Wall clock time and date at job start Mon Mar 30 2020 04:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 N 1.46502 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.36801 * 120.00381 * 279.19172 * 4 3 2 6 6 H 1.07999 * 119.99744 * 38.85256 * 5 4 3 7 7 C 1.39092 * 120.00162 * 218.85906 * 5 4 3 8 8 N 1.31334 * 119.99936 * 18.28038 * 7 5 4 9 9 Si 1.86804 * 119.99997 * 198.28296 * 7 5 4 10 10 H 1.48495 * 109.47014 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46900 * 120.00084 * 9 7 5 12 12 H 1.48498 * 109.47141 * 239.99545 * 9 7 5 13 13 C 1.34778 * 119.99591 * 99.18722 * 4 3 2 14 14 O 1.21557 * 119.99529 * 186.55604 * 13 4 3 15 15 C 1.48019 * 120.00317 * 6.55444 * 13 4 3 16 16 C 1.39822 * 120.86680 * 151.82465 * 15 13 4 17 17 C 1.38692 * 119.06240 * 180.02562 * 16 15 13 18 18 O 1.35687 * 119.57783 * 179.97438 * 17 16 15 19 19 N 1.32276 * 120.84780 * 0.02751 * 17 16 15 20 20 C 1.32280 * 121.91802 * 359.97239 * 19 17 16 21 21 O 1.35682 * 119.58062 * 179.97438 * 20 19 17 22 22 C 1.38695 * 120.84305 * 0.02562 * 20 19 17 23 23 H 1.09007 * 109.47297 * 300.00371 * 1 2 3 24 24 H 1.08996 * 109.47277 * 60.00225 * 1 2 3 25 25 H 1.09004 * 109.47284 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47236 * 239.99862 * 2 1 3 27 27 H 1.09008 * 109.46783 * 119.99323 * 2 1 3 28 28 H 1.08998 * 109.47241 * 59.99865 * 3 2 1 29 29 H 1.09000 * 109.47304 * 299.99669 * 3 2 1 30 30 H 0.97003 * 119.99827 * 184.90888 * 8 7 5 31 31 H 1.07997 * 120.46519 * 359.97438 * 16 15 13 32 32 H 0.96705 * 114.00536 * 270.02455 * 18 17 16 33 33 H 0.96706 * 114.00420 * 90.00208 * 21 20 19 34 34 H 1.08001 * 120.47120 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1886 1.2535 1.1704 6 1 3.8275 0.5415 1.8978 7 6 5.3485 1.9783 1.4230 8 7 5.5991 3.0742 0.7439 9 14 6.5500 1.3931 2.7282 10 1 6.0398 0.1426 3.3456 11 1 7.8719 1.1337 2.1034 12 1 6.6932 2.4381 3.7735 13 6 4.1793 1.6288 -1.1514 14 8 5.3889 1.5107 -1.1735 15 6 3.4469 1.9770 -2.3897 16 6 4.0614 2.7215 -3.4012 17 6 3.3401 3.0271 -4.5457 18 8 3.9259 3.7494 -5.5337 19 7 2.0880 2.6243 -4.6861 20 6 1.4715 1.9186 -3.7524 21 8 0.1858 1.5305 -3.9457 22 6 2.1223 1.5710 -2.5780 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 6.4403 3.5407 0.8691 31 1 5.0830 3.0545 -3.2925 32 1 3.8129 4.7055 -5.4421 33 1 0.0953 0.6712 -4.3799 34 1 1.6131 0.9950 -1.8195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701162613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:36 Heat of formation + Delta-G solvation = -68.720065 kcal Electronic energy + Delta-G solvation = -20745.462082 eV Core-core repulsion = 17451.830949 eV Total energy + Delta-G solvation = -3293.631132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.04781 -40.23451 -39.00050 -37.08471 -37.04100 -34.92399 -33.38945 -32.85418 -30.66959 -27.71126 -26.96339 -24.77407 -24.49596 -22.48428 -21.86212 -20.19403 -19.23243 -18.52005 -18.11650 -17.60313 -17.43373 -16.66705 -16.22601 -15.98434 -15.79765 -15.31544 -15.24577 -14.53388 -13.87117 -13.65538 -13.52821 -13.35018 -13.21885 -13.01886 -12.75480 -12.59766 -12.46529 -12.30926 -12.14552 -11.95272 -11.59486 -11.00030 -10.84031 -10.77202 -10.20944 -9.77786 -9.25002 -8.29727 -6.06043 -0.29620 -0.20202 1.37783 1.44501 1.53339 2.06705 2.15819 2.29820 2.59799 2.97058 3.11426 3.27428 3.70542 3.83499 3.91675 4.07355 4.24973 4.32333 4.42842 4.50322 4.60451 4.73651 4.80573 5.03715 5.09503 5.22762 5.25482 5.31822 5.43032 5.56679 6.07494 6.44533 6.66156 6.74638 6.87303 7.06476 7.50596 8.16728 8.76769 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019273 B = 0.007611 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.445402 B = 3678.038375 C = 4953.741852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.062 3.938 4 N -0.443 5.443 5 C -0.354 4.354 6 H 0.095 0.905 7 C 0.013 3.987 8 N -0.861 5.861 9 Si 0.974 3.026 10 H -0.253 1.253 11 H -0.294 1.294 12 H -0.274 1.274 13 C 0.487 3.513 14 O -0.581 6.581 15 C -0.040 4.040 16 C -0.163 4.163 17 C 0.337 3.663 18 O -0.481 6.481 19 N -0.534 5.534 20 C 0.340 3.660 21 O -0.474 6.474 22 C -0.201 4.201 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.263 0.737 31 H 0.133 0.867 32 H 0.422 0.578 33 H 0.424 0.576 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.328 -2.732 -5.772 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.060 4.060 4 N -0.162 5.162 5 C -0.481 4.481 6 H 0.112 0.888 7 C -0.194 4.194 8 N -0.496 5.496 9 Si 0.799 3.201 10 H -0.176 1.176 11 H -0.220 1.220 12 H -0.200 1.200 13 C 0.276 3.724 14 O -0.463 6.463 15 C -0.051 4.051 16 C -0.185 4.185 17 C 0.159 3.841 18 O -0.291 6.291 19 N -0.265 5.265 20 C 0.160 3.840 21 O -0.284 6.284 22 C -0.222 4.222 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.284 0.716 33 H 0.286 0.714 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.066 -2.412 -6.416 13.017 hybrid contribution 1.545 0.020 1.158 1.931 sum -9.521 -2.392 -5.258 11.136 Atomic orbital electron populations 1.21731 0.92491 1.03061 1.02874 1.21887 0.97871 0.95553 1.02186 1.22824 0.81185 0.98416 1.03604 1.43413 1.05125 1.62367 1.05283 1.19502 1.10111 1.21880 0.96631 0.88763 1.26129 1.00847 0.93200 0.99265 1.69940 1.23223 1.14492 1.41930 0.85191 0.78067 0.79075 0.77800 1.17622 1.22044 1.19967 1.18170 0.87032 0.84125 0.83073 1.90556 1.15721 1.54911 1.85125 1.20522 0.94252 0.95382 0.94987 1.22123 1.02426 1.01462 0.92526 1.18386 0.85992 0.93988 0.85763 1.84725 1.73601 1.24548 1.46273 1.66441 1.10731 1.15427 1.33884 1.18567 0.84919 0.92598 0.87883 1.84740 1.17811 1.43830 1.82018 1.23460 0.93576 1.04515 1.00679 0.92157 0.91239 0.90843 0.92018 0.92195 0.91611 0.88104 0.92762 0.84914 0.71613 0.71398 0.78853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.83 71.98 0.71 -2.20 16 2 C -0.14 -3.96 5.25 30.59 0.16 -3.80 16 3 C 0.06 2.27 4.85 86.38 0.42 2.69 16 4 N -0.44 -21.81 2.56 -638.66 -1.64 -23.44 16 5 C -0.35 -19.01 9.22 84.12 0.78 -18.24 16 6 H 0.09 4.75 7.90 -2.91 -0.02 4.72 16 7 C 0.01 0.70 4.39 84.97 0.37 1.07 16 8 N -0.86 -51.45 11.43 21.69 0.25 -51.20 16 9 Si 0.97 44.40 29.60 68.60 2.03 46.43 16 10 H -0.25 -10.66 7.11 99.48 0.71 -9.96 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 13 C 0.49 25.36 6.64 86.84 0.58 25.94 16 14 O -0.58 -35.57 14.38 -3.90 -0.06 -35.62 16 15 C -0.04 -1.69 5.64 -19.92 -0.11 -1.80 16 16 C -0.16 -6.43 9.62 22.76 0.22 -6.21 16 17 C 0.34 11.32 7.73 84.73 0.66 11.97 16 18 O -0.48 -13.40 13.56 -90.06 -1.22 -14.62 16 19 N -0.53 -17.37 10.38 -422.21 -4.38 -21.76 16 20 C 0.34 10.04 7.73 84.73 0.66 10.69 16 21 O -0.47 -10.34 13.56 -90.00 -1.22 -11.56 16 22 C -0.20 -6.62 7.57 22.76 0.17 -6.45 16 23 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.07 1.24 7.79 -2.39 -0.02 1.22 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 1.78 7.26 -2.39 -0.02 1.77 16 27 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.07 2.42 8.11 -2.39 -0.02 2.40 16 29 H 0.10 3.45 3.83 -3.60 -0.01 3.44 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.13 5.62 7.96 -2.91 -0.02 5.60 16 32 H 0.42 7.18 9.06 -74.05 -0.67 6.50 16 33 H 0.42 4.62 9.06 -74.05 -0.67 3.95 16 34 H 0.20 5.67 2.31 -2.91 -0.01 5.66 16 Total: -1.00 -76.78 291.29 -1.81 -78.59 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.17 Total: 19.52 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 4.60 Total: 13.67 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -5.77 Total: -96.40 kcal Atomic # 8 Polarization: -59.30 SS G_CDS: -2.50 Total: -61.80 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -76.78 -1.81 -78.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701162613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.867 kcal (2) G-P(sol) polarization free energy of solvation -76.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds