 1.09003 * 109.47551 * 299.99922 * 3 2 1 28 28 H 1.09004 * 109.47057 * 305.00439 * 4 3 2 29 29 H 1.09000 * 109.47247 * 184.99857 * 4 3 2 30 30 H 0.97002 * 119.99673 * 185.04368 * 9 8 6 31 31 H 1.07997 * 119.66277 * 0.02562 * 17 16 14 32 32 H 1.08000 * 119.48841 * 180.02562 * 19 18 17 33 33 H 0.96707 * 114.00141 * 90.00293 * 21 20 19 34 34 H 1.07997 * 120.88562 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 3.8662 -0.7898 -1.4196 7 1 4.1660 -1.4590 -0.6267 8 6 3.3680 -1.3036 -2.6117 9 7 2.6148 -0.5554 -3.3855 10 14 3.7698 -3.0575 -3.1132 11 1 2.7352 -3.9760 -2.5737 12 1 3.7947 -3.1556 -4.5947 13 1 5.0991 -3.4356 -2.5697 14 6 4.4913 1.3260 -2.2362 15 8 4.7438 0.8318 -3.3181 16 6 4.7485 2.7618 -2.0018 17 6 3.8806 3.5184 -1.2118 18 7 4.1074 4.7978 -1.0007 19 6 5.1514 5.4163 -1.5182 20 6 6.0627 4.7370 -2.3151 21 8 7.1338 5.3869 -2.8423 22 6 5.8669 3.3856 -2.5671 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1765 0.0902 30 1 2.2073 -0.9353 -4.1796 31 1 3.0147 3.0490 -0.7688 32 1 5.2993 6.4674 -1.3187 33 1 7.9194 5.3724 -2.2784 34 1 6.5586 2.8307 -3.1836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700870459.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:40 Heat of formation + Delta-G solvation = -43.804031 kcal Electronic energy + Delta-G solvation = -20768.117119 eV Core-core repulsion = 17475.566427 eV Total energy + Delta-G solvation = -3292.550692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35889 -38.42056 -36.99706 -36.81891 -34.30876 -32.45215 -31.46854 -29.94206 -28.86516 -25.82787 -25.25274 -23.37683 -23.08543 -22.02969 -19.79087 -18.29811 -17.01950 -16.93523 -16.27714 -15.88206 -15.47266 -15.21017 -14.81835 -14.45944 -14.23174 -13.88569 -13.28162 -12.97841 -12.93107 -12.70529 -12.44363 -11.75268 -11.43981 -11.31296 -11.17807 -10.90966 -10.80573 -10.67546 -10.41581 -10.12750 -9.44590 -9.40287 -8.95373 -8.71401 -8.57381 -8.11944 -7.18808 -6.11440 -3.77745 1.10057 1.41639 3.32697 3.41870 3.43973 3.69736 4.04689 4.26238 4.45945 4.50330 4.76542 4.81884 5.07141 5.20485 5.29007 5.48351 5.62964 5.71880 5.79080 5.83397 5.87348 5.96543 6.03693 6.07288 6.20256 6.30023 6.43660 6.58451 6.72440 7.59403 7.65405 7.90792 8.11578 8.25140 8.98908 9.08945 9.59156 10.16959 10.97128 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.007532 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.644463 B = 3716.354948 C = 4810.214502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.347 6.347 3 C 0.052 3.948 4 C 0.080 3.920 5 N -0.425 5.425 6 C -0.327 4.327 7 H 0.083 0.917 8 C 0.080 3.920 9 N -0.816 5.816 10 Si 0.910 3.090 11 H -0.282 1.282 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.494 3.506 15 O -0.527 6.527 16 C -0.121 4.121 17 C 0.082 3.918 18 N -0.471 5.471 19 C 0.065 3.935 20 C 0.048 3.952 21 O -0.493 6.493 22 C -0.070 4.070 23 H 0.026 0.974 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.263 0.737 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.388 0.612 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 7.805 7.240 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.264 6.264 3 C -0.026 4.026 4 C -0.044 4.044 5 N -0.145 5.145 6 C -0.454 4.454 7 H 0.100 0.900 8 C -0.132 4.132 9 N -0.448 5.448 10 Si 0.737 3.263 11 H -0.209 1.209 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.281 3.719 15 O -0.406 6.406 16 C -0.128 4.128 17 C -0.075 4.075 18 N -0.181 5.181 19 C -0.093 4.093 20 C 0.002 3.998 21 O -0.301 6.301 22 C -0.097 4.097 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.190 0.810 32 H 0.173 0.827 33 H 0.243 0.757 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.106 7.956 6.507 10.338 hybrid contribution 0.620 -1.023 -0.488 1.292 sum 1.726 6.933 6.020 9.343 Atomic orbital electron populations 1.22609 0.83182 1.01846 0.98596 1.88175 1.17487 1.25902 1.94866 1.22896 0.95092 0.85979 0.98595 1.22204 0.92211 0.98954 0.91059 1.43114 1.52201 1.07065 1.12170 1.18881 1.44720 0.79597 1.02203 0.89961 1.25192 0.93339 0.98125 0.96536 1.69832 1.24858 1.36511 1.13619 0.86254 0.78936 0.83224 0.77879 1.20855 1.21101 1.19593 1.17662 0.83433 0.83968 0.86796 1.90650 1.54042 1.72580 1.23289 1.21636 0.95564 0.98022 0.97532 1.23701 0.99364 0.89148 0.95303 1.67665 1.18655 1.10373 1.21385 1.23046 0.91424 1.00424 0.94408 1.19380 0.91656 0.90911 0.97855 1.84850 1.21943 1.75882 1.47432 1.21950 0.97577 0.93138 0.97013 0.95578 0.94644 0.90453 0.94243 0.93438 0.91108 0.89543 0.92666 0.81009 0.82712 0.75682 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 101.05 1.11 1.69 16 2 O -0.35 -7.20 9.61 -35.23 -0.34 -7.54 16 3 C 0.05 0.97 5.22 37.16 0.19 1.16 16 4 C 0.08 1.55 5.34 -4.04 -0.02 1.52 16 5 N -0.43 -10.43 2.52 -115.92 -0.29 -10.72 16 6 C -0.33 -8.83 8.13 -15.00 -0.12 -8.95 16 7 H 0.08 2.17 7.92 -52.49 -0.42 1.75 16 8 C 0.08 2.23 4.25 -17.45 -0.07 2.16 16 9 N -0.82 -23.81 11.88 55.50 0.66 -23.15 16 10 Si 0.91 21.90 29.61 -169.99 -5.03 16.87 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.49 12.52 6.85 -12.38 -0.08 12.43 16 15 O -0.53 -15.58 14.53 5.28 0.08 -15.50 16 16 C -0.12 -2.50 5.43 -104.84 -0.57 -3.07 16 17 C 0.08 1.50 8.56 -17.11 -0.15 1.36 16 18 N -0.47 -7.88 10.34 -12.77 -0.13 -8.02 16 19 C 0.07 0.96 11.13 -17.30 -0.19 0.77 16 20 C 0.05 0.74 6.73 -39.13 -0.26 0.48 16 21 O -0.49 -6.22 13.52 -19.49 -0.26 -6.49 16 22 C -0.07 -1.28 9.72 -38.70 -0.38 -1.65 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.94 7.10 -51.93 -0.37 0.58 16 28 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 29 H 0.09 1.48 4.15 -51.93 -0.22 1.27 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.17 3.04 3.45 -52.49 -0.18 2.86 16 32 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.39 2.79 9.06 45.56 0.41 3.20 16 34 H 0.14 2.64 8.06 -52.49 -0.42 2.21 16 LS Contribution 292.54 15.07 4.41 4.41 Total: -1.00 -34.49 292.54 -4.32 -38.81 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -2.86 Total: 3.44 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.54 Total: 7.89 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.24 Total: -41.89 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.53 Total: -29.53 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.49 -4.32 -38.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700870459.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.992 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds