Wall clock time and date at job start Mon Mar 30 2020 04:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47363 * 2 1 4 4 N 1.46506 * 109.46892 * 119.99767 * 2 1 3 5 5 C 1.36809 * 119.99731 * 120.78926 * 4 2 1 6 6 H 1.07998 * 119.99697 * 215.65448 * 5 4 2 7 7 C 1.39093 * 119.99946 * 35.64906 * 5 4 2 8 8 N 1.31323 * 120.00414 * 10.66913 * 7 5 4 9 9 Si 1.86799 * 119.99822 * 190.67218 * 7 5 4 10 10 H 1.48504 * 109.47562 * 89.99745 * 9 7 5 11 11 H 1.48499 * 109.47438 * 209.99815 * 9 7 5 12 12 H 1.48508 * 109.47302 * 329.99986 * 9 7 5 13 13 C 1.34777 * 120.00128 * 300.78466 * 4 2 1 14 14 O 1.21559 * 119.99866 * 4.11033 * 13 4 2 15 15 C 1.48016 * 119.99636 * 184.10586 * 13 4 2 16 16 C 1.39815 * 120.87336 * 23.10495 * 15 13 4 17 17 C 1.38700 * 119.06756 * 179.70684 * 16 15 13 18 18 O 1.35681 * 119.57781 * 180.29310 * 17 16 15 19 19 N 1.32277 * 120.84221 * 0.57083 * 17 16 15 20 20 C 1.32285 * 121.91903 * 359.72229 * 19 17 16 21 21 O 1.35682 * 119.58091 * 180.02562 * 20 19 17 22 22 C 1.38693 * 120.83855 * 359.97421 * 20 19 17 23 23 H 1.09004 * 109.46682 * 306.39434 * 1 2 3 24 24 H 1.08997 * 109.47193 * 66.39037 * 1 2 3 25 25 H 1.08999 * 109.47588 * 186.39858 * 1 2 3 26 26 H 1.08997 * 109.46927 * 239.99672 * 2 1 3 27 27 H 1.09005 * 109.47306 * 182.87769 * 3 2 1 28 28 H 1.09008 * 109.47016 * 302.87169 * 3 2 1 29 29 H 1.09002 * 109.47717 * 62.87474 * 3 2 1 30 30 H 0.97002 * 120.00220 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.46559 * 359.97438 * 16 15 13 32 32 H 0.96706 * 113.99885 * 270.27284 * 18 17 16 33 33 H 0.96700 * 113.99680 * 269.98006 * 21 20 19 34 34 H 1.08004 * 120.46559 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8181 -1.7934 1.0708 6 1 2.7281 -2.6084 1.7737 7 6 3.7469 -1.8651 0.0379 8 7 4.0063 -0.8012 -0.6870 9 14 4.6254 -3.4747 -0.3182 10 1 3.8396 -4.2601 -1.3036 11 1 5.9731 -3.1909 -0.8732 12 1 4.7617 -4.2530 0.9393 13 6 1.6797 -0.2394 2.4203 14 8 0.9094 0.6943 2.5322 15 6 2.2457 -0.8810 3.6282 16 6 3.4464 -1.5944 3.5657 17 6 3.9459 -2.1755 4.7219 18 8 5.1134 -2.8651 4.6743 19 7 3.2959 -2.0704 5.8691 20 6 2.1544 -1.4092 5.9682 21 8 1.5278 -1.3309 7.1691 22 6 1.5906 -0.7941 4.8603 23 1 -0.3633 0.6098 0.8273 24 1 -0.3633 0.4116 -0.9416 25 1 -0.3634 -1.0212 0.1145 26 1 1.8933 -0.5139 -0.8899 27 1 3.1289 1.4428 -0.0516 28 1 1.6352 1.9709 -0.8632 29 1 1.7195 1.9413 0.9146 30 1 4.6537 -0.8513 -1.4075 31 1 3.9797 -1.6881 2.6313 32 1 5.0069 -3.8057 4.4762 33 1 0.9009 -2.0488 7.3331 34 1 0.6586 -0.2554 4.9482 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701163304.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:39 Heat of formation + Delta-G solvation = -87.387166 kcal Electronic energy + Delta-G solvation = -20879.093613 eV Core-core repulsion = 17584.653015 eV Total energy + Delta-G solvation = -3294.440599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.86310 -40.49440 -38.92278 -37.23147 -36.86206 -34.49484 -33.64525 -32.18315 -30.42203 -27.85683 -27.10867 -25.47476 -24.36168 -22.79334 -21.09823 -20.44810 -19.03225 -18.69485 -17.87016 -17.27978 -16.91899 -16.69135 -16.24694 -15.99256 -15.61056 -15.21592 -14.82056 -14.45678 -14.08239 -13.63473 -13.54983 -13.37756 -13.28792 -12.94707 -12.78555 -12.70221 -12.38324 -12.23862 -12.01597 -11.99174 -11.77359 -10.96052 -10.80421 -10.64270 -10.19416 -9.76448 -9.49338 -8.33445 -6.05230 -0.23899 -0.04923 1.47036 1.52025 1.61736 1.91437 2.24410 2.29386 2.72219 2.79199 3.08052 3.20452 3.88755 4.00039 4.14113 4.33652 4.47708 4.54555 4.60472 4.70330 4.85807 4.89885 5.04402 5.11687 5.23187 5.27746 5.34325 5.50086 5.56873 5.69607 5.92458 6.42515 6.51353 6.75231 6.80847 7.03993 7.50085 7.91692 8.68082 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.009185 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.175183 B = 3047.719119 C = 4419.361706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 C -0.137 4.137 4 N -0.421 5.421 5 C -0.359 4.359 6 H 0.107 0.893 7 C 0.010 3.990 8 N -0.874 5.874 9 Si 0.978 3.022 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.246 1.246 13 C 0.484 3.516 14 O -0.614 6.614 15 C -0.042 4.042 16 C -0.161 4.161 17 C 0.319 3.681 18 O -0.482 6.482 19 N -0.536 5.536 20 C 0.324 3.676 21 O -0.481 6.481 22 C -0.157 4.157 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.276 0.724 31 H 0.179 0.821 32 H 0.420 0.580 33 H 0.421 0.579 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 -6.319 3.786 7.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 C -0.195 4.195 4 N -0.137 5.137 5 C -0.486 4.486 6 H 0.124 0.876 7 C -0.196 4.196 8 N -0.509 5.509 9 Si 0.801 3.199 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.169 1.169 13 C 0.274 3.726 14 O -0.503 6.503 15 C -0.053 4.053 16 C -0.183 4.183 17 C 0.141 3.859 18 O -0.292 6.292 19 N -0.267 5.267 20 C 0.145 3.855 21 O -0.291 6.291 22 C -0.180 4.180 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.196 0.804 32 H 0.280 0.720 33 H 0.282 0.718 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.419 -5.175 4.528 7.021 hybrid contribution -0.212 -0.950 -1.148 1.505 sum -1.630 -6.126 3.380 7.184 Atomic orbital electron populations 1.22155 0.95874 1.01161 1.02301 1.20899 0.92283 0.93097 0.89030 1.21819 1.01092 0.96126 1.00456 1.43728 1.41614 1.24943 1.03394 1.19970 1.15853 0.96241 1.16540 0.87579 1.26211 0.96559 1.00829 0.96020 1.69973 1.32040 1.29352 1.19551 0.85131 0.77075 0.77909 0.79758 1.20133 1.21120 1.16928 1.18379 0.85414 0.84695 0.84086 1.90552 1.40781 1.32038 1.86915 1.20281 0.94964 0.95725 0.94296 1.23528 0.96014 0.97621 1.01095 1.18697 0.85999 0.94951 0.86287 1.84743 1.23932 1.27550 1.92989 1.66343 1.09508 1.21203 1.29627 1.18406 0.88282 0.93548 0.85214 1.84758 1.59406 1.52896 1.32016 1.22169 1.02626 1.02276 0.90889 0.92422 0.90915 0.93764 0.89251 0.93299 0.91937 0.94181 0.91440 0.80438 0.71955 0.71752 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.24 8.99 71.98 0.65 -5.59 16 2 C 0.15 6.74 2.27 44.99 0.10 6.84 16 3 C -0.14 -6.06 9.03 71.98 0.65 -5.41 16 4 N -0.42 -19.80 2.50 -616.22 -1.54 -21.34 16 5 C -0.36 -16.19 6.17 84.12 0.52 -15.68 16 6 H 0.11 4.53 6.00 -2.91 -0.02 4.51 16 7 C 0.01 0.42 4.97 84.97 0.42 0.85 16 8 N -0.87 -41.37 10.22 21.69 0.22 -41.15 16 9 Si 0.98 34.74 29.57 68.60 2.03 36.77 16 10 H -0.28 -9.82 7.11 99.48 0.71 -9.11 16 11 H -0.29 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.25 -7.91 7.11 99.48 0.71 -7.20 16 13 C 0.48 22.93 6.91 86.84 0.60 23.53 16 14 O -0.61 -31.00 12.96 -3.90 -0.05 -31.05 16 15 C -0.04 -1.76 5.64 -19.92 -0.11 -1.87 16 16 C -0.16 -6.32 7.82 22.76 0.18 -6.14 16 17 C 0.32 11.29 7.73 84.74 0.66 11.95 16 18 O -0.48 -14.53 13.56 -89.99 -1.22 -15.75 16 19 N -0.54 -18.99 10.38 -422.20 -4.38 -23.38 16 20 C 0.32 10.83 7.73 84.73 0.66 11.49 16 21 O -0.48 -12.86 13.56 -90.00 -1.22 -14.08 16 22 C -0.16 -5.75 9.61 22.76 0.22 -5.53 16 23 H 0.06 2.47 6.20 -2.38 -0.01 2.45 16 24 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.09 4.23 6.04 -2.39 -0.01 4.22 16 27 H 0.05 2.33 7.23 -2.38 -0.02 2.31 16 28 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.04 1.87 6.29 -2.39 -0.02 1.86 16 30 H 0.28 12.40 8.31 -92.71 -0.77 11.63 16 31 H 0.18 7.44 5.01 -2.91 -0.01 7.43 16 32 H 0.42 7.94 9.06 -74.05 -0.67 7.27 16 33 H 0.42 6.25 9.06 -74.06 -0.67 5.58 16 34 H 0.15 5.27 7.90 -2.91 -0.02 5.24 16 Total: -1.00 -60.74 286.46 -1.79 -62.54 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.17 Total: 33.01 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 4.54 Total: 14.43 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -5.70 Total: -85.87 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -2.49 Total: -60.88 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Total: -60.74 -1.79 -62.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701163304.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.850 kcal (2) G-P(sol) polarization free energy of solvation -60.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds