Wall clock time and date at job start Mon Mar 30 2020 04:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.46887 * 2 1 4 4 C 1.46498 * 120.00156 * 277.65101 * 3 2 1 5 5 C 1.50700 * 109.47433 * 270.00047 * 4 3 2 6 6 H 1.08003 * 119.99844 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99908 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99967 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46740 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47429 * 119.99442 * 9 7 5 12 12 H 1.48497 * 109.47232 * 239.99819 * 9 7 5 13 13 C 1.34774 * 119.99473 * 97.65647 * 3 2 1 14 14 O 1.21512 * 119.99685 * 185.82594 * 13 3 2 15 15 C 1.48178 * 120.00511 * 5.82495 * 13 3 2 16 16 C 1.39724 * 120.86291 * 151.55026 * 15 13 3 17 17 C 1.38739 * 119.07531 * 180.02562 * 16 15 13 18 18 O 1.35682 * 119.58162 * 179.97438 * 17 16 15 19 19 N 1.32258 * 120.83479 * 0.02562 * 17 16 15 20 20 C 1.32251 * 121.90047 * 0.02562 * 19 17 16 21 21 O 1.35684 * 119.58316 * 179.97438 * 20 19 17 22 22 C 1.38739 * 120.83639 * 0.02562 * 20 19 17 23 23 H 1.09001 * 109.47292 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46939 * 299.99246 * 1 2 3 25 25 H 1.08998 * 109.47609 * 59.99279 * 1 2 3 26 26 H 1.09000 * 109.46939 * 240.00754 * 2 1 3 27 27 H 1.08995 * 109.47852 * 120.00258 * 2 1 3 28 28 H 1.08999 * 109.47222 * 30.00863 * 4 3 2 29 29 H 1.09002 * 109.46589 * 150.00418 * 4 3 2 30 30 H 0.97004 * 119.99883 * 180.02562 * 8 7 5 31 31 H 1.07996 * 120.45901 * 0.02562 * 16 15 13 32 32 H 0.96700 * 113.99869 * 270.01758 * 18 17 16 33 33 H 0.96697 * 114.00500 * 90.00052 * 21 20 19 34 34 H 1.08003 * 120.46532 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1031 2.1282 -1.2574 5 6 3.4598 1.9151 -1.8778 6 1 4.1861 1.2857 -1.3849 7 6 3.7739 2.5234 -3.0745 8 7 2.8893 3.2894 -3.6749 9 14 5.4554 2.2586 -3.8439 10 1 6.2600 1.3600 -2.9777 11 1 5.2946 1.6398 -5.1842 12 1 6.1479 3.5650 -3.9817 13 6 2.3894 1.9647 1.1568 14 8 2.6934 3.1411 1.1738 15 6 2.4268 1.1717 2.4080 16 6 3.3092 1.5020 3.4398 17 6 3.3134 0.7339 4.5951 18 8 4.1664 1.0451 5.6033 19 7 2.4972 -0.2986 4.7257 20 6 1.6487 -0.6437 3.7718 21 8 0.8328 -1.7121 3.9554 22 6 1.5829 0.0723 2.5853 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.3312 1.7764 -1.9418 29 1 1.9568 3.1901 -1.0597 30 1 3.1101 3.7171 -4.5170 31 1 3.9785 2.3436 3.3394 32 1 5.0258 0.6061 5.5411 33 1 -0.0166 -1.4932 4.3625 34 1 0.8874 -0.2145 1.8104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701165022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:19 Heat of formation + Delta-G solvation = -77.714324 kcal Electronic energy + Delta-G solvation = -20219.468930 eV Core-core repulsion = 16925.447777 eV Total energy + Delta-G solvation = -3294.021153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.23204 -40.54829 -39.04825 -37.36787 -37.10908 -35.11792 -33.68780 -32.02876 -30.51284 -29.37584 -26.22684 -24.93355 -24.38689 -23.82693 -21.31507 -19.64449 -19.27886 -18.64245 -18.51424 -17.70531 -17.43131 -16.95960 -16.53642 -16.21102 -15.93708 -15.77622 -15.02204 -14.58461 -14.36665 -13.70229 -13.58064 -13.37524 -13.32758 -13.11503 -12.96354 -12.70479 -12.54939 -12.32126 -12.24448 -12.01845 -11.73280 -11.30924 -11.03197 -10.66640 -10.56550 -9.86614 -9.57975 -8.25509 -6.40240 -0.49540 -0.29334 1.36553 1.38526 1.49913 1.66781 1.94305 2.21205 2.37870 2.40810 3.03861 3.05409 3.27273 3.71740 3.76802 3.99595 4.20963 4.26753 4.32033 4.42155 4.54045 4.78071 4.90348 4.92594 5.01029 5.14292 5.18265 5.36954 5.49646 5.75443 6.00959 6.39219 6.53557 6.63431 6.68366 6.71138 7.11547 7.32250 8.82179 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023277 B = 0.005468 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.591014 B = 5119.318491 C = 5743.756311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.064 3.936 3 N -0.584 5.584 4 C 0.259 3.741 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.011 3.989 8 N -0.925 5.925 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.269 1.269 12 H -0.281 1.281 13 C 0.540 3.460 14 O -0.580 6.580 15 C -0.054 4.054 16 C -0.152 4.152 17 C 0.341 3.659 18 O -0.481 6.481 19 N -0.528 5.528 20 C 0.342 3.658 21 O -0.475 6.475 22 C -0.187 4.187 23 H 0.108 0.892 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.033 0.967 29 H 0.004 0.996 30 H 0.268 0.732 31 H 0.148 0.852 32 H 0.425 0.575 33 H 0.427 0.573 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 -11.564 13.578 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.057 4.057 3 N -0.313 5.313 4 C 0.138 3.862 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.207 1.207 13 C 0.328 3.672 14 O -0.461 6.461 15 C -0.065 4.065 16 C -0.174 4.174 17 C 0.162 3.838 18 O -0.291 6.291 19 N -0.259 5.259 20 C 0.163 3.837 21 O -0.285 6.285 22 C -0.207 4.207 23 H 0.127 0.873 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.134 0.866 28 H 0.051 0.949 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.165 0.835 32 H 0.287 0.713 33 H 0.289 0.711 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.770 -11.314 14.092 18.461 hybrid contribution 0.876 0.877 -1.323 1.813 sum -2.894 -10.437 12.769 16.744 Atomic orbital electron populations 1.22262 0.93588 1.04642 1.02478 1.22670 0.96161 0.81653 1.05223 1.48167 1.61106 1.15074 1.06955 1.18866 0.96437 0.91100 0.79779 1.21711 1.00258 1.30221 1.06377 0.92787 1.25820 1.01333 0.94325 0.97354 1.70048 1.36485 1.31904 1.18045 0.85371 0.78974 0.78040 0.78452 1.19179 1.19398 1.20695 1.18586 0.77966 0.86616 0.84062 1.90732 1.51016 1.17823 1.86559 1.20090 0.96974 0.95529 0.93888 1.22202 1.00997 1.02574 0.91639 1.18414 0.91212 0.88487 0.85678 1.84748 1.29082 1.69755 1.45540 1.66471 1.08334 1.16953 1.34121 1.18571 0.90806 0.86743 0.87589 1.84759 1.31922 1.28269 1.83597 1.23478 1.02645 0.93761 1.00825 0.87327 0.91500 0.92949 0.90307 0.86650 0.94925 0.97785 0.92287 0.83455 0.71273 0.71100 0.78484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 9.11 71.98 0.66 -3.24 16 2 C 0.06 1.90 5.58 86.38 0.48 2.39 16 3 N -0.58 -24.39 2.46 -829.21 -2.04 -26.43 16 4 C 0.26 13.64 5.22 85.63 0.45 14.08 16 5 C -0.55 -30.94 9.39 25.60 0.24 -30.70 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.63 5.46 84.65 0.46 1.09 16 8 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 9 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 13 C 0.54 22.95 7.51 86.89 0.65 23.60 16 14 O -0.58 -30.20 16.31 -3.75 -0.06 -30.26 16 15 C -0.05 -1.73 5.62 -19.92 -0.11 -1.84 16 16 C -0.15 -4.51 9.62 22.75 0.22 -4.29 16 17 C 0.34 8.80 7.73 84.75 0.66 9.46 16 18 O -0.48 -10.15 13.56 -90.00 -1.22 -11.37 16 19 N -0.53 -13.60 10.38 -422.19 -4.38 -17.99 16 20 C 0.34 7.72 7.73 84.75 0.66 8.38 16 21 O -0.47 -7.76 13.56 -90.02 -1.22 -8.98 16 22 C -0.19 -4.54 7.50 22.75 0.17 -4.37 16 23 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.07 1.40 7.06 -2.39 -0.02 1.38 16 25 H 0.05 1.41 7.99 -2.39 -0.02 1.39 16 26 H 0.08 2.44 8.13 -2.39 -0.02 2.42 16 27 H 0.12 2.90 4.06 -2.40 -0.01 2.89 16 28 H 0.03 1.72 7.92 -2.39 -0.02 1.70 16 29 H 0.00 0.25 7.35 -2.39 -0.02 0.23 16 30 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.15 4.52 7.97 -2.91 -0.02 4.50 16 32 H 0.43 4.44 9.06 -74.06 -0.67 3.77 16 33 H 0.43 2.44 9.06 -74.06 -0.67 1.77 16 34 H 0.20 4.07 2.58 -2.91 -0.01 4.06 16 Total: -1.00 -77.92 296.33 -2.25 -80.18 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -0.17 Total: 8.77 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 4.53 Total: 14.55 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -6.14 Total: -99.00 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -2.50 Total: -50.61 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -77.92 -2.25 -80.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701165022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.462 kcal (2) G-P(sol) polarization free energy of solvation -77.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds