Wall clock time and date at job start Mon Mar 30 2020 04:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00056 * 2 1 4 4 C 1.53006 * 109.47327 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46840 * 65.00195 * 4 3 2 6 6 C 1.36870 * 120.00018 * 281.94946 * 5 4 3 7 7 H 1.07996 * 120.00173 * 315.08577 * 6 5 4 8 8 C 1.39046 * 120.00159 * 135.08286 * 6 5 4 9 9 N 1.31369 * 119.99903 * 337.81249 * 8 6 5 10 10 Si 1.86797 * 120.00218 * 157.81084 * 8 6 5 11 11 H 1.48497 * 109.47644 * 89.99995 * 10 8 6 12 12 H 1.48501 * 109.47613 * 210.00297 * 10 8 6 13 13 H 1.48503 * 109.47087 * 330.00168 * 10 8 6 14 14 C 1.34776 * 120.00173 * 101.95191 * 5 4 3 15 15 O 1.21592 * 119.99969 * 186.71599 * 14 5 4 16 16 C 1.47731 * 119.99817 * 6.71034 * 14 5 4 17 17 C 1.39640 * 120.54088 * 323.37915 * 16 14 5 18 18 N 1.31643 * 120.67956 * 179.97438 * 17 16 14 19 19 C 1.31917 * 121.94805 * 359.97438 * 18 17 16 20 20 C 1.38820 * 121.01655 * 0.02562 * 19 18 17 21 21 O 1.35921 * 120.40009 * 179.97438 * 20 19 18 22 22 C 1.38863 * 119.20113 * 359.97438 * 20 19 18 23 23 H 1.09003 * 109.46809 * 299.99643 * 1 2 3 24 24 H 1.08997 * 109.47106 * 60.00181 * 1 2 3 25 25 H 1.08998 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46957 * 60.00166 * 3 2 1 27 27 H 1.09003 * 109.47551 * 299.99922 * 3 2 1 28 28 H 1.09004 * 109.47057 * 305.00439 * 4 3 2 29 29 H 1.09000 * 109.47247 * 184.99857 * 4 3 2 30 30 H 0.97002 * 119.99673 * 185.04368 * 9 8 6 31 31 H 1.07997 * 119.66277 * 0.02562 * 17 16 14 32 32 H 1.08000 * 119.48841 * 180.02562 * 19 18 17 33 33 H 0.96707 * 114.00141 * 90.00293 * 21 20 19 34 34 H 1.07997 * 120.88562 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 3.8662 -0.7898 -1.4196 7 1 4.1660 -1.4590 -0.6267 8 6 3.3680 -1.3036 -2.6117 9 7 2.6148 -0.5554 -3.3855 10 14 3.7698 -3.0575 -3.1132 11 1 2.7352 -3.9760 -2.5737 12 1 3.7947 -3.1556 -4.5947 13 1 5.0991 -3.4356 -2.5697 14 6 4.4913 1.3260 -2.2362 15 8 4.7438 0.8318 -3.3181 16 6 4.7485 2.7618 -2.0018 17 6 3.8806 3.5184 -1.2118 18 7 4.1074 4.7978 -1.0007 19 6 5.1514 5.4163 -1.5182 20 6 6.0627 4.7370 -2.3151 21 8 7.1338 5.3869 -2.8423 22 6 5.8669 3.3856 -2.5671 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1765 0.0902 30 1 2.2073 -0.9353 -4.1796 31 1 3.0147 3.0490 -0.7688 32 1 5.2993 6.4674 -1.3187 33 1 7.9194 5.3724 -2.2784 34 1 6.5586 2.8307 -3.1836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700870459.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:39 Heat of formation + Delta-G solvation = -71.695107 kcal Electronic energy + Delta-G solvation = -20769.326567 eV Core-core repulsion = 17475.566427 eV Total energy + Delta-G solvation = -3293.760140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.79313 -40.02660 -38.47675 -38.12936 -36.15864 -34.27689 -33.03010 -31.40091 -30.42676 -27.39523 -26.88454 -24.99973 -24.43156 -23.57939 -21.47771 -19.72176 -18.56159 -18.39684 -17.82379 -17.36260 -16.95032 -16.87423 -16.32539 -15.98562 -15.79746 -15.65713 -14.87731 -14.49317 -14.41161 -14.22738 -13.93388 -13.38901 -13.12863 -12.87115 -12.66250 -12.61647 -12.55693 -12.25700 -12.14649 -11.82221 -10.97244 -10.84517 -10.69250 -10.34705 -10.06875 -9.81004 -9.16417 -8.17024 -5.86896 -0.25225 0.04203 1.38787 1.45766 1.52279 2.18003 2.37687 2.68857 2.85916 3.09084 3.20516 3.29586 3.46089 3.81300 3.86146 3.92541 4.25094 4.33788 4.37454 4.46103 4.48130 4.59869 4.67310 4.68198 4.91093 4.94558 5.00125 5.09896 5.45320 5.55897 6.22195 6.52952 6.67146 6.83137 7.02753 7.13880 7.63008 8.24115 8.91913 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.007532 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.644463 B = 3716.354948 C = 4810.214502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.055 3.945 4 C 0.078 3.922 5 N -0.438 5.438 6 C -0.341 4.341 7 H 0.081 0.919 8 C 0.035 3.965 9 N -0.855 5.855 10 Si 0.962 3.038 11 H -0.266 1.266 12 H -0.296 1.296 13 H -0.267 1.267 14 C 0.488 3.512 15 O -0.584 6.584 16 C -0.149 4.149 17 C 0.086 3.914 18 N -0.471 5.471 19 C 0.085 3.915 20 C 0.070 3.930 21 O -0.492 6.492 22 C -0.081 4.081 23 H 0.061 0.939 24 H 0.023 0.977 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.256 0.744 31 H 0.176 0.824 32 H 0.201 0.799 33 H 0.416 0.584 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.392 10.150 9.009 13.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.022 4.022 4 C -0.045 4.045 5 N -0.157 5.157 6 C -0.469 4.469 7 H 0.099 0.901 8 C -0.173 4.173 9 N -0.489 5.489 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.222 1.222 13 H -0.192 1.192 14 C 0.277 3.723 15 O -0.467 6.467 16 C -0.154 4.154 17 C -0.070 4.070 18 N -0.180 5.180 19 C -0.074 4.074 20 C 0.023 3.977 21 O -0.304 6.304 22 C -0.108 4.108 23 H 0.079 0.921 24 H 0.042 0.958 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.045 0.955 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.065 0.935 31 H 0.193 0.807 32 H 0.217 0.783 33 H 0.276 0.724 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.637 10.305 8.347 13.362 hybrid contribution 0.602 -1.496 -0.983 1.889 sum 2.239 8.808 7.365 11.698 Atomic orbital electron populations 1.22744 0.81315 1.02653 0.99686 1.88107 1.19722 1.27334 1.95141 1.22909 0.94148 0.85505 0.99681 1.22426 0.93269 0.99998 0.88805 1.43282 1.52195 1.06633 1.13574 1.19026 1.44549 0.81151 1.02158 0.90133 1.25907 0.93263 1.01381 0.96728 1.69943 1.26860 1.37959 1.14122 0.85444 0.79169 0.79917 0.76726 1.19136 1.22231 1.19192 1.18362 0.82053 0.85916 0.85976 1.90592 1.56173 1.74415 1.25511 1.21253 0.97916 0.95719 1.00558 1.23617 0.98907 0.89711 0.94770 1.67789 1.19355 1.09169 1.21709 1.23761 0.89576 1.02010 0.92014 1.19256 0.92512 0.89333 0.96578 1.84798 1.22486 1.74839 1.48283 1.22029 0.96948 0.94802 0.97012 0.92051 0.95792 0.89950 0.89666 0.95480 0.90266 0.87157 0.93479 0.80739 0.78265 0.72352 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 11.01 113.37 1.25 2.30 16 2 O -0.38 -15.88 9.61 -148.98 -1.43 -17.32 16 3 C 0.06 1.98 5.22 71.98 0.38 2.36 16 4 C 0.08 2.97 5.34 86.38 0.46 3.44 16 5 N -0.44 -21.96 2.52 -638.92 -1.61 -23.57 16 6 C -0.34 -18.96 8.13 84.10 0.68 -18.28 16 7 H 0.08 4.36 7.92 -2.91 -0.02 4.34 16 8 C 0.03 2.01 4.25 84.96 0.36 2.37 16 9 N -0.85 -52.20 11.88 21.68 0.26 -51.94 16 10 Si 0.96 46.42 29.61 68.60 2.03 48.45 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.49 25.55 6.85 86.75 0.59 26.15 16 15 O -0.58 -36.25 14.53 -4.01 -0.06 -36.31 16 16 C -0.15 -6.12 5.43 -20.01 -0.11 -6.23 16 17 C 0.09 3.02 8.56 85.06 0.73 3.75 16 18 N -0.47 -14.11 10.34 -194.33 -2.01 -16.12 16 19 C 0.08 2.11 11.13 84.82 0.94 3.05 16 20 C 0.07 1.90 6.73 22.56 0.15 2.06 16 21 O -0.49 -10.34 13.52 -92.66 -1.25 -11.60 16 22 C -0.08 -2.89 9.72 22.84 0.22 -2.67 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.03 1.08 7.10 -2.39 -0.02 1.06 16 28 H 0.08 2.85 8.13 -2.38 -0.02 2.83 16 29 H 0.11 3.63 4.15 -2.39 -0.01 3.62 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.18 5.95 3.45 -2.91 -0.01 5.94 16 32 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.42 4.03 9.06 -74.05 -0.67 3.36 16 34 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -78.46 292.54 2.06 -76.40 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.47 Total: 13.72 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 5.66 Total: 18.28 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -3.36 Total: -91.63 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -2.74 Total: -65.22 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -78.46 2.06 -76.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700870459.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.701 kcal (2) G-P(sol) polarization free energy of solvation -78.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds