Wall clock time and date at job start Mon Mar 30 2020 04:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47363 * 2 1 4 4 N 1.46506 * 109.46892 * 119.99767 * 2 1 3 5 5 C 1.36809 * 119.99731 * 120.78926 * 4 2 1 6 6 H 1.07998 * 119.99697 * 215.65448 * 5 4 2 7 7 C 1.39093 * 119.99946 * 35.64906 * 5 4 2 8 8 N 1.31323 * 120.00414 * 10.66913 * 7 5 4 9 9 Si 1.86799 * 119.99822 * 190.67218 * 7 5 4 10 10 H 1.48504 * 109.47562 * 89.99745 * 9 7 5 11 11 H 1.48499 * 109.47438 * 209.99815 * 9 7 5 12 12 H 1.48508 * 109.47302 * 329.99986 * 9 7 5 13 13 C 1.34777 * 120.00128 * 300.78466 * 4 2 1 14 14 O 1.21559 * 119.99866 * 4.11033 * 13 4 2 15 15 C 1.48016 * 119.99636 * 184.10586 * 13 4 2 16 16 C 1.39815 * 120.87336 * 23.10495 * 15 13 4 17 17 C 1.38700 * 119.06756 * 179.70684 * 16 15 13 18 18 O 1.35681 * 119.57781 * 180.29310 * 17 16 15 19 19 N 1.32277 * 120.84221 * 0.57083 * 17 16 15 20 20 C 1.32285 * 121.91903 * 359.72229 * 19 17 16 21 21 O 1.35682 * 119.58091 * 180.02562 * 20 19 17 22 22 C 1.38693 * 120.83855 * 359.97421 * 20 19 17 23 23 H 1.09004 * 109.46682 * 306.39434 * 1 2 3 24 24 H 1.08997 * 109.47193 * 66.39037 * 1 2 3 25 25 H 1.08999 * 109.47588 * 186.39858 * 1 2 3 26 26 H 1.08997 * 109.46927 * 239.99672 * 2 1 3 27 27 H 1.09005 * 109.47306 * 182.87769 * 3 2 1 28 28 H 1.09008 * 109.47016 * 302.87169 * 3 2 1 29 29 H 1.09002 * 109.47717 * 62.87474 * 3 2 1 30 30 H 0.97002 * 120.00220 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.46559 * 359.97438 * 16 15 13 32 32 H 0.96706 * 113.99885 * 270.27284 * 18 17 16 33 33 H 0.96700 * 113.99680 * 269.98006 * 21 20 19 34 34 H 1.08004 * 120.46559 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8181 -1.7934 1.0708 6 1 2.7281 -2.6084 1.7737 7 6 3.7469 -1.8651 0.0379 8 7 4.0063 -0.8012 -0.6870 9 14 4.6254 -3.4747 -0.3182 10 1 3.8396 -4.2601 -1.3036 11 1 5.9731 -3.1909 -0.8732 12 1 4.7617 -4.2530 0.9393 13 6 1.6797 -0.2394 2.4203 14 8 0.9094 0.6943 2.5322 15 6 2.2457 -0.8810 3.6282 16 6 3.4464 -1.5944 3.5657 17 6 3.9459 -2.1755 4.7219 18 8 5.1134 -2.8651 4.6743 19 7 3.2959 -2.0704 5.8691 20 6 2.1544 -1.4092 5.9682 21 8 1.5278 -1.3309 7.1691 22 6 1.5906 -0.7941 4.8603 23 1 -0.3633 0.6098 0.8273 24 1 -0.3633 0.4116 -0.9416 25 1 -0.3634 -1.0212 0.1145 26 1 1.8933 -0.5139 -0.8899 27 1 3.1289 1.4428 -0.0516 28 1 1.6352 1.9709 -0.8632 29 1 1.7195 1.9413 0.9146 30 1 4.6537 -0.8513 -1.4075 31 1 3.9797 -1.6881 2.6313 32 1 5.0069 -3.8057 4.4762 33 1 0.9009 -2.0488 7.3331 34 1 0.6586 -0.2554 4.9482 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701163304.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:40 Heat of formation + Delta-G solvation = -62.204121 kcal Electronic energy + Delta-G solvation = -20878.001594 eV Core-core repulsion = 17584.653015 eV Total energy + Delta-G solvation = -3293.348580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36189 -38.83064 -37.63296 -35.76794 -35.20741 -32.85459 -31.98091 -30.53574 -28.96190 -26.14986 -25.37981 -23.88112 -22.91501 -21.17254 -19.51139 -18.83237 -17.72048 -17.10407 -16.37095 -15.71792 -15.48175 -15.13178 -14.55410 -14.41967 -14.08946 -13.63084 -13.15450 -12.73580 -12.43026 -12.09479 -11.99842 -11.96569 -11.82632 -11.30505 -11.23219 -11.08664 -10.96880 -10.68720 -10.44933 -10.29774 -10.03214 -9.38468 -9.26105 -8.95913 -8.48155 -8.32027 -7.74216 -6.63268 -4.29058 1.28435 1.38333 2.96636 3.05294 3.08169 3.35125 3.76566 3.85735 4.27713 4.38272 4.56092 4.79934 5.42627 5.48026 5.63559 5.85497 6.01341 6.08431 6.24309 6.26740 6.44831 6.59794 6.70798 6.80108 6.84482 6.90238 6.94363 7.13095 7.34877 7.46380 7.60471 7.65659 7.89610 8.17031 8.20212 8.77660 9.25895 9.67341 10.37710 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.009185 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.175183 B = 3047.719119 C = 4419.361706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.156 3.844 3 C -0.150 4.150 4 N -0.413 5.413 5 C -0.348 4.348 6 H 0.099 0.901 7 C 0.044 3.956 8 N -0.846 5.846 9 Si 0.919 3.081 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.265 1.265 13 C 0.497 3.503 14 O -0.590 6.590 15 C -0.026 4.026 16 C -0.152 4.152 17 C 0.307 3.693 18 O -0.480 6.480 19 N -0.527 5.527 20 C 0.307 3.693 21 O -0.482 6.482 22 C -0.154 4.154 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.275 0.725 31 H 0.192 0.808 32 H 0.395 0.605 33 H 0.394 0.606 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 -4.890 2.994 6.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.053 3.947 3 C -0.208 4.208 4 N -0.130 5.130 5 C -0.476 4.476 6 H 0.116 0.884 7 C -0.164 4.164 8 N -0.480 5.480 9 Si 0.744 3.256 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.189 1.189 13 C 0.286 3.714 14 O -0.477 6.477 15 C -0.037 4.037 16 C -0.174 4.174 17 C 0.129 3.871 18 O -0.286 6.286 19 N -0.258 5.258 20 C 0.129 3.871 21 O -0.288 6.288 22 C -0.177 4.177 23 H 0.091 0.909 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.208 0.792 32 H 0.252 0.748 33 H 0.250 0.750 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.497 -3.700 3.721 5.457 hybrid contribution -0.175 -1.397 -0.975 1.713 sum -1.671 -5.098 2.746 6.026 Atomic orbital electron populations 1.22277 0.97580 1.01265 1.01515 1.20835 0.90928 0.93331 0.89595 1.21963 1.02521 0.95985 1.00307 1.43519 1.41606 1.24742 1.03107 1.19695 1.15573 0.96212 1.16094 0.88372 1.25485 0.96226 0.98187 0.96517 1.69868 1.31436 1.27645 1.19096 0.86050 0.78793 0.81301 0.79432 1.20001 1.20443 1.18925 1.17972 0.85476 0.84678 0.83286 1.90587 1.39695 1.30999 1.86394 1.20371 0.94113 0.94716 0.94461 1.23763 0.96040 0.96626 1.00936 1.18769 0.86013 0.95542 0.86812 1.84800 1.25090 1.25612 1.93062 1.66172 1.09064 1.20782 1.29761 1.18409 0.88702 0.95159 0.84829 1.84815 1.58853 1.51271 1.33819 1.22137 1.02408 1.01915 0.91211 0.90940 0.93549 0.93790 0.88039 0.91225 0.94299 0.92541 0.91409 0.79176 0.74826 0.74994 0.83666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 8.99 37.16 0.33 -3.04 16 2 C 0.16 3.48 2.27 -67.93 -0.15 3.33 16 3 C -0.15 -3.27 9.03 37.15 0.34 -2.93 16 4 N -0.41 -9.61 2.50 -108.74 -0.27 -9.88 16 5 C -0.35 -7.86 6.17 -15.01 -0.09 -7.95 16 6 H 0.10 2.12 6.00 -52.49 -0.31 1.80 16 7 C 0.04 0.99 4.97 -17.45 -0.09 0.90 16 8 N -0.85 -19.83 10.22 55.50 0.57 -19.26 16 9 Si 0.92 17.33 29.57 -169.99 -5.03 12.30 16 10 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 11 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 12 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 13 C 0.50 11.60 6.91 -12.25 -0.08 11.51 16 14 O -0.59 -14.62 12.96 5.31 0.07 -14.55 16 15 C -0.03 -0.54 5.64 -104.71 -0.59 -1.13 16 16 C -0.15 -3.04 7.82 -38.82 -0.30 -3.34 16 17 C 0.31 5.71 7.73 -17.19 -0.13 5.58 16 18 O -0.48 -7.82 13.56 -18.75 -0.25 -8.08 16 19 N -0.53 -9.96 10.38 -13.46 -0.14 -10.10 16 20 C 0.31 5.46 7.73 -17.19 -0.13 5.33 16 21 O -0.48 -7.15 13.56 -18.75 -0.25 -7.40 16 22 C -0.15 -2.90 9.61 -38.82 -0.37 -3.27 16 23 H 0.07 1.55 6.20 -51.93 -0.32 1.23 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.10 2.38 6.04 -51.93 -0.31 2.07 16 27 H 0.07 1.63 7.23 -51.93 -0.38 1.25 16 28 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.06 1.30 6.29 -51.93 -0.33 0.97 16 30 H 0.28 6.14 8.31 -40.82 -0.34 5.80 16 31 H 0.19 4.00 5.01 -52.49 -0.26 3.74 16 32 H 0.40 4.35 9.06 45.56 0.41 4.76 16 33 H 0.39 3.60 9.06 45.56 0.41 4.01 16 34 H 0.15 2.60 7.90 -52.48 -0.41 2.19 16 LS Contribution 286.46 15.07 4.32 4.32 Total: -1.00 -28.69 286.46 -4.18 -32.87 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -1.91 Total: 14.80 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -1.28 Total: 4.98 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.16 Total: -39.24 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.44 Total: -30.03 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.69 -4.18 -32.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701163304.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.337 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds