Wall clock time and date at job start Mon Mar 30 2020 04:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34775 * 120.00282 * 84.99902 * 13 3 2 15 15 O 1.21516 * 119.99862 * 359.97438 * 14 13 3 16 16 C 1.48173 * 120.00174 * 180.02562 * 14 13 3 17 17 C 1.39725 * 120.86039 * 359.71540 * 16 14 13 18 18 C 1.38740 * 119.07582 * 179.71255 * 17 16 14 19 19 O 1.35685 * 119.58301 * 180.29671 * 18 17 16 20 20 N 1.32261 * 120.83060 * 0.57745 * 18 17 16 21 21 C 1.32254 * 121.90353 * 359.71780 * 20 18 17 22 22 O 1.35686 * 119.58327 * 180.02562 * 21 20 18 23 23 C 1.38744 * 120.83324 * 359.97438 * 21 20 18 24 24 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 25 25 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 27 27 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 28 28 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 29 29 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 30 30 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 31 31 H 1.07990 * 120.46210 * 359.97438 * 17 16 14 32 32 H 0.96698 * 113.99649 * 270.27822 * 19 18 17 33 33 H 0.96703 * 113.99845 * 269.97725 * 22 21 20 34 34 H 1.07998 * 120.45654 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6599 -1.3861 15 8 -0.3368 2.6305 -0.4591 16 6 0.0681 3.3176 -2.6583 17 6 0.9584 3.3661 -3.7341 18 6 0.5617 3.9861 -4.9101 19 8 1.4158 4.0338 -5.9633 20 7 -0.6365 4.5361 -5.0157 21 6 -1.5050 4.5163 -4.0185 22 8 -2.7219 5.0947 -4.1784 23 6 -1.1878 3.9105 -2.8112 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8787 0.5738 0.4634 30 1 2.2909 2.1165 -1.9977 31 1 1.9400 2.9235 -3.6527 32 1 1.9884 4.8130 -5.9703 33 1 -2.7500 6.0279 -3.9263 34 1 -1.9015 3.8982 -2.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701164722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:12 Heat of formation + Delta-G solvation = -81.504303 kcal Electronic energy + Delta-G solvation = -20018.653918 eV Core-core repulsion = 16724.468419 eV Total energy + Delta-G solvation = -3294.185498 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99316 -39.23822 -38.20550 -36.30526 -35.40432 -33.10240 -32.38535 -31.31684 -29.69250 -27.42547 -24.72563 -23.58174 -22.42517 -21.21809 -19.83110 -19.34511 -18.31602 -17.80695 -17.07665 -16.79880 -16.05772 -15.64084 -15.37311 -14.90174 -14.65168 -13.90780 -13.41311 -12.98458 -12.69849 -12.56284 -12.54694 -12.39689 -12.31693 -11.79658 -11.55015 -10.89166 -10.80711 -10.55133 -10.14934 -10.01422 -9.90831 -9.78214 -9.44488 -9.20051 -9.04658 -8.40698 -8.26891 -6.67294 -4.30738 0.53176 0.65703 2.71124 3.11277 3.35280 3.40092 3.53896 3.58686 3.70197 3.82158 4.37126 4.66249 4.77964 4.82408 5.05033 5.10680 5.18140 5.56918 5.86104 5.98510 6.02173 6.03585 6.18941 6.60258 6.71349 6.83005 6.93840 7.06006 7.20757 7.26683 7.31112 7.52258 7.55543 8.14920 8.25387 8.54020 8.75552 9.36564 10.71712 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027451 B = 0.005124 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.744699 B = 5463.100463 C = 6061.110669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.247 3.753 4 H 0.047 0.953 5 C -0.625 4.625 6 H 0.063 0.937 7 C 0.046 3.954 8 N -0.891 5.891 9 Si 1.033 2.967 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.283 1.283 13 N -0.687 5.687 14 C 0.542 3.458 15 O -0.533 6.533 16 C -0.046 4.046 17 C -0.165 4.165 18 C 0.332 3.668 19 O -0.477 6.477 20 N -0.515 5.515 21 C 0.329 3.671 22 O -0.477 6.477 23 C -0.141 4.141 24 H 0.047 0.953 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.271 0.729 30 H 0.394 0.606 31 H 0.152 0.848 32 H 0.403 0.597 33 H 0.402 0.598 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.282 7.858 -9.358 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C 0.144 3.856 4 H 0.065 0.935 5 C -0.663 4.663 6 H 0.081 0.919 7 C -0.161 4.161 8 N -0.522 5.522 9 Si 0.860 3.140 10 H -0.209 1.209 11 H -0.193 1.193 12 H -0.209 1.209 13 N -0.335 5.335 14 C 0.326 3.674 15 O -0.412 6.412 16 C -0.057 4.057 17 C -0.187 4.187 18 C 0.153 3.847 19 O -0.284 6.284 20 N -0.245 5.245 21 C 0.150 3.850 22 O -0.284 6.284 23 C -0.163 4.163 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.228 0.772 31 H 0.169 0.831 32 H 0.261 0.739 33 H 0.260 0.740 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.327 6.781 -8.162 14.807 hybrid contribution 0.858 0.897 -1.279 1.782 sum -9.469 7.678 -9.442 15.419 Atomic orbital electron populations 1.21906 0.97321 0.99121 1.01948 1.22219 0.93791 0.99474 1.01382 1.19233 0.96074 0.88689 0.81582 0.93502 1.22011 0.89440 1.49905 1.04930 0.91910 1.25637 0.96834 0.91875 1.01801 1.70834 1.10484 1.39782 1.31133 0.84195 0.76402 0.77532 0.75916 1.20908 1.19275 1.20870 1.46272 1.13881 1.54793 1.18517 1.17997 0.83341 0.79787 0.86276 1.90763 1.50755 1.59663 1.39984 1.20513 0.93746 0.96490 0.94923 1.22378 1.02004 1.02248 0.92039 1.18504 0.86661 0.93832 0.85727 1.84823 1.50570 1.48108 1.44916 1.66329 1.03600 1.21170 1.33447 1.18533 0.84685 0.94605 0.87138 1.84821 1.24433 1.29995 1.89122 1.22236 0.96976 0.98893 0.98158 0.93445 0.94876 0.92793 0.93000 0.91881 0.91853 0.77216 0.83082 0.73905 0.73970 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.53 37.16 0.32 -2.54 16 2 C -0.13 -2.78 5.03 -26.73 -0.13 -2.92 16 3 C 0.25 5.60 1.78 -69.08 -0.12 5.48 16 4 H 0.05 1.15 5.99 -51.93 -0.31 0.84 16 5 C -0.63 -16.06 8.97 -34.44 -0.31 -16.37 16 6 H 0.06 1.68 7.96 -52.49 -0.42 1.26 16 7 C 0.05 1.25 5.25 -17.82 -0.09 1.16 16 8 N -0.89 -25.59 13.70 55.43 0.76 -24.83 16 9 Si 1.03 24.06 26.33 -169.99 -4.48 19.59 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -5.91 5.88 56.52 0.33 -5.57 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.69 -13.01 4.98 -55.77 -0.28 -13.28 16 14 C 0.54 9.77 6.39 -12.18 -0.08 9.69 16 15 O -0.53 -11.01 13.57 5.35 0.07 -10.94 16 16 C -0.05 -0.67 5.90 -104.71 -0.62 -1.28 16 17 C -0.16 -2.08 9.54 -38.84 -0.37 -2.45 16 18 C 0.33 4.16 7.74 -17.18 -0.13 4.02 16 19 O -0.48 -5.02 13.56 -18.76 -0.25 -5.27 16 20 N -0.52 -7.00 10.38 -13.45 -0.14 -7.14 16 21 C 0.33 4.17 7.74 -17.18 -0.13 4.03 16 22 O -0.48 -4.99 13.56 -18.76 -0.25 -5.24 16 23 C -0.14 -1.87 9.60 -38.84 -0.37 -2.24 16 24 H 0.05 0.92 5.63 -51.93 -0.29 0.63 16 25 H 0.03 0.57 8.14 -51.94 -0.42 0.15 16 26 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.40 5.64 -51.93 -0.29 1.11 16 29 H 0.27 7.70 8.73 -40.82 -0.36 7.34 16 30 H 0.39 6.57 6.66 -40.82 -0.27 6.30 16 31 H 0.15 1.68 6.53 -52.49 -0.34 1.33 16 32 H 0.40 2.08 9.06 45.56 0.41 2.50 16 33 H 0.40 2.00 9.06 45.56 0.41 2.41 16 34 H 0.16 2.02 7.74 -52.49 -0.41 1.62 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -32.90 289.81 -4.24 -37.13 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -1.98 Total: 9.05 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.05 Total: -3.43 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.34 Total: -45.25 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.44 Total: -21.45 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -4.48 Total: 19.59 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.90 -4.24 -37.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701164722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.370 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds