Wall clock time and date at job start Mon Mar 30 2020 04:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46966 * 2 1 4 4 H 1.09006 * 109.47362 * 305.37453 * 3 2 1 5 5 C 1.50700 * 109.46868 * 185.37766 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79726 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79838 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47239 * 65.37606 * 3 2 1 14 14 C 1.34775 * 120.00116 * 274.99976 * 13 3 2 15 15 O 1.21510 * 120.00048 * 359.97438 * 14 13 3 16 16 C 1.48178 * 120.00130 * 179.97438 * 14 13 3 17 17 C 1.39717 * 120.86238 * 359.71865 * 16 14 13 18 18 C 1.38739 * 119.08066 * 179.70963 * 17 16 14 19 19 O 1.35678 * 119.58956 * 180.29730 * 18 17 16 20 20 N 1.32258 * 120.83138 * 0.57789 * 18 17 16 21 21 C 1.32262 * 121.89888 * 359.71700 * 20 18 17 22 22 O 1.35679 * 119.58326 * 179.97438 * 21 20 18 23 23 C 1.38735 * 120.83353 * 359.97438 * 21 20 18 24 24 H 1.09009 * 109.47424 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47649 * 59.99584 * 1 2 3 26 26 H 1.09005 * 109.47114 * 299.99793 * 1 2 3 27 27 H 1.08992 * 109.47086 * 120.00253 * 2 1 3 28 28 H 1.09005 * 109.47114 * 240.00207 * 2 1 3 29 29 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 30 30 H 0.97003 * 119.99975 * 94.99493 * 13 3 2 31 31 H 1.08004 * 120.46422 * 0.02562 * 17 16 14 32 32 H 0.96707 * 114.00114 * 270.28216 * 19 18 17 33 33 H 0.96705 * 114.00562 * 269.98088 * 22 21 20 34 34 H 1.08004 * 120.46026 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6001 1.9834 -0.8380 5 6 3.5410 1.4445 -0.1332 6 1 4.1542 1.8170 0.6742 7 6 4.1316 0.9711 -1.2855 8 7 3.3876 0.6476 -2.3206 9 14 5.9885 0.7892 -1.3767 10 1 6.3862 -0.5218 -0.8037 11 1 6.4240 0.8624 -2.7945 12 1 6.6315 1.8824 -0.6043 13 7 1.6601 2.0947 1.2555 14 6 0.4436 2.6613 1.3795 15 8 -0.3381 2.6316 0.4496 16 6 0.0592 3.3205 2.6496 17 6 0.9415 3.3601 3.7322 18 6 0.5457 3.9924 4.9020 19 8 1.3966 4.0423 5.9576 20 7 -0.6528 4.5425 5.0031 21 6 -1.5184 4.5207 4.0032 22 8 -2.7357 5.0993 4.1584 23 6 -1.1972 3.9137 2.7978 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8031 0.3148 -3.1315 30 1 2.2842 2.1187 1.9977 31 1 1.9202 2.9093 3.6578 32 1 1.3175 3.2918 6.5624 33 1 -3.4144 4.5020 4.5016 34 1 -1.9088 3.8991 1.9854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701164717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:09 Heat of formation + Delta-G solvation = -113.105056 kcal Electronic energy + Delta-G solvation = -19941.656384 eV Core-core repulsion = 16646.100574 eV Total energy + Delta-G solvation = -3295.555810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.99455 -40.53726 -39.01970 -37.27595 -36.86075 -34.52136 -33.80880 -32.58123 -30.64725 -29.02401 -26.07541 -24.82803 -24.40348 -22.42003 -21.39572 -20.46284 -19.16368 -18.75255 -18.07052 -17.72339 -17.08251 -16.89885 -16.64372 -16.29239 -15.95941 -15.49956 -15.01889 -14.59710 -14.09096 -13.66516 -13.47045 -13.39587 -13.31751 -13.23904 -12.92677 -12.62801 -12.35750 -12.20960 -12.09042 -11.63989 -11.21281 -11.09210 -11.08691 -10.61152 -10.53527 -9.94716 -9.74490 -8.18660 -6.32738 -0.50286 -0.24746 1.46931 1.47218 1.56634 1.72326 2.06731 2.29761 2.49197 2.60722 2.97000 3.13809 3.61934 3.78453 3.82195 4.22204 4.30916 4.48032 4.54176 4.54606 4.72722 4.90611 5.05675 5.19109 5.25160 5.40568 5.46776 5.59441 5.74867 5.86332 6.06352 6.39903 6.67802 6.71715 6.74079 6.82879 7.28194 7.43340 8.89511 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.004934 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.774691 B = 5673.351630 C = 6404.213885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.114 4.114 3 C 0.275 3.725 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.074 0.926 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.265 1.265 13 N -0.689 5.689 14 C 0.542 3.458 15 O -0.568 6.568 16 C -0.055 4.055 17 C -0.157 4.157 18 C 0.339 3.661 19 O -0.480 6.480 20 N -0.530 5.530 21 C 0.338 3.662 22 O -0.482 6.482 23 C -0.146 4.146 24 H 0.049 0.951 25 H 0.027 0.973 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.265 0.735 30 H 0.405 0.595 31 H 0.170 0.830 32 H 0.427 0.573 33 H 0.426 0.574 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 1.629 15.618 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.153 4.153 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.092 0.908 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.338 5.338 14 C 0.328 3.672 15 O -0.449 6.449 16 C -0.066 4.066 17 C -0.179 4.179 18 C 0.160 3.840 19 O -0.291 6.291 20 N -0.261 5.261 21 C 0.159 3.841 22 O -0.292 6.292 23 C -0.168 4.168 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.241 0.759 31 H 0.187 0.813 32 H 0.289 0.711 33 H 0.288 0.712 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.311 2.906 15.078 16.602 hybrid contribution 0.872 -1.180 -0.576 1.576 sum -5.439 1.726 14.502 15.584 Atomic orbital electron populations 1.21708 0.96693 0.99542 1.00481 1.21713 0.94071 0.98684 1.00828 1.18500 0.94061 0.89357 0.80891 0.97494 1.21525 0.91192 1.43408 1.02659 0.90787 1.25723 1.03012 0.94676 0.94695 1.70106 1.37409 1.43921 1.03877 0.85443 0.79389 0.79023 0.77010 1.19484 1.21594 1.18934 1.46192 1.14696 1.54931 1.18001 1.18414 0.82645 0.79021 0.87107 1.90754 1.52006 1.60640 1.41472 1.20181 0.94849 0.97859 0.93668 1.22450 1.01987 1.01014 0.92441 1.18541 0.85444 0.91669 0.88339 1.84784 1.54719 1.52362 1.37219 1.66448 1.04790 1.19596 1.35245 1.18467 0.87251 0.90857 0.87519 1.84769 1.16454 1.40963 1.87040 1.22234 0.97559 0.97725 0.99301 0.93201 0.95378 0.93548 0.93037 0.92512 0.92602 0.75864 0.81282 0.71110 0.71191 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.52 71.98 0.61 -4.71 16 2 C -0.11 -5.23 5.49 30.59 0.17 -5.06 16 3 C 0.27 13.37 2.11 44.25 0.09 13.46 16 4 H 0.01 0.42 7.55 -2.38 -0.02 0.40 16 5 C -0.55 -27.77 8.67 25.60 0.22 -27.55 16 6 H 0.07 3.47 7.73 -2.91 -0.02 3.45 16 7 C 0.02 1.03 5.19 84.65 0.44 1.46 16 8 N -0.92 -51.36 12.00 21.45 0.26 -51.11 16 9 Si 0.97 40.80 29.54 68.60 2.03 42.82 16 10 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 13 N -0.69 -26.56 4.98 -448.68 -2.24 -28.80 16 14 C 0.54 20.43 6.38 86.89 0.55 20.99 16 15 O -0.57 -25.63 13.58 -3.75 -0.05 -25.68 16 16 C -0.05 -1.59 5.90 -19.92 -0.12 -1.71 16 17 C -0.16 -3.67 9.54 22.75 0.22 -3.46 16 18 C 0.34 7.70 7.73 84.75 0.66 8.35 16 19 O -0.48 -8.55 13.56 -89.96 -1.22 -9.77 16 20 N -0.53 -13.41 10.38 -422.19 -4.38 -17.79 16 21 C 0.34 8.21 7.73 84.75 0.66 8.86 16 22 O -0.48 -9.47 13.56 -89.97 -1.22 -10.69 16 23 C -0.15 -3.91 9.60 22.75 0.22 -3.70 16 24 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.03 1.28 7.87 -2.39 -0.02 1.27 16 26 H 0.05 1.86 5.64 -2.38 -0.01 1.84 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 2.94 6.64 -2.38 -0.02 2.92 16 29 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.40 12.85 6.66 -92.71 -0.62 12.23 16 31 H 0.17 3.24 6.53 -2.91 -0.02 3.22 16 32 H 0.43 2.77 9.06 -74.05 -0.67 2.10 16 33 H 0.43 3.49 9.06 -74.05 -0.67 2.82 16 34 H 0.15 4.17 7.74 -2.91 -0.02 4.15 16 Total: -1.00 -70.38 294.87 -3.88 -74.27 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.78 Total: 19.80 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 3.72 Total: 6.95 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -6.36 Total: -97.69 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -2.49 Total: -46.14 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Total: -70.38 -3.88 -74.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701164717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.839 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds