Wall clock time and date at job start Mon Mar 30 2020 04:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34775 * 120.00282 * 84.99902 * 13 3 2 15 15 O 1.21516 * 119.99862 * 359.97438 * 14 13 3 16 16 C 1.48173 * 120.00174 * 180.02562 * 14 13 3 17 17 C 1.39725 * 120.86039 * 359.71540 * 16 14 13 18 18 C 1.38740 * 119.07582 * 179.71255 * 17 16 14 19 19 O 1.35685 * 119.58301 * 180.29671 * 18 17 16 20 20 N 1.32261 * 120.83060 * 0.57745 * 18 17 16 21 21 C 1.32254 * 121.90353 * 359.71780 * 20 18 17 22 22 O 1.35686 * 119.58327 * 180.02562 * 21 20 18 23 23 C 1.38744 * 120.83324 * 359.97438 * 21 20 18 24 24 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 25 25 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 27 27 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 28 28 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 29 29 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 30 30 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 31 31 H 1.07990 * 120.46210 * 359.97438 * 17 16 14 32 32 H 0.96698 * 113.99649 * 270.27822 * 19 18 17 33 33 H 0.96703 * 113.99845 * 269.97725 * 22 21 20 34 34 H 1.07998 * 120.45654 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6599 -1.3861 15 8 -0.3368 2.6305 -0.4591 16 6 0.0681 3.3176 -2.6583 17 6 0.9584 3.3661 -3.7341 18 6 0.5617 3.9861 -4.9101 19 8 1.4158 4.0338 -5.9633 20 7 -0.6365 4.5361 -5.0157 21 6 -1.5050 4.5163 -4.0185 22 8 -2.7219 5.0947 -4.1784 23 6 -1.1878 3.9105 -2.8112 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8787 0.5738 0.4634 30 1 2.2909 2.1165 -1.9977 31 1 1.9400 2.9235 -3.6527 32 1 1.9884 4.8130 -5.9703 33 1 -2.7500 6.0279 -3.9263 34 1 -1.9015 3.8982 -2.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701164722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:12 Heat of formation + Delta-G solvation = -113.144494 kcal Electronic energy + Delta-G solvation = -20020.025939 eV Core-core repulsion = 16724.468419 eV Total energy + Delta-G solvation = -3295.557520 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.04666 -40.63936 -39.05170 -37.37735 -36.95056 -34.62651 -34.03216 -32.78744 -30.69106 -29.20703 -25.99540 -24.59765 -24.18107 -22.54396 -21.44380 -20.66332 -19.50908 -19.19801 -18.25727 -17.95778 -17.07229 -17.01722 -16.68754 -16.36924 -15.55651 -15.52657 -15.07906 -14.52298 -14.40199 -14.22376 -13.73120 -13.53363 -13.42300 -13.37525 -12.66433 -12.51228 -12.38935 -12.32764 -11.75110 -11.56252 -11.29720 -11.15652 -11.12889 -10.67293 -10.46865 -9.98628 -9.90433 -8.79657 -6.42623 -0.55309 -0.28728 1.49632 1.50835 1.66051 1.71648 1.99800 2.27779 2.44545 2.55350 2.93288 2.98832 3.52356 3.73705 3.77432 4.17004 4.26610 4.31050 4.38895 4.46167 4.56332 4.82887 4.87431 5.08916 5.15193 5.18555 5.26759 5.53263 5.55664 5.66305 6.02656 6.35999 6.52751 6.64174 6.67546 6.68246 7.18129 7.32293 8.58875 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027451 B = 0.005124 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.744699 B = 5463.100463 C = 6061.110669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.251 3.749 4 H 0.031 0.969 5 C -0.619 4.619 6 H 0.044 0.956 7 C 0.003 3.997 8 N -0.923 5.923 9 Si 1.066 2.934 10 H -0.275 1.275 11 H -0.250 1.250 12 H -0.282 1.282 13 N -0.689 5.689 14 C 0.546 3.454 15 O -0.561 6.561 16 C -0.056 4.056 17 C -0.160 4.160 18 C 0.338 3.662 19 O -0.481 6.481 20 N -0.529 5.529 21 C 0.338 3.662 22 O -0.481 6.481 23 C -0.142 4.142 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.261 0.739 30 H 0.404 0.596 31 H 0.164 0.836 32 H 0.426 0.574 33 H 0.426 0.574 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 8.389 -10.255 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.147 3.853 4 H 0.049 0.951 5 C -0.656 4.656 6 H 0.062 0.938 7 C -0.199 4.199 8 N -0.557 5.557 9 Si 0.888 3.112 10 H -0.201 1.201 11 H -0.174 1.174 12 H -0.207 1.207 13 N -0.338 5.338 14 C 0.332 3.668 15 O -0.441 6.441 16 C -0.067 4.067 17 C -0.182 4.182 18 C 0.159 3.841 19 O -0.292 6.292 20 N -0.260 5.260 21 C 0.159 3.841 22 O -0.291 6.291 23 C -0.164 4.164 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.240 0.760 31 H 0.181 0.819 32 H 0.288 0.712 33 H 0.289 0.711 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.747 7.364 -9.096 16.582 hybrid contribution 1.289 0.831 -1.145 1.914 sum -10.458 8.195 -10.240 16.775 Atomic orbital electron populations 1.21788 0.95609 1.00509 1.01376 1.22141 0.95248 0.98261 1.01133 1.18930 0.93819 0.89713 0.82844 0.95099 1.22182 0.91175 1.48259 1.04001 0.93785 1.26696 0.96946 0.91561 1.04673 1.70931 1.11644 1.42500 1.30640 0.83767 0.76284 0.77861 0.73308 1.20102 1.17442 1.20730 1.46054 1.14840 1.55159 1.17708 1.18353 0.82356 0.78927 0.87133 1.90742 1.51388 1.60580 1.41373 1.20152 0.94919 0.97803 0.93803 1.22427 1.02145 1.02024 0.91601 1.18535 0.86684 0.92997 0.85848 1.84777 1.50679 1.49785 1.43983 1.66447 1.04124 1.21644 1.33829 1.18506 0.84916 0.94101 0.86547 1.84771 1.23232 1.32048 1.89091 1.22248 0.96572 0.98909 0.98655 0.93527 0.92479 0.93824 0.92662 0.92777 0.92949 0.76015 0.81861 0.71157 0.71145 0.82230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.53 71.98 0.61 -4.45 16 2 C -0.13 -5.38 5.03 30.59 0.15 -5.23 16 3 C 0.25 11.23 1.78 44.25 0.08 11.31 16 4 H 0.03 1.50 5.99 -2.38 -0.01 1.49 16 5 C -0.62 -31.91 8.97 25.60 0.23 -31.68 16 6 H 0.04 2.39 7.96 -2.91 -0.02 2.37 16 7 C 0.00 0.18 5.25 84.65 0.44 0.62 16 8 N -0.92 -53.88 13.70 21.45 0.29 -53.58 16 9 Si 1.07 48.30 26.33 68.60 1.81 50.11 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.25 -10.57 5.88 99.48 0.59 -9.98 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.69 -25.52 4.98 -448.65 -2.24 -27.76 16 14 C 0.55 19.13 6.39 86.88 0.56 19.69 16 15 O -0.56 -22.69 13.57 -3.76 -0.05 -22.74 16 16 C -0.06 -1.55 5.90 -19.92 -0.12 -1.66 16 17 C -0.16 -3.74 9.54 22.75 0.22 -3.52 16 18 C 0.34 7.69 7.74 84.75 0.66 8.34 16 19 O -0.48 -8.86 13.56 -90.04 -1.22 -10.08 16 20 N -0.53 -13.14 10.38 -422.17 -4.38 -17.52 16 21 C 0.34 7.82 7.74 84.75 0.66 8.47 16 22 O -0.48 -8.85 13.56 -90.05 -1.22 -10.07 16 23 C -0.14 -3.53 9.60 22.75 0.22 -3.32 16 24 H 0.05 1.73 5.63 -2.38 -0.01 1.72 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.04 1.71 7.88 -2.39 -0.02 1.69 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 2.34 5.64 -2.39 -0.01 2.32 16 29 H 0.26 15.23 8.73 -92.71 -0.81 14.42 16 30 H 0.40 13.13 6.66 -92.71 -0.62 12.52 16 31 H 0.16 3.31 6.53 -2.92 -0.02 3.29 16 32 H 0.43 3.21 9.06 -74.06 -0.67 2.54 16 33 H 0.43 3.07 9.06 -74.06 -0.67 2.39 16 34 H 0.16 3.87 7.74 -2.91 -0.02 3.85 16 Total: -1.00 -69.46 289.81 -4.24 -73.70 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.93 Total: 19.36 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 3.71 Total: -1.42 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -6.33 Total: -98.86 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -2.49 Total: -42.90 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 1.81 Total: 50.11 kcal Total: -69.46 -4.24 -73.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701164722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.441 kcal (2) G-P(sol) polarization free energy of solvation -69.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds