Wall clock time and date at job start Mon Mar 30 2020 04:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.46887 * 2 1 4 4 C 1.46498 * 120.00156 * 277.65101 * 3 2 1 5 5 C 1.50700 * 109.47433 * 270.00047 * 4 3 2 6 6 H 1.08003 * 119.99844 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99908 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99967 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46740 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47429 * 119.99442 * 9 7 5 12 12 H 1.48497 * 109.47232 * 239.99819 * 9 7 5 13 13 C 1.34774 * 119.99473 * 97.65647 * 3 2 1 14 14 O 1.21512 * 119.99685 * 185.82594 * 13 3 2 15 15 C 1.48178 * 120.00511 * 5.82495 * 13 3 2 16 16 C 1.39724 * 120.86291 * 151.55026 * 15 13 3 17 17 C 1.38739 * 119.07531 * 180.02562 * 16 15 13 18 18 O 1.35682 * 119.58162 * 179.97438 * 17 16 15 19 19 N 1.32258 * 120.83479 * 0.02562 * 17 16 15 20 20 C 1.32251 * 121.90047 * 0.02562 * 19 17 16 21 21 O 1.35684 * 119.58316 * 179.97438 * 20 19 17 22 22 C 1.38739 * 120.83639 * 0.02562 * 20 19 17 23 23 H 1.09001 * 109.47292 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46939 * 299.99246 * 1 2 3 25 25 H 1.08998 * 109.47609 * 59.99279 * 1 2 3 26 26 H 1.09000 * 109.46939 * 240.00754 * 2 1 3 27 27 H 1.08995 * 109.47852 * 120.00258 * 2 1 3 28 28 H 1.08999 * 109.47222 * 30.00863 * 4 3 2 29 29 H 1.09002 * 109.46589 * 150.00418 * 4 3 2 30 30 H 0.97004 * 119.99883 * 180.02562 * 8 7 5 31 31 H 1.07996 * 120.45901 * 0.02562 * 16 15 13 32 32 H 0.96700 * 113.99869 * 270.01758 * 18 17 16 33 33 H 0.96697 * 114.00500 * 90.00052 * 21 20 19 34 34 H 1.08003 * 120.46532 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1031 2.1282 -1.2574 5 6 3.4598 1.9151 -1.8778 6 1 4.1861 1.2857 -1.3849 7 6 3.7739 2.5234 -3.0745 8 7 2.8893 3.2894 -3.6749 9 14 5.4554 2.2586 -3.8439 10 1 6.2600 1.3600 -2.9777 11 1 5.2946 1.6398 -5.1842 12 1 6.1479 3.5650 -3.9817 13 6 2.3894 1.9647 1.1568 14 8 2.6934 3.1411 1.1738 15 6 2.4268 1.1717 2.4080 16 6 3.3092 1.5020 3.4398 17 6 3.3134 0.7339 4.5951 18 8 4.1664 1.0451 5.6033 19 7 2.4972 -0.2986 4.7257 20 6 1.6487 -0.6437 3.7718 21 8 0.8328 -1.7121 3.9554 22 6 1.5829 0.0723 2.5853 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.3312 1.7764 -1.9418 29 1 1.9568 3.1901 -1.0597 30 1 3.1101 3.7171 -4.5170 31 1 3.9785 2.3436 3.3394 32 1 5.0258 0.6061 5.5411 33 1 -0.0166 -1.4932 4.3625 34 1 0.8874 -0.2145 1.8104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701165022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:19 Heat of formation + Delta-G solvation = -45.550296 kcal Electronic energy + Delta-G solvation = -20218.074193 eV Core-core repulsion = 16925.447777 eV Total energy + Delta-G solvation = -3292.626416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05498 -39.09575 -38.12880 -36.13074 -35.76004 -33.25545 -32.26493 -30.61907 -29.43413 -27.49298 -24.66884 -23.68704 -23.05825 -22.38563 -20.07021 -18.37703 -18.27582 -17.33074 -16.57174 -16.47343 -16.17177 -15.45439 -15.15556 -15.08565 -14.32601 -14.18752 -13.79204 -13.10577 -12.70435 -12.47162 -12.40272 -12.14495 -11.85684 -11.78324 -11.44243 -11.29470 -10.98570 -10.87982 -10.66662 -10.22678 -9.93692 -9.85731 -9.69245 -9.20430 -8.78132 -8.51728 -7.85475 -6.12933 -4.18418 0.69249 0.75399 3.00785 3.07347 3.24907 3.32524 3.35278 3.46171 3.74411 4.10487 4.36928 4.58171 4.78810 4.89120 5.11860 5.21812 5.27604 5.32097 5.43906 5.51871 5.65380 5.86495 5.96786 6.11824 6.12332 6.39048 6.91614 7.16935 7.30235 7.37496 7.38425 7.66459 7.82657 8.11830 8.17641 8.70163 8.88830 9.47122 10.95233 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023277 B = 0.005468 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.591014 B = 5119.318491 C = 5743.756311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.071 3.929 3 N -0.580 5.580 4 C 0.244 3.756 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.545 3.455 14 O -0.526 6.526 15 C -0.042 4.042 16 C -0.141 4.141 17 C 0.328 3.672 18 O -0.478 6.478 19 N -0.518 5.518 20 C 0.325 3.675 21 O -0.478 6.478 22 C -0.196 4.196 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.156 0.844 32 H 0.402 0.598 33 H 0.401 0.599 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.885 -9.088 12.465 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.052 4.052 3 N -0.310 5.310 4 C 0.125 3.875 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.331 3.669 14 O -0.403 6.403 15 C -0.053 4.053 16 C -0.163 4.163 17 C 0.149 3.851 18 O -0.285 6.285 19 N -0.248 5.248 20 C 0.147 3.853 21 O -0.285 6.285 22 C -0.217 4.217 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.173 0.827 32 H 0.260 0.740 33 H 0.259 0.741 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.734 -8.779 12.953 16.087 hybrid contribution 0.923 0.162 -1.072 1.424 sum -2.811 -8.617 11.881 14.944 Atomic orbital electron populations 1.22293 0.96251 1.02161 1.02901 1.22298 0.93995 0.84562 1.04352 1.48184 1.61048 1.13389 1.08419 1.19401 0.97365 0.92855 0.77848 1.21445 0.99437 1.30150 1.05964 0.92307 1.24929 0.97429 0.94777 0.96842 1.69938 1.34473 1.31156 1.17540 0.86425 0.83843 0.78113 0.78952 1.19787 1.20873 1.20780 1.17948 0.79315 0.86867 0.82793 1.90776 1.48685 1.15322 1.85481 1.20524 0.94736 0.94434 0.95613 1.22234 1.00789 1.02180 0.91089 1.18525 0.91259 0.89184 0.86094 1.84798 1.27888 1.69199 1.46593 1.66312 1.07929 1.16843 1.33690 1.18567 0.91250 0.87151 0.88364 1.84801 1.30737 1.29616 1.83311 1.23471 1.03300 0.94858 1.00078 0.91368 0.92484 0.91041 0.89670 0.89012 0.94461 0.93395 0.92638 0.82675 0.73997 0.74120 0.80052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.11 37.15 0.34 -1.87 16 2 C 0.07 1.10 5.58 -4.04 -0.02 1.07 16 3 N -0.58 -11.83 2.46 -176.05 -0.43 -12.26 16 4 C 0.24 6.13 5.22 -5.19 -0.03 6.10 16 5 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 9 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.55 11.23 7.51 -12.18 -0.09 11.14 16 14 O -0.53 -12.92 16.31 5.36 0.09 -12.83 16 15 C -0.04 -0.68 5.62 -104.70 -0.59 -1.27 16 16 C -0.14 -2.12 9.62 -38.84 -0.37 -2.49 16 17 C 0.33 4.54 7.73 -17.18 -0.13 4.41 16 18 O -0.48 -5.54 13.56 -18.75 -0.25 -5.79 16 19 N -0.52 -7.41 10.38 -13.45 -0.14 -7.55 16 20 C 0.33 4.22 7.73 -17.19 -0.13 4.09 16 21 O -0.48 -4.95 13.56 -18.75 -0.25 -5.21 16 22 C -0.20 -2.63 7.50 -38.84 -0.29 -2.92 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.66 7.06 -51.93 -0.37 0.30 16 25 H 0.07 0.99 7.99 -51.93 -0.42 0.57 16 26 H 0.08 1.36 8.13 -51.93 -0.42 0.93 16 27 H 0.09 1.26 4.06 -51.94 -0.21 1.05 16 28 H 0.04 0.94 7.92 -51.93 -0.41 0.53 16 29 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.16 2.31 7.97 -52.49 -0.42 1.89 16 32 H 0.40 2.58 9.06 45.56 0.41 2.99 16 33 H 0.40 2.09 9.06 45.56 0.41 2.50 16 34 H 0.18 2.16 2.58 -52.48 -0.14 2.02 16 LS Contribution 296.33 15.07 4.47 4.47 Total: -1.00 -34.92 296.33 -4.46 -39.38 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -1.90 Total: 3.60 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.74 Total: 4.98 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.16 Total: -44.92 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.42 Total: -23.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.92 -4.46 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701165022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.174 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds